BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3961.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777945.1| ornithine cyclodeaminase [Herbaspirillum ser... 474 e-132 ref|YP_004751205.1| ornithine cyclodeaminase [Collimonas fungivo... 375 e-102 ref|YP_004682025.1| coenzyme PQQ synthesis protein C [Cupriavidu... 231 1e-58 ref|YP_297963.1| ornithine cyclodeaminase [Ralstonia eutropha JM... 229 5e-58 ref|YP_002008229.1| ornithine cyclodeaminase/mu-crystallin [Cupr... 228 7e-58 >ref|YP_003777945.1| ornithine cyclodeaminase [Herbaspirillum seropedicae SmR1] gb|ADJ66037.1| ornithine cyclodeaminase protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 283/306 (92%), Positives = 297/306 (97%) Query: 1 MKFLTNQQVSELLTTEDAIASMREAFAHAAEGAHQGRVRTSAANGVMLSMMGAVIPSAGI 60 MKFL+NQQ+SELLTTEDAIA+MREAFA AAEGAHQGRVRTSA+NGVMLSMMGAVIP+AGI Sbjct: 1 MKFLSNQQISELLTTEDAIAAMREAFAGAAEGAHQGRVRTSASNGVMLSMMGAVIPAAGI 60 Query: 61 AGAKVYTTIKGQFKFVIQLFSSETGAPLCTLEGDAMTGLRTAAATAVACDALARKDAATL 120 AGAKVYTTIKGQF+FVIQLFS+ETGAPLCT+EGDAMTGLRTAAATAVACDALAR DA L Sbjct: 61 AGAKVYTTIKGQFRFVIQLFSTETGAPLCTMEGDAMTGLRTAAATAVACDALARPDAGVL 120 Query: 121 AVIGTGVQARSHIPALLQVRPFKEVLIAGLSGREALAEEVTRTLGVPARVVSIDEAAAAA 180 AVIGTGVQARSHIPALLQVRPFKEVLIAG SG++ALAEEVTRTLGVPAR+VSIDEAAA A Sbjct: 121 AVIGTGVQARSHIPALLQVRPFKEVLIAGRSGQQALAEEVTRTLGVPARMVSIDEAAAQA 180 Query: 181 DVLVTVTRSATPLFDGKLLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE 240 DVLVTVTRSATPLFDG+LLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE Sbjct: 181 DVLVTVTRSATPLFDGELLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE 240 Query: 241 AGDLVQCAPGVFDWDKVMELAQAVDGSMPYQRRDEDIVIYKAIGIGLEDVALAGLAYRKA 300 AGDLVQCAPGVFDW +VMELAQAVDGSMPYQRR +DIVIYK IGIGLEDVALAGLAYRKA Sbjct: 241 AGDLVQCAPGVFDWAQVMELAQAVDGSMPYQRRPDDIVIYKGIGIGLEDVALAGLAYRKA 300 Query: 301 CARYGW 306 CARYGW Sbjct: 301 CARYGW 306 >ref|YP_004751205.1| ornithine cyclodeaminase [Collimonas fungivorans Ter331] gb|AEK60382.1| Ornithine cyclodeaminase [Collimonas fungivorans Ter331] Length = 305 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 211/306 (68%), Positives = 248/306 (81%), Gaps = 1/306 (0%) Query: 1 MKFLTNQQVSELLTTEDAIASMREAFAHAAEGAHQGRVRTSAANGVMLSMMGAVIPSAGI 60 MK +TNQQV+EL+ T DAI +MR+AFA +GA Q R+RTSA VM+S MGA++P+AGI Sbjct: 1 MKLITNQQVAELINTSDAIGAMRDAFAGIGQGAQQARMRTSAGP-VMMSSMGALLPAAGI 59 Query: 61 AGAKVYTTIKGQFKFVIQLFSSETGAPLCTLEGDAMTGLRTAAATAVACDALARKDAATL 120 AG KVYTTI G+F FV LFS+E G PL +E D MTGLRTAAATAVA D LAR+D ATL Sbjct: 60 AGYKVYTTINGKFHFVTVLFSTEDGRPLAAIESDTMTGLRTAAATAVAADHLARQDVATL 119 Query: 121 AVIGTGVQARSHIPALLQVRPFKEVLIAGLSGREALAEEVTRTLGVPARVVSIDEAAAAA 180 AVIGTGVQA SH+PALL VR FKE+LIAG SG++ AE+VT+ G+PAR VS+DEAA Sbjct: 120 AVIGTGVQAHSHVPALLAVRKFKEILIAGRSGQQQFAEKVTQQTGIPARAVSLDEAAQGG 179 Query: 181 DVLVTVTRSATPLFDGKLLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQE 240 DV+VTVTRSATPLF G+LL+ GAFVAAVGASK N+RELDD AI RA AL VEWKPQAQQE Sbjct: 180 DVVVTVTRSATPLFSGELLQTGAFVAAVGASKGNLRELDDRAIARANALVVEWKPQAQQE 239 Query: 241 AGDLVQCAPGVFDWDKVMELAQAVDGSMPYQRRDEDIVIYKAIGIGLEDVALAGLAYRKA 300 AGDL+ C PG F WD+V EL Q VDGS YQR+ +D+VIYKAIG+GLED+AL+GL YR+A Sbjct: 240 AGDLLLCQPGTFAWDQVWELGQIVDGSSTYQRQPDDLVIYKAIGVGLEDIALSGLVYRRA 299 Query: 301 CARYGW 306 C R+GW Sbjct: 300 CERFGW 305 >ref|YP_004682025.1| coenzyme PQQ synthesis protein C [Cupriavidus necator N-1] gb|AEI80793.1| ornithine cyclodeaminase [Cupriavidus necator N-1] Length = 310 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 140/301 (46%), Positives = 193/301 (64%), Gaps = 3/301 (0%) Query: 1 MKFLTNQQVSELLTTEDAIASMREAFAHAAEG--AHQGRVRTSAANGVMLSMMGAVIPSA 58 M+ +T++ V ++ EDA M AF+ G A Q R+RT A GV LS +GAVIP Sbjct: 1 MQHITDEMVDAHVSPEDARQVMEAAFSSFGRGDAAMQERIRTEAG-GVKLSTLGAVIPQQ 59 Query: 59 GIAGAKVYTTIKGQFKFVIQLFSSETGAPLCTLEGDAMTGLRTAAATAVACDALARKDAA 118 G+AGAKVYTTI GQF FVI +FS++ G PL + A+T LRTAA T +A LAR A Sbjct: 60 GVAGAKVYTTINGQFSFVILIFSTDDGRPLALFDAGAITRLRTAACTTLAAQRLARPGAR 119 Query: 119 TLAVIGTGVQARSHIPALLQVRPFKEVLIAGLSGREALAEEVTRTLGVPARVVSIDEAAA 178 TLA+ G G+Q H L + +L++ E + ++ G+P + D A A Sbjct: 120 TLALFGAGMQGVQHARQLSETLGLARILVSDPHADEGMPARLSALCGIPVTLAEPDAAVA 179 Query: 179 AADVLVTVTRSATPLFDGKLLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQ 238 AD++VT +R+ TPLF G LRPGAFVAA+G+S + RELDD+A+ RAAA+ VEW+PQ+ Sbjct: 180 EADIVVTASRATTPLFAGASLRPGAFVAAIGSSLPHTRELDDSALRRAAAIVVEWRPQSV 239 Query: 239 QEAGDLVQCAPGVFDWDKVMELAQAVDGSMPYQRRDEDIVIYKAIGIGLEDVALAGLAYR 298 +EAGD+V P +K++EL V G + ++RD+DIVIYK++G+GLEDVALAG A+ Sbjct: 240 REAGDIVLADPQALPREKIVELGDVVLGKVSPRQRDDDIVIYKSVGVGLEDVALAGFAWS 299 Query: 299 K 299 + Sbjct: 300 R 300 >ref|YP_297963.1| ornithine cyclodeaminase [Ralstonia eutropha JMP134] gb|AAZ63119.1| ornithine cyclodeaminase [Ralstonia eutropha JMP134] Length = 310 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 141/301 (46%), Positives = 189/301 (62%), Gaps = 3/301 (0%) Query: 1 MKFLTNQQVSELLTTEDAIASMREAFAHAAEG--AHQGRVRTSAANGVMLSMMGAVIPSA 58 M+ +T+ + ++ EDA M AFA G A Q R+RT A GV LS +GAVIP Sbjct: 1 MQHITDAMIDAHVSPEDARQVMEAAFASFGRGDAAMQERIRTEAG-GVKLSTLGAVIPQQ 59 Query: 59 GIAGAKVYTTIKGQFKFVIQLFSSETGAPLCTLEGDAMTGLRTAAATAVACDALARKDAA 118 G AGAKVYTTI GQF FVI +FS+E G PL + + A+T LRTAA T +A L R A Sbjct: 60 GFAGAKVYTTINGQFSFVILIFSTEDGRPLASFDAGAITRLRTAACTTLAAQRLVRPGAR 119 Query: 119 TLAVIGTGVQARSHIPALLQVRPFKEVLIAGLSGREALAEEVTRTLGVPARVVSIDEAAA 178 TLA+ G G Q H L + +L++ + ++ G+P V D A A Sbjct: 120 TLALFGAGTQGVQHARQLSATLGLQRILVSDPHADAGMPARLSAQCGIPVVVSEPDAAVA 179 Query: 179 AADVLVTVTRSATPLFDGKLLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQ 238 AD++VT +R+ TPLF G LRPGAFVAA+G+S + RELDDTA+ RAAA+ VEW+PQ+ Sbjct: 180 EADIVVTASRATTPLFAGASLRPGAFVAAIGSSLPHTRELDDTALRRAAAVVVEWRPQST 239 Query: 239 QEAGDLVQCAPGVFDWDKVMELAQAVDGSMPYQRRDEDIVIYKAIGIGLEDVALAGLAYR 298 +EAGD+V P +K++EL V G + ++RD+DIVIYK++G+GLEDVALAG A+ Sbjct: 240 REAGDIVLADPQALPTEKIVELGDVVLGKVSPRQRDDDIVIYKSVGVGLEDVALAGFAWS 299 Query: 299 K 299 + Sbjct: 300 R 300 >ref|YP_002008229.1| ornithine cyclodeaminase/mu-crystallin [Cupriavidus taiwanensis LMG 19424] emb|CAQ72175.1| Ornithine cyclodeaminase/mu-crystallin, similar to arcB [Cupriavidus taiwanensis LMG 19424] Length = 303 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 140/289 (48%), Positives = 190/289 (65%), Gaps = 3/289 (1%) Query: 13 LTTEDAIASMREAFAHAAEG--AHQGRVRTSAANGVMLSMMGAVIPSAGIAGAKVYTTIK 70 +T E A+ M AF+ G A Q R+RT A GV LS +GAVIP+ G+AGAKVYTTI Sbjct: 6 VTPEAALEVMASAFSSFGRGDAAMQARIRTEAG-GVKLSTLGAVIPTQGVAGAKVYTTIN 64 Query: 71 GQFKFVIQLFSSETGAPLCTLEGDAMTGLRTAAATAVACDALARKDAATLAVIGTGVQAR 130 GQF FVI +FS++ G PL + + A+T LRTAA T +A LAR A TLA+ G G Q Sbjct: 65 GQFSFVILIFSTDDGRPLASFDAGAITRLRTAACTTLAAQRLARAGARTLALFGAGTQGA 124 Query: 131 SHIPALLQVRPFKEVLIAGLSGREALAEEVTRTLGVPARVVSIDEAAAAADVLVTVTRSA 190 H L + +L++ A+ E ++ G+P + D A A AD++VT +R+ Sbjct: 125 QHARQLSAALGLERILVSDPHADAAMPERLSAQCGIPVALAEPDAAVAEADIIVTASRAT 184 Query: 191 TPLFDGKLLRPGAFVAAVGASKANVRELDDTAIGRAAALFVEWKPQAQQEAGDLVQCAPG 250 TPLF G +RPGAFVAA+G+S + RELDDTA+ RAAA+ VEW+PQ+ +EAGD+V PG Sbjct: 185 TPLFSGAAIRPGAFVAAIGSSLPHTRELDDTALRRAAAVVVEWRPQSTREAGDIVLAGPG 244 Query: 251 VFDWDKVMELAQAVDGSMPYQRRDEDIVIYKAIGIGLEDVALAGLAYRK 299 +K++ELA V G + ++RD+DIVIYK++G+GLEDVALAG A+ + Sbjct: 245 ALPPEKIVELADVVIGKVSPRQRDDDIVIYKSVGVGLEDVALAGYAWSR 293