BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3958.p (589 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777944.1| drug/metabolite transporter (DMT) superfamil... 419 e-115 ref|ZP_00946078.1| Transporter, drug/metabolite exporter family ... 199 9e-49 gb|AEG68247.1| conserved hypothetical protein [Ralstonia solanac... 199 9e-49 ref|YP_001900331.1| hypothetical protein Rpic_2775 [Ralstonia pi... 194 4e-47 ref|YP_003744831.1| hypothetical protein RCFBP_10891 [Ralstonia ... 193 8e-47 >ref|YP_003777944.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ66036.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 278/298 (93%), Positives = 291/298 (97%) Query: 292 MSSSNIAKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLSLLAFARMRGVPLQW 351 MSSSN+ KLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATL+LLAFAR+RGVP+QW Sbjct: 1 MSSSNLCKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLALLAFARVRGVPMQW 60 Query: 352 RRNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPIFTAMFGFLLLGERLSLV 411 R NWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAP+FTAMFGFLL+GERLSLV Sbjct: 61 RSNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPVFTAMFGFLLMGERLSLV 120 Query: 412 RTGAFVLGLVGVAVLVGIGPAPVDALVIAGVLAAMGAAVSYGFAATFTRMRAGGIPPIAM 471 R AFVLGLVGVAVLVGIGPAP DA+VIAGVLAAMGAAVSYGFAATFTR+RAGGI PIA+ Sbjct: 121 RCAAFVLGLVGVAVLVGIGPAPADAMVIAGVLAAMGAAVSYGFAATFTRLRAGGISPIAL 180 Query: 472 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALLSVLVLGVVCTGIAYALFFQLIAAEGAT 531 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALL+VLVLGVVCTGIAYALFFQLIAAEGAT Sbjct: 181 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALLAVLVLGVVCTGIAYALFFQLIAAEGAT 240 Query: 532 KAITVTFLVPMTASLWGWLLLDEPVTVGTVTGIAVVLIATATALRAKPAVAARTKATA 589 KAITVTFLVPMTASLW WLLLDEPVT+GTVTGIA+VL+ATATALRAKPAVAARTKATA Sbjct: 241 KAITVTFLVPMTASLWAWLLLDEPVTLGTVTGIAIVLVATATALRAKPAVAARTKATA 298 >ref|ZP_00946078.1| Transporter, drug/metabolite exporter family [Ralstonia solanacearum UW551] ref|YP_002258924.1| hypothetical protein RSIPO_00720 [Ralstonia solanacearum IPO1609] gb|EAP71434.1| Transporter, drug/metabolite exporter family [Ralstonia solanacearum UW551] emb|CAQ60851.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 310 Score = 199 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 125/281 (44%), Positives = 177/281 (62%), Gaps = 2/281 (0%) Query: 292 MSSSNIAKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLSLLAFARMRGVPLQW 351 M S++ +LL LAA+WG SF+ MR+AAP+FGP+ R ++A+ LL MRG Sbjct: 1 MRRSDVIELLTLAALWGGSFLFMRVAAPLFGPVALIALRVAIASAFLLPVLAMRGGLGAL 60 Query: 352 RRNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPIFTAMFGFLLLGERLSLV 411 R W L +GI N+A+PF LFA++ L + + + + +N+ AP+F A+ F+ LGER+S Sbjct: 61 RAQWPHLLAVGILNSAIPFCLFAYAELTLTAGFTSVLNAAAPLFAAIVAFVWLGERMSSW 120 Query: 412 RTGAFVLGLVGVAVLVGIGPAPVDALVIAGVLAAMGAAVSYGFAATFTRMRAGGIPPIAM 471 R +G VGV VLVG A V AA+GA V YG A+++T+ G+PP+A+ Sbjct: 121 RVLGLAIGFVGVIVLVGGSSALDAGQGGLAVAAALGATVLYGLASSYTKRHLTGVPPLAV 180 Query: 472 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALLSVLVLGVVCTGIAYALFFQLIAAEGAT 531 ATGSQ AAA+ L PLA P G++ V+ LG+ CTGIAY LFF+L+A G T Sbjct: 181 ATGSQVAAAIVLAPLAVWLWPAHTPTGSV--WFHVIGLGIACTGIAYILFFRLVAHVGPT 238 Query: 532 KAITVTFLVPMTASLWGWLLLDEPVTVGTVTGIAVVLIATA 572 +A++VTFL+P+ LWG L LDEP+T+ V G AV+L+ T+ Sbjct: 239 RAVSVTFLIPVFGVLWGILFLDEPLTLNMVAGCAVILLGTS 279 >gb|AEG68247.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 310 Score = 199 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 125/281 (44%), Positives = 177/281 (62%), Gaps = 2/281 (0%) Query: 292 MSSSNIAKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLSLLAFARMRGVPLQW 351 M S++ +LL LAA+WG SF+ MR+AAP+FGP+ R ++A+ LL MRG Sbjct: 1 MRRSDVIELLTLAALWGGSFLFMRVAAPLFGPVALIALRVAIASAFLLPVLAMRGGLGVL 60 Query: 352 RRNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPIFTAMFGFLLLGERLSLV 411 R W L +GI N+A+PF LFA++ L + + + + +N+ AP+F A+ F+ LGER+S Sbjct: 61 RAQWPHLLAVGILNSAIPFCLFAYAELTLTAGFTSVLNAAAPLFAAIVAFVWLGERMSSW 120 Query: 412 RTGAFVLGLVGVAVLVGIGPAPVDALVIAGVLAAMGAAVSYGFAATFTRMRAGGIPPIAM 471 R +G VGV VLVG A V AA+GA V YG A+++T+ G+PP+A+ Sbjct: 121 RVLGLAIGFVGVIVLVGGSSALDAGQGGLAVAAALGATVLYGLASSYTKRHLTGVPPLAV 180 Query: 472 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALLSVLVLGVVCTGIAYALFFQLIAAEGAT 531 ATGSQ AAA+ L PLA P G++ V+ LG+ CTGIAY LFF+L+A G T Sbjct: 181 ATGSQVAAAIVLAPLAVWLWPAHTPTGSV--WFHVIGLGIACTGIAYILFFRLVAHVGPT 238 Query: 532 KAITVTFLVPMTASLWGWLLLDEPVTVGTVTGIAVVLIATA 572 +A++VTFL+P+ LWG L LDEP+T+ V G AV+L+ T+ Sbjct: 239 RAVSVTFLIPVFGVLWGILFLDEPLTLNMVAGCAVILLGTS 279 >ref|YP_001900331.1| hypothetical protein Rpic_2775 [Ralstonia pickettii 12J] gb|ACD27899.1| protein of unknown function DUF6 transmembrane [Ralstonia pickettii 12J] Length = 310 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 118/282 (41%), Positives = 177/282 (62%), Gaps = 4/282 (1%) Query: 292 MSSSNIAKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLSLLAFARMRGVPLQW 351 M S++ +LL LAA+WG SF+ MR+AAP FGP+ R ++A+ L+ +RG Sbjct: 1 MRRSDVLELLTLAALWGGSFLFMRVAAPPFGPVALIALRVAIASCFLVPMLTLRGGMGAL 60 Query: 352 RRNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPIFTAMFGFLLLGERLSLV 411 R +W L +G+ N+A+PF LFA++ L + + + + +N+ AP+F A+ F LGER+S + Sbjct: 61 RTHWPHLLAVGVLNSAIPFCLFAYAELTLTAGFTSVLNAAAPLFAAIVAFTWLGERMSSL 120 Query: 412 RTGAFVLGLVGVAVLVGIGPAPVDALVIA-GVLAAMGAAVSYGFAATFTRMRAGGIPPIA 470 R +G +GV VLVG G + +DA V AA+ A V YG A+++T+ G+PP+A Sbjct: 121 RVLGLAIGFIGVIVLVG-GSSVIDAKQGGVAVAAALSATVLYGVASSYTKRFLTGVPPLA 179 Query: 471 MATGSQFAAALCLLPLAAPSMPHALQAGTLPALLSVLVLGVVCTGIAYALFFQLIAAEGA 530 +ATGSQ AA+ L PLA P G++ L V+ LG+ CTG+AY LFF+L+A G Sbjct: 180 VATGSQLGAAIVLAPLAYWLWPAQTPTGSV--WLHVIALGIACTGVAYILFFRLVAHVGP 237 Query: 531 TKAITVTFLVPMTASLWGWLLLDEPVTVGTVTGIAVVLIATA 572 T+A++VTFL+P+ LWG L L E +T+ V G AV+L+ + Sbjct: 238 TRAVSVTFLIPVFGVLWGILFLGEQLTLNMVIGCAVILLGAS 279 >ref|YP_003744831.1| hypothetical protein RCFBP_10891 [Ralstonia solanacearum CFBP2957] emb|CBJ42194.1| conserved membrane protein of unknown function, DUF6, putative transporter [Ralstonia solanacearum CFBP2957] Length = 310 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 124/281 (44%), Positives = 173/281 (61%), Gaps = 2/281 (0%) Query: 292 MSSSNIAKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLSLLAFARMRGVPLQW 351 M S++ +LL LAA+WG SF+ MR+AAP FGP+ R ++A+ LL MRG Sbjct: 1 MRRSDVLELLTLAALWGGSFLFMRVAAPPFGPVALIALRVAIASAFLLPVLAMRGGLGIL 60 Query: 352 RRNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPIFTAMFGFLLLGERLSLV 411 R W L +GI N+A+PF LFA++ L + + + + +N+ AP+F A+ F LGER+S Sbjct: 61 RAQWPHLLAVGILNSAIPFCLFAYAELTLTAGFTSVLNAAAPLFAAIVAFAWLGERMSSW 120 Query: 412 RTGAFVLGLVGVAVLVGIGPAPVDALVIAGVLAAMGAAVSYGFAATFTRMRAGGIPPIAM 471 R +G VGV VLVG A V AA+GA V YG A+++T+ G+PP+A+ Sbjct: 121 RVLGLAIGFVGVIVLVGGSSALDAGQGGLAVAAALGATVLYGLASSYTKRHLTGVPPLAV 180 Query: 472 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALLSVLVLGVVCTGIAYALFFQLIAAEGAT 531 ATGSQ AAA+ L PLA P G + V+ LG+ CTGIAY LFF+L+A G T Sbjct: 181 ATGSQVAAAIVLAPLAVWLWPAHTPTGGV--WFHVIGLGIACTGIAYILFFRLVAHVGPT 238 Query: 532 KAITVTFLVPMTASLWGWLLLDEPVTVGTVTGIAVVLIATA 572 +A++VTFL+P+ LWG L L EP+T+ V G AV+L+ T+ Sbjct: 239 RAVSVTFLIPVFGVLWGILFLHEPLTLNMVAGCAVILLGTS 279