BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3955.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777941.1| ArsR family transcription regulator protein ...   202   1e-50
ref|YP_001353338.1| ArsR family transcriptional regulator [Janth...   160   6e-38
ref|ZP_08276239.1| Transcriptional regulator, ArsR family [Oxalo...   151   4e-35
ref|YP_004700209.1| ArsR family transcriptional regulator [Pseud...   140   5e-32
ref|YP_001670364.1| ArsR family transcriptional regulator [Pseud...   135   2e-30

>ref|YP_003777941.1| ArsR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ66033.1| ArsR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 142

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/110 (94%), Positives = 105/110 (95%)

Query: 1   MRPYKHPEIAEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 60
           MRPYKHP   EFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL
Sbjct: 33  MRPYKHPATDEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 92

Query: 61  REAGLVRTESNGTTHINTLRSADIEQRFPGLLSAILAQHDKLPARRKKAA 110
           REAGLVRTESNGT HINTLRSADIEQRFPGLLSAILAQ DKLP+RRKKAA
Sbjct: 93  REAGLVRTESNGTAHINTLRSADIEQRFPGLLSAILAQQDKLPSRRKKAA 142


>ref|YP_001353338.1| ArsR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89424.1| transcriptional regulator, ArsR family [Janthinobacterium sp.
           Marseille]
          Length = 104

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 81/99 (81%), Positives = 90/99 (90%)

Query: 1   MRPYKHPEIAEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 60
           MRP+KHP  +EF LERVLYALSDSIRL+IVRHLARV+ A+CGELDGGRPKSTVSHHFKVL
Sbjct: 4   MRPFKHPAASEFSLERVLYALSDSIRLDIVRHLARVDAASCGELDGGRPKSTVSHHFKVL 63

Query: 61  REAGLVRTESNGTTHINTLRSADIEQRFPGLLSAILAQH 99
           RE+GLV TE+ GT H+NTLR ADIE RFPGLL+AILAQH
Sbjct: 64  RESGLVHTENTGTMHMNTLRRADIESRFPGLLNAILAQH 102


>ref|ZP_08276239.1| Transcriptional regulator, ArsR family [Oxalobacteraceae
          bacterium IMCC9480]
 gb|EGF30288.1| Transcriptional regulator, ArsR family [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 100

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/98 (80%), Positives = 84/98 (85%)

Query: 1  MRPYKHPEIAEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 60
          MRP KHP   +  LERVLYALSDSIRL+IVRHLARVE ATCGELDGGRPKSTVSHHFKVL
Sbjct: 1  MRPLKHPPATDLALERVLYALSDSIRLDIVRHLARVEVATCGELDGGRPKSTVSHHFKVL 60

Query: 61 REAGLVRTESNGTTHINTLRSADIEQRFPGLLSAILAQ 98
          REAGLV TE+NGT H+N LR ADIE RFP LL+AIL Q
Sbjct: 61 REAGLVATENNGTNHMNRLRRADIESRFPDLLAAILKQ 98


>ref|YP_004700209.1| ArsR family transcriptional regulator [Pseudomonas putida S16]
 gb|AEJ11329.1| ArsR family transcriptional regulator [Pseudomonas putida S16]
          Length = 105

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/98 (69%), Positives = 83/98 (84%)

Query: 1   MRPYKHPEIAEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 60
           MRPYKHP + EFVLER+LYALSD +RLEIVR LA +  A+CGELDGGRPKST+SHHF+VL
Sbjct: 6   MRPYKHPPVTEFVLERLLYALSDPVRLEIVRRLAELGEASCGELDGGRPKSTMSHHFRVL 65

Query: 61  REAGLVRTESNGTTHINTLRSADIEQRFPGLLSAILAQ 98
           R+AGLV+T++ GTTH+N+LR  D+  RFP LL  IL+Q
Sbjct: 66  RDAGLVQTQTIGTTHMNSLRRDDLNNRFPSLLETILSQ 103


>ref|YP_001670364.1| ArsR family transcriptional regulator [Pseudomonas putida GB-1]
 gb|ABZ00029.1| transcriptional regulator, ArsR family [Pseudomonas putida GB-1]
          Length = 111

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/98 (67%), Positives = 83/98 (84%)

Query: 1   MRPYKHPEIAEFVLERVLYALSDSIRLEIVRHLARVECATCGELDGGRPKSTVSHHFKVL 60
           MR YKHP   + +LER+LYALSD +RLEIVRHLA V  A+CGELDGGRPKS++SHHF+VL
Sbjct: 13  MRAYKHPNPEDLILERLLYALSDPVRLEIVRHLAGVAEASCGELDGGRPKSSMSHHFRVL 72

Query: 61  REAGLVRTESNGTTHINTLRSADIEQRFPGLLSAILAQ 98
           R+AGLV+T + GTTH+N+LRS  +++RFPGLL+ IL Q
Sbjct: 73  RDAGLVQTRNVGTTHMNSLRSEMLDERFPGLLACILRQ 110