BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3954.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777940.1| hypothetical protein Hsero_4566 [Herbaspiril...   239   1e-61

>ref|YP_003777940.1| hypothetical protein Hsero_4566 [Herbaspirillum seropedicae SmR1]
 gb|ADJ66032.1| hypothetical protein Hsero_4566 [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  239 bits (609), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 119/143 (83%), Positives = 126/143 (88%)

Query: 18  MLPTYGATYRGKHISVSCTQQRDGDVLCTVQIDGEPAPGLHGNPFASVASAQVAGVGYAR 77
           M   YGATYRGK ISV   +QR+GDVLC V ID EPAP L GNPF+S+A+AQV  VGYAR
Sbjct: 1   MTHHYGATYRGKQISVESIEQRNGDVLCKVSIDDEPAPHLRGNPFSSLAAAQVTAVGYAR 60

Query: 78  AVIDTQLDNDVAEHHGYFIRVSSREQIDGTWVGSYQLHRNDNPVAFRRVVCEDFRGNTSV 137
           AVIDT LDNDVAEHHGYFIRVSS EQIDGTWVG+YQLHRNDNPVAFRRVVCEDFRGNTSV
Sbjct: 61  AVIDTLLDNDVAEHHGYFIRVSSTEQIDGTWVGNYQLHRNDNPVAFRRVVCEDFRGNTSV 120

Query: 138 EAEQYAMATAFVAVDADVKAGKL 160
           EAEQYAMATAFVAVDAD+ AGKL
Sbjct: 121 EAEQYAMATAFVAVDADIAAGKL 143