BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3948.p (604 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777932.1| hypothetical protein Hsero_4558 [Herbaspiril... 469 e-130 ref|YP_001777279.1| hypothetical protein Bcenmc03_3637 [Burkhold... 330 4e-88 ref|ZP_04942088.1| conserved hypothetical protein [Burkholderia ... 330 6e-88 ref|YP_624331.1| hypothetical protein Bcen_4476 [Burkholderia ce... 327 3e-87 ref|YP_372955.1| hypothetical protein Bcep18194_B2200 [Burkholde... 321 2e-85 >ref|YP_003777932.1| hypothetical protein Hsero_4558 [Herbaspirillum seropedicae SmR1] gb|ADJ66024.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 555 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 355/572 (62%), Positives = 390/572 (68%), Gaps = 30/572 (5%) Query: 46 MTTRNRSSAIIVSASLLGAVLALSACQKQDAVPPTAAAAPAAPTTPPYTP---PTAEQLS 102 MTTRNRSSAIIVSASLLGAVLALSACQKQDA PPTAA AP APT P PTAEQLS Sbjct: 1 MTTRNRSSAIIVSASLLGAVLALSACQKQDAPPPTAAGAPTAPTAAATPPYTPPTAEQLS 60 Query: 103 QMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQAAEDKEPWDVSVKS 162 QMVAPIALFPDKLVAQVLAGATYPDQ+VAANQWLGQN ALKGDILQAAEDK+PWDVSVKS Sbjct: 61 QMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDVSVKS 120 Query: 163 LTMFPAVLSQMAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQAGNLKSSSQLKVVST 222 LTMFPAVLSQMAANPDWTR+LGDAFVNDPNDVMNAIQALRL+AQQAG+LKSS QL+V +T Sbjct: 121 LTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLRVSTT 180 Query: 223 VRSSDTVRVEDAPAPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPAYNPAVVYGPPVPVY 282 RS+ TVR E P+ VYAGAPVI PPPQTIVIESSQPDTVYVP Y+PAVVYG PVPVY Sbjct: 181 ERSTSTVRYE---TPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGAPVPVY 237 Query: 283 PGYAYRPPSPVANEVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGGGGGDRPSGDW 342 PGY YRPPS VA+EVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGG D Sbjct: 238 PGYVYRPPSHVADEVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGPVQQD------ 291 Query: 343 QRPAVVYKNTTYVSHSTTVI--------NRVTNNNVTVNNTRVVNNNVNNVSNVSNVNNV 394 +PAVVYKNT+YVSHSTTVI N V + +NVNNV+N NV N Sbjct: 292 -QPAVVYKNTSYVSHSTTVINRVTNNVIVNNNNRTVNNISNVNNVSNVNNVNNTRNVVNE 350 Query: 395 RNVDERNVNNQTRIDNRRE--QVAPAAMSMPHFTASDARPGAMPSLRTQETQQKMALANL 452 VD R N +D RRE Q APAAMSMPHFTASDAR GA P Q+MA + Sbjct: 351 NRVDRRVTVNN--VDQRREAVQAAPAAMSMPHFTASDARMGATPH---APAPQQMAALHE 405 Query: 453 HAQPQAQKEAVQATGARPHQEAPQQAQHEQQEQLQQQQQEQRAQKEQQAAHEREQAQQNA 512 H P A + A AR E + A+ + +QQ Q+E + ++ A Sbjct: 406 HVAPAAPEHASAQHDARVMAEEKKMAEERKMPPMQQMQKEAAKPAMTRMENKEAPAAHMT 465 Query: 513 AQQARQQAEERKAQAMKQENLHPQMQAHAAAAPREERPPQHEQKAAPERHEAAPHAQEAH 572 A Q ++ + M MQ H A A + A E HE H + H Sbjct: 466 PPVAHAQPAPQREEKMSMPTHAASMQQHEAQAHAPAP--HPPAQHAAEAHEVEKHEAQQH 523 Query: 573 AQAKHEPAKHEEDKRANDKHEGEKHEGEKHNG 604 KHE KH DK +KHEGEK E + HNG Sbjct: 524 QAEKHEEQKHAADKHEAEKHEGEKREAQHHNG 555 >ref|YP_001777279.1| hypothetical protein Bcenmc03_3637 [Burkholderia cenocepacia MC0-3] gb|ACA92789.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3] Length = 582 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 253/575 (44%), Positives = 327/575 (56%), Gaps = 40/575 (6%) Query: 37 APSRIEDFIMTTRNRSSAIIVSASLLGAVLALSACQKQD--------AVPPTAAAAPAAP 88 +P R + +R ++++S++ ++L LSAC K+D + A+AA A Sbjct: 16 SPHRTNNMNHARAHRPVRTLIASSVIVSLLGLSACNKRDESSAAAPASDASAASAAQPAS 75 Query: 89 TTPPYTPPTAEQLSQMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQ 148 T YTPP+A+QL QMVAPIALFPDKLVA VLAGATYPDQI AAN W+ QN +LKG L Sbjct: 76 TPVAYTPPSADQLYQMVAPIALFPDKLVALVLAGATYPDQIAAANTWVTQNPSLKGQALA 135 Query: 149 AAEDKEPWDVSVKSLTMFPAVLSQMAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQA 208 +A D +PWD SVK+LT FPAVLSQMA+NP WT SLG A+ NDP DVMNAIQ +R RAQ++ Sbjct: 136 SAADAQPWDPSVKALTAFPAVLSQMASNPAWTTSLGQAYYNDPTDVMNAIQVMRQRAQKS 195 Query: 209 GNLKSSSQLKVVSTVRSSDTVRVEDAPAPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPA 268 G+L+SS Q++V +++ AP VY+G ++PPP Q I IE +QPD VYVP+ Sbjct: 196 GHLRSSGQMRVTQVAQAAPAGYTPATDAP-VVYSGPAIVPPPEQAIEIEPAQPDVVYVPS 254 Query: 269 YNPAVVYGPPVPVYPGYAYRPPSPVANEVVV-GALSFGVGVFVGEAISHHSDWGWHDWGM 327 YNP VVYG PV YPGY YRPP EVV G ++FG+G+ VG AI H DWGWH WG+ Sbjct: 255 YNPTVVYGEPVSSYPGYVYRPPVYSTGEVVTAGVITFGIGIAVGAAIFGHHDWGWHAWGV 314 Query: 328 HWGGG-GGGDRPSGDWQRPAVVYKNTTYVSHSTTVINRVTNNNVTVNNTRVVNNNVNNVS 386 +WG G G WQRPAVVY +TTYV+ STTVIN +TN + NTR+ NN NV+ Sbjct: 315 NWGAPRPEGPAWHGGWQRPAVVYNHTTYVTKSTTVINNITN----IRNTRITNNYGGNVT 370 Query: 387 NVSNVNNVRNVDERNVNNQTRIDNRREQVAPAAMSMPHFTASDARPGAMP---SLRTQET 443 N N + R R ++ A M++PHF A+DARPGA P + Sbjct: 371 N--NNTTIERNTVRPGAEPMRGQALEQRPGAAPMTIPHFGANDARPGARPAPEAFAQHRA 428 Query: 444 QQKMALANLHAQPQAQKEAVQATGARPHQEAPQQAQH----------------EQQEQLQ 487 A + P A + Q R H +A +Q+E LQ Sbjct: 429 NAPHAEVPVPHPPGATHDTRQQAMQREHAAQETRAAAQQQQQQRAEMQRHDAAQQREALQ 488 Query: 488 QQQQEQRAQKEQQAAHEREQAQQNAAQQARQQAEERKAQAMKQENLHPQMQAHAAAAPRE 547 Q+ Q+ + Q + Q QQ Q R +A +++ Q+ +MQ H A PRE Sbjct: 489 QRNAAQQQEHAQAQQRDEAQQQQRVEAQQRDEARQQQRSEAAQQQQRKEMQPHPEAPPRE 548 Query: 548 ERPPQHEQKAAPERHEAAPHAQEAHAQAKHEPAKH 582 PQ Q AAPE H APH E+H HE +H Sbjct: 549 HAAPQPRQ-AAPE-HAHAPHPAESH--PPHESREH 579 >ref|ZP_04942088.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gb|EAY65259.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 606 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 254/576 (44%), Positives = 326/576 (56%), Gaps = 40/576 (6%) Query: 37 APSRIEDFIMTTRNRSSAIIVSASLLGAVLALSACQKQD-------AVPPTAAAAPAAPT 89 +P R + +R ++++S++ ++L LSAC+ D + A+AA A T Sbjct: 38 SPHRTNNMNHARAHRPVRTLIASSVIVSLLGLSACKHDDNSTAAPASDASAASAAQPAST 97 Query: 90 TPPYTPPTAEQLSQMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQA 149 YTPP+A+QL QMVAPIALFPDKLVA VLAGATYPDQI AAN W+ QN +LKG L + Sbjct: 98 PAAYTPPSADQLYQMVAPIALFPDKLVALVLAGATYPDQIAAANTWVTQNPSLKGQALAS 157 Query: 150 AEDKEPWDVSVKSLTMFPAVLSQMAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQAG 209 A D +PWD SVK+LT FPAVLSQMA+NP WT SLG A+ NDP DVMNAIQ +R RAQ++G Sbjct: 158 AADAQPWDPSVKALTAFPAVLSQMASNPAWTTSLGQAYYNDPTDVMNAIQVMRQRAQKSG 217 Query: 210 NLKSSSQLKVVSTVRSSDTVRVEDAPAPRT--VYAGAPVIPPPPQTIVIESSQPDTVYVP 267 +L+SS QL+V +++ PA VY+G ++PPP Q I IE +QPD VYVP Sbjct: 218 HLRSSGQLRVTQVAQAAQAAPAGYTPATDAPVVYSGPAIVPPPEQAIEIEPAQPDVVYVP 277 Query: 268 AYNPAVVYGPPVPVYPGYAYRPPSPVANEVVV-GALSFGVGVFVGEAISHHSDWGWHDWG 326 +YNP VVYG PV YPGY YRPP EVV G ++FG+G+ VG AI H DWGWH WG Sbjct: 278 SYNPTVVYGEPVSSYPGYVYRPPVYSTGEVVTAGVITFGIGIAVGAAIFGHHDWGWHAWG 337 Query: 327 MHWGG-GGGGDRPSGDWQRPAVVYKNTTYVSHSTTVINRVTNNNVTVNNTRVVNNNVNNV 385 ++WG G G WQRPAVVY +TTYV+ STTVIN VTN + NTR+ NN NV Sbjct: 338 VNWGAPHPEGPAWHGGWQRPAVVYNHTTYVTKSTTVINNVTN----IRNTRITNNYGGNV 393 Query: 386 SNVSNVNNVRNVDERNVNNQTRIDNRREQVAPAAMSMPHFTASDARPGAMP---SLRTQE 442 +N + V R R ++ A M++PHF A+DARPGA P + Sbjct: 394 TNNNTAIGRNTV--RPGAEPMRGQALEQRPGAAPMTIPHFGANDARPGARPAPEAFAQHR 451 Query: 443 TQQKMALANLHAQPQAQKEAVQATGARPHQEAPQQAQH----------------EQQEQL 486 A + P A + Q R H +A +Q+E L Sbjct: 452 ANAPHAEVPVPHPPGATHDTRQQAMQREHAAQETRAAAQQQQQQRAEMQRHDAAQQREAL 511 Query: 487 QQQQQEQRAQKEQQAAHEREQAQQNAAQQARQQAEERKAQAMKQENLHPQMQAHAAAAPR 546 QQ+ Q+ + Q + Q QQ Q R +A +++ Q+ +MQ H A PR Sbjct: 512 QQRNAAQQQEHAQAQQRDEAQQQQRVEAQQRDEARQQQRSEAAQQQQRKEMQPHPEAPPR 571 Query: 547 EERPPQHEQKAAPERHEAAPHAQEAHAQAKHEPAKH 582 E PQ Q AAPE H APH E+H HE +H Sbjct: 572 EHAAPQPRQ-AAPE-HAHAPHPAESH--PPHESREH 603 >ref|YP_624331.1| hypothetical protein Bcen_4476 [Burkholderia cenocepacia AU 1054] ref|YP_837520.1| hypothetical protein Bcen2424_3890 [Burkholderia cenocepacia HI2424] gb|ABF79358.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054] gb|ABK10627.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424] Length = 560 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 251/562 (44%), Positives = 323/562 (57%), Gaps = 40/562 (7%) Query: 50 NRSSAIIVSASLLGAVLALSACQKQD--------AVPPTAAAAPAAPTTPPYTPPTAEQL 101 +R ++++S++ ++L LSAC K+D + A+AA A T YTPP+A+QL Sbjct: 7 HRPVRTLIASSVIVSLLGLSACNKRDESSAAAPASDASAASAAQPASTPVAYTPPSADQL 66 Query: 102 SQMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQAAEDKEPWDVSVK 161 QMVAPIALFPDKLVA VLAGATYPDQI AAN W+ QN +LKG L +A D +PWD SVK Sbjct: 67 YQMVAPIALFPDKLVALVLAGATYPDQIAAANTWVTQNPSLKGQALASAADAQPWDPSVK 126 Query: 162 SLTMFPAVLSQMAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQAGNLKSSSQLKVVS 221 +LT FPAVLSQMA+NP WT SLG A+ NDP DVMNAIQ +R RAQ++G+L+SS Q++V Sbjct: 127 ALTAFPAVLSQMASNPAWTTSLGQAYYNDPTDVMNAIQVMRQRAQKSGHLRSSGQMRVTQ 186 Query: 222 TVRSSDTVRVEDAPAPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPAYNPAVVYGPPVPV 281 +++ AP VY+G ++PPP Q I IE +QPD VYVP+YNP VVYG PV Sbjct: 187 VAQAAPAGYTPATDAP-VVYSGPAIVPPPEQAIEIEPAQPDVVYVPSYNPTVVYGEPVSS 245 Query: 282 YPGYAYRPPSPVANEVVV-GALSFGVGVFVGEAISHHSDWGWHDWGMHWGGG-GGGDRPS 339 YPGY YRPP EVV G ++FG+G+ VG AI H DWGWH WG++WG G Sbjct: 246 YPGYVYRPPVYSTGEVVTAGVITFGIGIAVGAAIFGHHDWGWHAWGVNWGAPRPEGPAWH 305 Query: 340 GDWQRPAVVYKNTTYVSHSTTVINRVTNNNVTVNNTRVVNNNVNNVSNVSNVNNVRNVDE 399 G WQRPAVVY +TTYV+ STTVIN +TN + NTR+ NN NV+N N + Sbjct: 306 GGWQRPAVVYNHTTYVTKSTTVINNITN----IRNTRITNNYGGNVTN--NNTTIERNTV 359 Query: 400 RNVNNQTRIDNRREQVAPAAMSMPHFTASDARPGAMP---SLRTQETQQKMALANLHAQP 456 R R ++ A M++PHF A+DARPGA P + A + P Sbjct: 360 RPGAEPMRGQALEQRPGAAPMTIPHFGANDARPGARPAPEAFAQHRANAPHAEVPVPHPP 419 Query: 457 QAQKEAVQATGARPHQEAPQQAQH----------------EQQEQLQQQQQEQRAQKEQQ 500 A + Q R H +A +Q+E LQQ+ Q+ + Q Sbjct: 420 GATHDTRQQAMQREHAAQETRAAAQQQQQQRAEMQRHDAAQQREALQQRNAAQQQEHAQA 479 Query: 501 AAHEREQAQQNAAQQARQQAEERKAQAMKQENLHPQMQAHAAAAPREERPPQHEQKAAPE 560 + Q QQ Q R +A +++ Q+ +MQ H A PRE PQ Q AAPE Sbjct: 480 QQRDEAQQQQRVEAQQRDEARQQQRSEAAQQQQRKEMQPHPEAPPREHAAPQPRQ-AAPE 538 Query: 561 RHEAAPHAQEAHAQAKHEPAKH 582 H APH E+H HE +H Sbjct: 539 -HAHAPHPAESH--PPHESREH 557 >ref|YP_372955.1| hypothetical protein Bcep18194_B2200 [Burkholderia sp. 383] gb|ABB12311.1| hypothetical protein Bcep18194_B2200 [Burkholderia sp. 383] Length = 553 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 225/454 (49%), Positives = 276/454 (60%), Gaps = 31/454 (6%) Query: 47 TTRNRSSAIIVSASLLGAVLALSACQKQ--------DAVPPTAAAAPAAPTTPPYTPPTA 98 T +R ++++SL+ ++L LSAC K + AAAA A T YTPPTA Sbjct: 4 TRAHRPVRTLIASSLIVSLLGLSACNKNGDSSTAAPASDASAAAAAQPASTPVAYTPPTA 63 Query: 99 EQLSQMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQAAEDKEPWDV 158 +QL QMVAPIALFPDKLVA VLAGATYPDQ+ AAN W+ QN +LKG L A D +PWD Sbjct: 64 DQLYQMVAPIALFPDKLVALVLAGATYPDQVTAANNWVMQNPSLKGQALTTAADTQPWDP 123 Query: 159 SVKSLTMFPAVLSQMAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQAGNLKSSSQLK 218 SVK+LT FPAVLSQMA+NP WT SLG A+ NDP DVMNAIQ +R RAQ +G+L+S Q++ Sbjct: 124 SVKALTAFPAVLSQMASNPAWTTSLGQAYYNDPTDVMNAIQVMRQRAQTSGHLRSGGQMR 183 Query: 219 VVSTVRSSDTVRVEDAPAPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPAYNPAVVYGPP 278 V +++ T AP VYAG ++PPP Q I IES+QPD VYVP+YNP VVYG P Sbjct: 184 VTQVEQAAPTGYTPATDAP-VVYAGPAIVPPPAQAIEIESAQPDVVYVPSYNPTVVYGEP 242 Query: 279 VPVYPGYAYRPPSPVANEVV-VGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGG-GGGD 336 V YPGY YRPPS EVV G ++FGVG+ VG AI H DWGWH WGM+WG G Sbjct: 243 VSSYPGYVYRPPSYSTGEVVAAGVITFGVGIAVGAAIFGHHDWGWHAWGMNWGAPRPEGP 302 Query: 337 RPSGDWQRPAVVYKNTTYVSHSTTVINRVTNNNVTVNNTRVVNNNVNNVSNVSNVNNVRN 396 G WQRPAVVY +TTYVS STTVIN +TN + NTR+ NN NV+N + V Sbjct: 303 GWHGGWQRPAVVYNHTTYVSKSTTVINNITN----IRNTRITNNYGGNVTNNTTNTTVER 358 Query: 397 VDERNVNNQTRIDNRREQVAPAAMSMPHFTASDARPGAMPSLRTQETQQKMALANLHAQP 456 + R ++ M+MPHF A+D RPGA PS Sbjct: 359 NAMQPGAQPMRGQAMEQRPGAVPMTMPHFGANDTRPGARPS----------------PDA 402 Query: 457 QAQKEAVQATGARPHQEAPQQAQHEQQEQLQQQQ 490 AQ A + P Q AP + E+Q+ +QQ+ Sbjct: 403 FAQNRANEPHAEAPAQHAPGAMRDERQQAMQQEH 436