BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3945.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777931.1| MetE/MetH family transcription regulator pro... 566 e-159 ref|YP_003978584.1| transcriptional regulator [Achromobacter xyl... 531 e-149 ref|YP_367060.1| LysR family transcriptional regulator [Burkhold... 531 e-149 ref|ZP_06688301.1| HTH-type transcriptional regulator MetR [Achr... 499 e-139 ref|YP_001972354.1| putative LysR family transcriptional regulat... 497 e-138 >ref|YP_003777931.1| MetE/MetH family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66023.1| MetE/MetH family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 286/295 (96%), Positives = 292/295 (98%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ Sbjct: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQL+LAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD Sbjct: 61 AGQYLLAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVA+DHPLA D Sbjct: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVASDHPLADVD 180 Query: 181 YVKPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YVKP+QL+NEVLVTYPVPVDRLDIYTQFL PAGIVPRRHKTIETTDIMLQMVASGRGVAA Sbjct: 181 YVKPRQLSNEVLVTYPVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 Query: 241 LPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIEEARQAQA 295 LPRWLVLEYAEQME+VPVRLGKQGIAKHIYLGARESDVEIDYLRAFI+EARQAQA Sbjct: 241 LPRWLVLEYAEQMEVVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIDEARQAQA 295 >ref|YP_003978584.1| transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15869.1| HTH-type transcriptional regulator MetR 2 [Achromobacter xylosoxidans A8] Length = 296 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 261/292 (89%), Positives = 278/292 (95%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 MLDR+HLSIVQEVE+QGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGR LRLTQ Sbjct: 1 MLDRVHLSIVQEVEKQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRSLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQL LAEERLRQFAQGERG+LRIGMECHPCYQWLLK+VSPYLAAWPD Sbjct: 61 AGQYLLAVANRVLPQLALAEERLRQFAQGERGSLRIGMECHPCYQWLLKIVSPYLAAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPL+KPGLVFEPVFDYEQVLVVA +HPLA + Sbjct: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLNKPGLVFEPVFDYEQVLVVAGNHPLAKEE 180 Query: 181 YVKPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YV PKQL+NEVLV YPVPVDRLDIY FLTPAGI P+RHK IETTDIMLQMVASGRGVAA Sbjct: 181 YVTPKQLSNEVLVAYPVPVDRLDIYNMFLTPAGITPKRHKAIETTDIMLQMVASGRGVAA 240 Query: 241 LPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIEEARQ 292 LPRWLVLEYA+ M +VPVRLGK+GIAKHIYLGARE+DV IDY+RAFIE+A++ Sbjct: 241 LPRWLVLEYADTMNVVPVRLGKKGIAKHIYLGAREADVGIDYMRAFIEQAKK 292 >ref|YP_367060.1| LysR family transcriptional regulator [Burkholderia sp. 383] gb|ABB06416.1| transcriptional regulator, LysR family [Burkholderia sp. 383] Length = 296 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 263/291 (90%), Positives = 279/291 (95%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 MLDRIHLSIVQEVE+QGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGR LRLTQ Sbjct: 1 MLDRIHLSIVQEVEKQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRSLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQLNLAEERL+QFAQGERG LRIGMECHPCYQWLLKVVSPYLAAWPD Sbjct: 61 AGQYLLAVANRVLPQLNLAEERLQQFAQGERGTLRIGMECHPCYQWLLKVVSPYLAAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVA +H LA + Sbjct: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAGNHKLAKEE 180 Query: 181 YVKPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YV+PKQL+NEVLVTYPVPVDRLDIY+ FLTPAGI P+RHK IETTDIMLQMVASGRGVAA Sbjct: 181 YVQPKQLSNEVLVTYPVPVDRLDIYSMFLTPAGIAPKRHKAIETTDIMLQMVASGRGVAA 240 Query: 241 LPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIEEAR 291 LPRWLVLEYA++M++VPVRLG+ GIAKHIYLGARE+DV DYLRAFIE+A+ Sbjct: 241 LPRWLVLEYADKMDVVPVRLGENGIAKHIYLGAREADVGTDYLRAFIEQAK 291 >ref|ZP_06688301.1| HTH-type transcriptional regulator MetR [Achromobacter piechaudii ATCC 43553] gb|EFF74829.1| HTH-type transcriptional regulator MetR [Achromobacter piechaudii ATCC 43553] Length = 307 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 249/295 (84%), Positives = 270/295 (91%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 ML+RIHLSIVQ+VERQGSLTAAAGVL++TQSALSHSMKKLEQQLGTD+WLREGR LRLTQ Sbjct: 1 MLERIHLSIVQQVERQGSLTAAAGVLNLTQSALSHSMKKLEQQLGTDVWLREGRSLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQL+LAEERL QFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD Sbjct: 61 AGQYLLAVANRVLPQLDLAEERLGQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPL KPGL FEPVFDYEQVLVV HPLA A Sbjct: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLFKPGLTFEPVFDYEQVLVVPKGHPLATAA 180 Query: 181 YVKPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YVKP+QLN EVL++YPV ++RLDIY QFL PAG+ P+RHK IETTDIM+QMVASGRGVAA Sbjct: 181 YVKPQQLNQEVLISYPVDIERLDIYNQFLLPAGVTPKRHKAIETTDIMVQMVASGRGVAA 240 Query: 241 LPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIEEARQAQA 295 LPRWLV EYA +M++VPVRLG +GIAK I+LGARE+D IDY+RAFIE AR A Sbjct: 241 LPRWLVEEYAARMDVVPVRLGARGIAKQIFLGAREADTAIDYVRAFIELARHPGA 295 >ref|YP_001972354.1| putative LysR family transcriptional regulator [Stenotrophomonas maltophilia K279a] emb|CAQ46059.1| putative LysR family transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 304 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 246/293 (83%), Positives = 269/293 (91%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 ML+RIHLSIVQ+VE+QGSLTAAAGVL++TQSALSHSMKKLEQQLGTD+WLREGR LRLTQ Sbjct: 1 MLERIHLSIVQQVEQQGSLTAAAGVLNLTQSALSHSMKKLEQQLGTDVWLREGRSLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQL+LAEERL QFAQGERGALRIGMECHPCYQWLLK+VSPYLAAWPD Sbjct: 61 AGQYLLAVANRVLPQLDLAEERLGQFAQGERGALRIGMECHPCYQWLLKIVSPYLAAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPL KPGL F PVFDYEQVLVVA++H LA D Sbjct: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLLKPGLKFIPVFDYEQVLVVASNHALAKVD 180 Query: 181 YVKPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YVKP+QL EVL++YPVP +RLDIY QFL PAGI PRRHK IETTDIM+QMVASGRGVAA Sbjct: 181 YVKPRQLGQEVLISYPVPFERLDIYNQFLLPAGITPRRHKAIETTDIMMQMVASGRGVAA 240 Query: 241 LPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIEEARQA 293 +PRWLV EYA +M++VPVRLG +GI K IYLGARE+D IDYL+AFIE AR + Sbjct: 241 MPRWLVEEYATRMDVVPVRLGAKGIPKQIYLGAREADTSIDYLQAFIELARNS 293