BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3944.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777930.1| glucosamine 6-phosphate synthase [Herbaspiri... 502 e-140 ref|YP_004753261.1| sugar isomerase [Collimonas fungivorans Ter3... 449 e-124 ref|YP_004753629.1| sugar isomeraese [Collimonas fungivorans Ter... 446 e-123 gb|ACF93779.1| NagB2 [Collimonas fungivorans Ter331] 444 e-123 gb|ACF93788.1| NagB1 [Collimonas fungivorans Ter331] 439 e-121 >ref|YP_003777930.1| glucosamine 6-phosphate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ66022.1| glucosamine 6-phosphate synthase protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 310/336 (92%), Positives = 326/336 (97%) Query: 45 MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 104 MLKEARSAADYVAVQLTRDQDRYAALGA+LRAAPPA+IVTVARGSSDHAA YCAYLIMAR Sbjct: 1 MLKEARSAADYVAVQLTRDQDRYAALGARLRAAPPANIVTVARGSSDHAATYCAYLIMAR 60 Query: 105 LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 164 LGRIVASLPMSLVTLN APLQVRDALAIA+SQSGQSPDVVEPIRYFHAQGA+TVALVNQA Sbjct: 61 LGRIVASLPMSLVTLNHAPLQVRDALAIAVSQSGQSPDVVEPIRYFHAQGATTVALVNQA 120 Query: 165 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 224 +SPLA+AAQWSLPLHAGVE+SVAATKSFIASLVA ALLTAHWQDDAALL+ALAQLP ALR Sbjct: 121 DSPLASAAQWSLPLHAGVESSVAATKSFIASLVASALLTAHWQDDAALLNALAQLPDALR 180 Query: 225 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 284 AAC CDWS AV+AL PA+R+M+VGRGIGFPLALEAALK KETCAIQAEAFSGAEIKHGP+ Sbjct: 181 AACACDWSDAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPI 240 Query: 285 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATPDLD 344 ALIE+GYPLLMFA RGPSQAGMLALAAEMR RGA+VLLAAPEDV+ERDLTLPVAATPDLD Sbjct: 241 ALIEEGYPLLMFAIRGPSQAGMLALAAEMRVRGAKVLLAAPEDVVERDLTLPVAATPDLD 300 Query: 345 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 380 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN Sbjct: 301 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 336 >ref|YP_004753261.1| sugar isomerase [Collimonas fungivorans Ter331] gb|AEK62438.1| sugar isomerase [Collimonas fungivorans Ter331] Length = 340 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 261/339 (76%), Positives = 302/339 (89%) Query: 41 LTSLMLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYL 100 +TSLMLKEARSAA++VA+QL++D+DRYA LG +LRAAPP++I+TVARGSSDHAA YCAYL Sbjct: 1 MTSLMLKEARSAAEHVALQLSQDRDRYAELGQRLRAAPPSTILTVARGSSDHAANYCAYL 60 Query: 101 IMARLGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVAL 160 IMARLGRIVASLP+SLVTLN+APL RDALAIAISQSGQSPDV+EPIRYF GA+TVAL Sbjct: 61 IMARLGRIVASLPLSLVTLNKAPLIARDALAIAISQSGQSPDVIEPIRYFRDSGATTVAL 120 Query: 161 VNQAESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLP 220 VN SPLA++A+W+LPLHAG E SVAATKSFIASLVA A L AHWQDDA L A+ LP Sbjct: 121 VNDVASPLASSAEWTLPLHAGAELSVAATKSFIASLVAAARLAAHWQDDATFLAAIDALP 180 Query: 221 QALRAACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIK 280 QAL AA + DW+ A++ L P++R+M+VGRGI PLALE+ALK+KET AIQAEAFSGAEIK Sbjct: 181 QALTAATQLDWTPAIDVLAPSSRIMVVGRGISLPLALESALKFKETSAIQAEAFSGAEIK 240 Query: 281 HGPMALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAAT 340 HGPMALI++GYPLL+FATRGP+QAG+L LA EMR RGA+VLLAAP+DV RDLTLP+AAT Sbjct: 241 HGPMALIDEGYPLLIFATRGPTQAGLLKLAEEMRGRGAKVLLAAPDDVAARDLTLPIAAT 300 Query: 341 PDLDPIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKT 379 PDLDPIVAIQAFYVMAAQL+ ARGMD D+PRHL+KVTKT Sbjct: 301 PDLDPIVAIQAFYVMAAQLAVARGMDPDQPRHLSKVTKT 339 >ref|YP_004753629.1| sugar isomeraese [Collimonas fungivorans Ter331] gb|AEK62806.1| sugar isomeraese [Collimonas fungivorans Ter331] Length = 345 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 256/342 (74%), Positives = 292/342 (85%) Query: 39 KRLTSLMLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCA 98 ++ +SLML+EA SAA++VA+QL RD D YAALGA+LR+A PA+++TVARGSSDHAA YCA Sbjct: 4 QKFSSLMLQEACSAAEHVALQLQRDTDSYAALGARLRSAQPANVLTVARGSSDHAANYCA 63 Query: 99 YLIMARLGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTV 158 YLIMARLGRIVASLPMSLVTL ++PLQ RDALAIAISQSGQSPDV+EPIRYF GA+TV Sbjct: 64 YLIMARLGRIVASLPMSLVTLYKSPLQTRDALAIAISQSGQSPDVIEPIRYFREGGATTV 123 Query: 159 ALVNQAESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQ 218 ALVN A SPLA +A+WSLPLHAG E SVAATKSFI SL A A L AHWQ DA L + Sbjct: 124 ALVNDAASPLAHSAEWSLPLHAGPELSVAATKSFITSLTAAARLVAHWQGDAEFLAQIGA 183 Query: 219 LPQALRAACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAE 278 LP AL+ A E DWS A++ L PA+R+M+VGRG FP+ALEAALK+KET +QAEAFSGAE Sbjct: 184 LPAALQLATETDWSTAIDVLAPASRIMVVGRGTSFPVALEAALKFKETSVLQAEAFSGAE 243 Query: 279 IKHGPMALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVA 338 IKHGPMALI +GYPLL+FATRGP+QAG++ LA EMR RGARVLLAAP DV ERDLTLP+A Sbjct: 244 IKHGPMALINEGYPLLIFATRGPTQAGLVKLAEEMRGRGARVLLAAPADVSERDLTLPLA 303 Query: 339 ATPDLDPIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 380 TPDLDPIVAIQAFYVMAA LS ARG+D DRPRHL+KVTKTN Sbjct: 304 PTPDLDPIVAIQAFYVMAANLSIARGLDPDRPRHLSKVTKTN 345 >gb|ACF93779.1| NagB2 [Collimonas fungivorans Ter331] Length = 336 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 258/335 (77%), Positives = 298/335 (88%) Query: 45 MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 104 MLKEARSAA++VA+QL++D+DRYA LG +LRAAPP++I+TVARGSSDHAA YCAYLIMAR Sbjct: 1 MLKEARSAAEHVALQLSQDRDRYAELGQRLRAAPPSTILTVARGSSDHAANYCAYLIMAR 60 Query: 105 LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 164 LGRIVASLP+SLVTLN+APL RDALAIAISQSGQSPDV+EPIRYF GA+TVALVN Sbjct: 61 LGRIVASLPLSLVTLNKAPLIARDALAIAISQSGQSPDVIEPIRYFRDSGATTVALVNDV 120 Query: 165 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 224 SPLA++A+W+LPLHAG E SVAATKSFIASLVA A L AHWQDDA L A+ LPQAL Sbjct: 121 ASPLASSAEWTLPLHAGAELSVAATKSFIASLVAAARLAAHWQDDATFLAAIDALPQALT 180 Query: 225 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 284 AA + DW+ A++ L P++R+M+VGRGI PLALE+ALK+KET AIQAEAFSGAEIKHGPM Sbjct: 181 AATQLDWTPAIDVLAPSSRIMVVGRGISLPLALESALKFKETSAIQAEAFSGAEIKHGPM 240 Query: 285 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATPDLD 344 ALI++GYPLL+FATRGP+QAG+L LA EMR RGA+VLLAAP+DV RDLTLP+AATPDLD Sbjct: 241 ALIDEGYPLLIFATRGPTQAGLLKLAEEMRGRGAKVLLAAPDDVAARDLTLPIAATPDLD 300 Query: 345 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKT 379 PIVAIQAFYVMAAQL+ ARGMD D+PRHL+KVTKT Sbjct: 301 PIVAIQAFYVMAAQLAVARGMDPDQPRHLSKVTKT 335 >gb|ACF93788.1| NagB1 [Collimonas fungivorans Ter331] Length = 336 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 254/336 (75%), Positives = 287/336 (85%) Query: 45 MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 104 ML+EA SAA++VA+QL RD D YAALGA+LR+A PA+++TVARGSSDHAA YCAYLIMAR Sbjct: 1 MLQEACSAAEHVALQLQRDTDSYAALGARLRSAQPANVLTVARGSSDHAANYCAYLIMAR 60 Query: 105 LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 164 LGRIVASLPMSLVTL ++PLQ RDALAIAISQSGQSPDV+EPIRYF GA+TVALVN A Sbjct: 61 LGRIVASLPMSLVTLYKSPLQTRDALAIAISQSGQSPDVIEPIRYFREGGATTVALVNDA 120 Query: 165 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 224 SPLA +A+WSLPLHAG E SVAATKSFI SL A A L AHWQ DA L + LP AL+ Sbjct: 121 ASPLAHSAEWSLPLHAGPELSVAATKSFITSLTAAARLVAHWQGDAEFLAQIGALPAALQ 180 Query: 225 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 284 A E DWS A++ L PA+R+M+VGRG FP+ALEAALK+KET +QAEAFSGAEIKHGPM Sbjct: 181 LATETDWSTAIDVLAPASRIMVVGRGTSFPVALEAALKFKETSVLQAEAFSGAEIKHGPM 240 Query: 285 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATPDLD 344 ALI +GYPLL+FATRGP+QAG++ LA EMR RGARVLLAAP DV ERDLTLP+A TPDLD Sbjct: 241 ALINEGYPLLIFATRGPTQAGLVKLAEEMRGRGARVLLAAPADVSERDLTLPLAPTPDLD 300 Query: 345 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 380 PIVAIQAFYVMAA LS ARG+D DRPRHL+KVTKTN Sbjct: 301 PIVAIQAFYVMAANLSIARGLDPDRPRHLSKVTKTN 336