BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3940.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753257.1| N-acetyl-D-glucosamine ABC transport system,... 469 e-130 ref|YP_003777926.1| sugar ABC transporter permease [Herbaspirill... 465 e-129 ref|YP_438020.1| sugar ABC transporter permease [Hahella chejuen... 376 e-102 emb|CBA30868.1| hypothetical protein Csp_C25710 [Curvibacter put... 372 e-101 ref|YP_001340510.1| binding-protein-dependent transporter inner ... 365 1e-98 >ref|YP_004753257.1| N-acetyl-D-glucosamine ABC transport system, permease 2 [Collimonas fungivorans Ter331] gb|ACF93775.1| ABC-type sugar transport system permease component [Collimonas fungivorans Ter331] gb|AEK62434.1| N-Acetyl-D-glucosamine ABC transport system, permease protein 2 [Collimonas fungivorans Ter331] Length = 295 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 238/281 (84%), Positives = 261/281 (92%) Query: 122 PSLIQRSFGPAGHLWVHMVLCLYAVIALFPIALILINSVKSRQAIFDNPMALPTVDSFSL 181 P + Q F G +WVH+VLC YAVIALFPIALI+INS+KSR AIFDNP+A PT ++FSL Sbjct: 15 PVVRQSRFANLGRIWVHVVLCAYAVIALFPIALIMINSIKSRDAIFDNPLAFPTPETFSL 74 Query: 182 IGFQKVLAKTHFLLYFGNSLVVTIGSLVLIVLFGAMAGWALSEYKFRGNRLMTLFMAIGI 241 IGF+KVL T+F+LYFGNSLVVT+GSLVLIVLFGAMAGWALSEYKFRGNRLM L++A+GI Sbjct: 75 IGFEKVLHNTNFMLYFGNSLVVTLGSLVLIVLFGAMAGWALSEYKFRGNRLMALYLALGI 134 Query: 242 MIPIRLGTVSILQLVVALDLINTRTALILVYTAQGLPLAVMILSEFMRQIPTELKDAARC 301 MIPIRLGTVSILQLVV+LDLINTRTALILVYTAQGLPLAVMILSEF+RQIP ELKDAARC Sbjct: 135 MIPIRLGTVSILQLVVSLDLINTRTALILVYTAQGLPLAVMILSEFIRQIPKELKDAARC 194 Query: 302 DGVGEFKIFFQIILPLIRPAIGTVAVFTMIPAWNDLWFPLILAPGDQTKTVTLGVQQFIG 361 DGVGEFKIFFQIILPLIRPAI TVAVFTMIPAWNDLWFPLILAP D+TKTVTLGVQQFIG Sbjct: 195 DGVGEFKIFFQIILPLIRPAIATVAVFTMIPAWNDLWFPLILAPSDETKTVTLGVQQFIG 254 Query: 362 QYATDWNSVLAALSMAVIPVLILYMAFSRQLIRGLTSGAVK 402 QY TDWNSVLAALS+AVIP+L++Y+ FSRQLIRGLTSGAVK Sbjct: 255 QYVTDWNSVLAALSLAVIPILVMYVIFSRQLIRGLTSGAVK 295 >ref|YP_003777926.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66018.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 241/283 (85%), Positives = 260/283 (91%) Query: 120 RGPSLIQRSFGPAGHLWVHMVLCLYAVIALFPIALILINSVKSRQAIFDNPMALPTVDSF 179 R P+LIQRSFG AGHLWVH VLCLYAVIALFPIALILINSVK+R AIF+ PMALPT ++ Sbjct: 18 RKPTLIQRSFGQAGHLWVHTVLCLYAVIALFPIALILINSVKTRNAIFEGPMALPTAETL 77 Query: 180 SLIGFQKVLAKTHFLLYFGNSLVVTIGSLVLIVLFGAMAGWALSEYKFRGNRLMTLFMAI 239 + GFQKVLA THFLLYFGNSL VT+ +L LIVLFGAMA WAL+EY+F GNR + F+AI Sbjct: 78 TFAGFQKVLAGTHFLLYFGNSLAVTVAALFLIVLFGAMAAWALTEYRFFGNRALNFFIAI 137 Query: 240 GIMIPIRLGTVSILQLVVALDLINTRTALILVYTAQGLPLAVMILSEFMRQIPTELKDAA 299 GIMIPIRLGTVSILQLVVALDLINTRTAL+LVYTAQGLPLAVMILSEFMRQIP ELKDAA Sbjct: 138 GIMIPIRLGTVSILQLVVALDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAA 197 Query: 300 RCDGVGEFKIFFQIILPLIRPAIGTVAVFTMIPAWNDLWFPLILAPGDQTKTVTLGVQQF 359 RCDGVGE IFF++ILPL+RPAI TVAVFTMIPAWNDLWFPLILAPG+ T+TVTLGVQQF Sbjct: 198 RCDGVGELSIFFRVILPLLRPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQF 257 Query: 360 IGQYATDWNSVLAALSMAVIPVLILYMAFSRQLIRGLTSGAVK 402 IGQYATDWNSVLAALSMAVIPVL+LYMAFSRQLIRGLTSGAVK Sbjct: 258 IGQYATDWNSVLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300 >ref|YP_438020.1| sugar ABC transporter permease [Hahella chejuensis KCTC 2396] gb|ABC33595.1| ABC-type sugar transport system, permease component [Hahella chejuensis KCTC 2396] Length = 294 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 185/268 (69%), Positives = 230/268 (85%) Query: 135 LWVHMVLCLYAVIALFPIALILINSVKSRQAIFDNPMALPTVDSFSLIGFQKVLAKTHFL 194 L VH VL Y V+ALFPI +ILINS K+R+AIF++P+ LP SF+L+GF++VLA++ F Sbjct: 27 LMVHAVLLTYTVVALFPILVILINSFKTRKAIFNDPLGLPDASSFTLVGFEEVLARSSFD 86 Query: 195 LYFGNSLVVTIGSLVLIVLFGAMAGWALSEYKFRGNRLMTLFMAIGIMIPIRLGTVSILQ 254 ++F NSL+VT+ SL ++LFGAMA WAL+EY+FRG + A+GIMIPIRLGTVSILQ Sbjct: 87 VFFFNSLIVTVLSLFFVLLFGAMAAWALTEYRFRGALFIAALFAMGIMIPIRLGTVSILQ 146 Query: 255 LVVALDLINTRTALILVYTAQGLPLAVMILSEFMRQIPTELKDAARCDGVGEFKIFFQII 314 L+V LDL+NTRT+L+LVY AQGLPLAV ILSEF+R IP ELK+AARCD V E+KIFFQI+ Sbjct: 147 LMVDLDLVNTRTSLVLVYIAQGLPLAVYILSEFIRTIPKELKEAARCDNVSEYKIFFQIV 206 Query: 315 LPLIRPAIGTVAVFTMIPAWNDLWFPLILAPGDQTKTVTLGVQQFIGQYATDWNSVLAAL 374 LPLIRPA+ TVAVFTMIP WNDLWFPLILAPG+ T+T+TLGVQQFIGQ+ TDWN+VL++L Sbjct: 207 LPLIRPAMATVAVFTMIPIWNDLWFPLILAPGESTQTITLGVQQFIGQFVTDWNAVLSSL 266 Query: 375 SMAVIPVLILYMAFSRQLIRGLTSGAVK 402 ++A+ PVL+LY+ FSRQLIRGLT+GAVK Sbjct: 267 TLAIAPVLVLYLVFSRQLIRGLTAGAVK 294 >emb|CBA30868.1| hypothetical protein Csp_C25710 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 288 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 184/274 (67%), Positives = 232/274 (84%), Gaps = 1/274 (0%) Query: 129 FGPAGHLWVHMVLCLYAVIALFPIALILINSVKSRQAIFDNPMALPTVDSFSLIGFQKVL 188 F P+ ++VH+ L Y ++AL PI L+ +NS KSR AIF++P+A PT ++FSLIG+ KVL Sbjct: 16 FAPS-RVFVHLTLISYLLLALLPILLVFMNSFKSRDAIFNDPLAWPTPETFSLIGYTKVL 74 Query: 189 AKTHFLLYFGNSLVVTIGSLVLIVLFGAMAGWALSEYKFRGNRLMTLFMAIGIMIPIRLG 248 ++ L+YFGNS +VTI SL I+LFGAMA W LSEY+F+GNR + F A GIM+PIRLG Sbjct: 75 GRSDVLMYFGNSFIVTIASLFFILLFGAMAAWGLSEYRFKGNRWLKFFFAFGIMVPIRLG 134 Query: 249 TVSILQLVVALDLINTRTALILVYTAQGLPLAVMILSEFMRQIPTELKDAARCDGVGEFK 308 TVSILQL+V L+L+NT TAL+LVY AQGLPLA+MILSEFM Q+P ELKDAARCDG+ EF+ Sbjct: 135 TVSILQLMVELNLVNTLTALVLVYVAQGLPLAIMILSEFMGQVPGELKDAARCDGIDEFR 194 Query: 309 IFFQIILPLIRPAIGTVAVFTMIPAWNDLWFPLILAPGDQTKTVTLGVQQFIGQYATDWN 368 IFF +++PLIRPAI TVAVFTM+P WNDLWFPLILAP D+T+T+TLG+QQF+GQYATDWN Sbjct: 195 IFFLVVVPLIRPAIATVAVFTMVPIWNDLWFPLILAPSDKTQTITLGIQQFVGQYATDWN 254 Query: 369 SVLAALSMAVIPVLILYMAFSRQLIRGLTSGAVK 402 +VLA+LS+A++PV+ LY FSRQLIRG+T+GAVK Sbjct: 255 AVLASLSLAIVPVVTLYALFSRQLIRGITAGAVK 288 >ref|YP_001340510.1| binding-protein-dependent transporter inner membrane component [Marinomonas sp. MWYL1] gb|ABR70575.1| binding-protein-dependent transport systems inner membrane component [Marinomonas sp. MWYL1] Length = 287 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 186/266 (69%), Positives = 226/266 (84%) Query: 137 VHMVLCLYAVIALFPIALILINSVKSRQAIFDNPMALPTVDSFSLIGFQKVLAKTHFLLY 196 VH VL Y VIALFPI +++IN+ K R+AIF +P+ LP DSF+L+GFQ+VL ++ F LY Sbjct: 22 VHAVLLAYTVIALFPIIVVVINAFKERRAIFRDPLGLPDSDSFTLVGFQQVLLRSDFGLY 81 Query: 197 FGNSLVVTIGSLVLIVLFGAMAGWALSEYKFRGNRLMTLFMAIGIMIPIRLGTVSILQLV 256 NSLVVTI ++ L++L GAMA WAL+EYKF+GN L+T A+GIMIPIRLGTVSIL L+ Sbjct: 82 SWNSLVVTILAVGLVLLLGAMAAWALTEYKFKGNLLITFLFAMGIMIPIRLGTVSILSLM 141 Query: 257 VALDLINTRTALILVYTAQGLPLAVMILSEFMRQIPTELKDAARCDGVGEFKIFFQIILP 316 V LDL+NT TAL+LVY AQGLPLAV ILSEF+R IP EL +AARCD V E+KIFF +ILP Sbjct: 142 VNLDLVNTLTALVLVYIAQGLPLAVYILSEFVRTIPKELTEAARCDSVSEYKIFFYVILP 201 Query: 317 LIRPAIGTVAVFTMIPAWNDLWFPLILAPGDQTKTVTLGVQQFIGQYATDWNSVLAALSM 376 L++PA+ TVAVFTMIP WNDLWFPLILAPG++T+T+TLGVQQF+GQY TDWNSVL+AL++ Sbjct: 202 LLKPAMATVAVFTMIPIWNDLWFPLILAPGEETRTITLGVQQFVGQYVTDWNSVLSALTL 261 Query: 377 AVIPVLILYMAFSRQLIRGLTSGAVK 402 A++PVLILY FSRQLIRGLTSGAVK Sbjct: 262 AIVPVLILYTIFSRQLIRGLTSGAVK 287