BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3939.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753256.1| N-acetyl-D-glucosamine ABC transport system,... 468 e-130 ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirill... 466 e-129 gb|ACF93774.1| ABC-type sugar transport system permease componen... 464 e-129 ref|YP_438021.1| sugar ABC transporter permease [Hahella chejuen... 337 1e-90 ref|YP_001340511.1| binding-protein-dependent transporter inner ... 337 2e-90 >ref|YP_004753256.1| N-acetyl-D-glucosamine ABC transport system, permease 1 [Collimonas fungivorans Ter331] gb|AEK62433.1| N-Acetyl-D-glucosamine ABC transport system, permease protein 1 [Collimonas fungivorans Ter331] Length = 326 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 259/284 (91%), Positives = 269/284 (94%) Query: 6 PWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSDWSTA 65 PWHIV FLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGL NY TILFDSDWS A Sbjct: 28 PWHIVVFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLANYHTILFDSDWSKA 87 Query: 66 FWNAMWNNVKFFCIHMRLQNPIGLLLATLFSLKGLRGARTYRTLILLPTLLSVVIIGFIW 125 FWNAM NNVKFF IHM LQNPIGLLLATLFSLKGLRGARTYRTLI LPTLLSVVIIGFIW Sbjct: 88 FWNAMLNNVKFFAIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIW 147 Query: 126 QLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYAALLA 185 QLI+SPLWGVGE LMT VGLGDYFAP+LGQESTAL TL L+SVWQY+GIPMMLIYAALLA Sbjct: 148 QLILSPLWGVGEGLMTHVGLGDYFAPWLGQESTALLTLGLVSVWQYVGIPMMLIYAALLA 207 Query: 186 VPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGALAGP 245 VPEEVLEAA+AEGAS+ RIFWQIKLPLI PTLGLVTILTFVANFNAFDLIYSVKGALAGP Sbjct: 208 VPEEVLEAAYAEGASSFRIFWQIKLPLILPTLGLVTILTFVANFNAFDLIYSVKGALAGP 267 Query: 246 NYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVA 289 NY++D+LGTFFYRTFFGYQAQ+GSPTMGAAVATLMFLVIL GVA Sbjct: 268 NYTTDILGTFFYRTFFGYQAQIGSPTMGAAVATLMFLVILLGVA 311 >ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66017.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 257/289 (88%), Positives = 272/289 (94%) Query: 1 MKTARPWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDS 60 MKT R W + LAPAV+IY++FSALPLLDTLRLGFYT+NDAGV SFVGLDNYRTILFD Sbjct: 1 MKTIRAWQLAVLLAPAVLIYALFSALPLLDTLRLGFYTANDAGVRSFVGLDNYRTILFDP 60 Query: 61 DWSTAFWNAMWNNVKFFCIHMRLQNPIGLLLATLFSLKGLRGARTYRTLILLPTLLSVVI 120 DWS AFWNAMWNNVKFFCIHM LQNPIGLLLATLFSLKGLRGARTYRTLI LPTLLSVVI Sbjct: 61 DWSAAFWNAMWNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVI 120 Query: 121 IGFIWQLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIY 180 IGFIWQLI+SPLWGVGEKL+ VGL D+FAP+LGQESTAL TLSLISVWQY+GIPMMLIY Sbjct: 121 IGFIWQLILSPLWGVGEKLLGTVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIY 180 Query: 181 AALLAVPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKG 240 AALLAVPEEVLEAAHAEGASA+RIFWQIKLPLI+PTLGLVTILTFVANFNAFDLIYSVKG Sbjct: 181 AALLAVPEEVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKG 240 Query: 241 ALAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVA 289 ALAGPNY+SDLLGT+FYRTFFGYQAQ+GSPTMGAAVATLMFLVIL GV Sbjct: 241 ALAGPNYASDLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILGGVG 289 >gb|ACF93774.1| ABC-type sugar transport system permease component [Collimonas fungivorans Ter331] Length = 307 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 259/284 (91%), Positives = 269/284 (94%) Query: 6 PWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSDWSTA 65 PWHIV FLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGL NY TILFDSDWS A Sbjct: 9 PWHIVVFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLANYHTILFDSDWSKA 68 Query: 66 FWNAMWNNVKFFCIHMRLQNPIGLLLATLFSLKGLRGARTYRTLILLPTLLSVVIIGFIW 125 FWNAM NNVKFF IHM LQNPIGLLLATLFSLKGLRGARTYRTLI LPTLLSVVIIGFIW Sbjct: 69 FWNAMLNNVKFFAIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIW 128 Query: 126 QLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYAALLA 185 QLI+SPLWGVGE LMT VGLGDYFAP+LGQESTAL TL L+SVWQY+GIPMMLIYAALLA Sbjct: 129 QLILSPLWGVGEGLMTHVGLGDYFAPWLGQESTALLTLGLVSVWQYVGIPMMLIYAALLA 188 Query: 186 VPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGALAGP 245 VPEEVLEAA+AEGAS+ RIFWQIKLPLI PTLGLVTILTFVANFNAFDLIYSVKGALAGP Sbjct: 189 VPEEVLEAAYAEGASSFRIFWQIKLPLILPTLGLVTILTFVANFNAFDLIYSVKGALAGP 248 Query: 246 NYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVA 289 NY++D+LGTFFYRTFFGYQAQ+GSPTMGAAVATLMFLVIL GVA Sbjct: 249 NYTTDILGTFFYRTFFGYQAQIGSPTMGAAVATLMFLVILLGVA 292 >ref|YP_438021.1| sugar ABC transporter permease [Hahella chejuensis KCTC 2396] gb|ABC33596.1| ABC-type sugar transport system, permease components [Hahella chejuensis KCTC 2396] Length = 310 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 186/284 (65%), Positives = 230/284 (80%) Query: 6 PWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSDWSTA 65 PWHI+ FLAP ++IY S PLLDTLRLGF++ + +G FVG+ NY +LF WS Sbjct: 12 PWHILVFLAPGLLIYLTVSVYPLLDTLRLGFFSEDKSGATFFVGMQNYANLLFSEVWSEP 71 Query: 66 FWNAMWNNVKFFCIHMRLQNPIGLLLATLFSLKGLRGARTYRTLILLPTLLSVVIIGFIW 125 FWNA+ NN+ FF IHM LQNPIGLLLA L S LR + TYRTL+ +PT+LSVVI+GF+W Sbjct: 72 FWNALKNNLMFFVIHMLLQNPIGLLLALLLSSPRLRLSGTYRTLLFMPTMLSVVIVGFVW 131 Query: 126 QLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYAALLA 185 QL++SPLWG+ E M +GLGDYF +LG+E TAL TLSLISVWQ++GIPMMLIYAALL Sbjct: 132 QLLLSPLWGISEDFMYNIGLGDYFDAWLGKEGTALVTLSLISVWQFVGIPMMLIYAALLN 191 Query: 186 VPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGALAGP 245 +PE++ +A +GA++ +IFW IKLPL+ PT+ +V+ILTFVANFNAF+LIY+VKGALAGP Sbjct: 192 IPEDLNDAGVVDGANSWQIFWNIKLPLLLPTISMVSILTFVANFNAFELIYAVKGALAGP 251 Query: 246 NYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVA 289 N+SSD++GT FYRTFFG+Q Q GSPTMGAAVATLMFL+IL GVA Sbjct: 252 NFSSDIMGTLFYRTFFGFQLQQGSPTMGAAVATLMFLIILIGVA 295 >ref|YP_001340511.1| binding-protein-dependent transporter inner membrane component [Marinomonas sp. MWYL1] gb|ABR70576.1| binding-protein-dependent transport systems inner membrane component [Marinomonas sp. MWYL1] Length = 311 Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 178/287 (62%), Positives = 226/287 (78%), Gaps = 1/287 (0%) Query: 2 KTARPWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSD 61 K PWH+V FL P ++IY +FS PLLDTL L Y H FVGL N+ T++ D Sbjct: 10 KKPFPWHLVFFLGPGLLIYVVFSVYPLLDTLVLSLYNEQQGQSH-FVGLQNFITLVTDDT 68 Query: 62 WSTAFWNAMWNNVKFFCIHMRLQNPIGLLLATLFSLKGLRGARTYRTLILLPTLLSVVII 121 WS AFWNA+ NN KFF IHM +QNPIGLLLA L S LR + TYRTLI +PT+LSVVII Sbjct: 69 WSQAFWNALGNNFKFFAIHMLVQNPIGLLLAVLLSSPKLRLSGTYRTLIFMPTMLSVVII 128 Query: 122 GFIWQLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYA 181 GF+WQL++SP+WG+ E + +GLG YF +LG+ES+AL TL+ ISVWQ++GIPMMLIYA Sbjct: 129 GFVWQLLLSPIWGISENFLYSIGLGQYFDAWLGKESSALITLAFISVWQFVGIPMMLIYA 188 Query: 182 ALLAVPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGA 241 LL +P+++++A+ +GA++ + FW IKLPLI PT+ +V+ILTFVANFNAF+LIY+VKGA Sbjct: 189 TLLNIPDDIVDASVVDGANSFQTFWHIKLPLILPTIAMVSILTFVANFNAFELIYAVKGA 248 Query: 242 LAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGV 288 LAGP++S+DL+GTFFYRTFFG+Q Q GS +MGAAVATLMFL+IL GV Sbjct: 249 LAGPDFSTDLMGTFFYRTFFGFQLQQGSASMGAAVATLMFLIILVGV 295