BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3938.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirill... 397 e-109 ref|YP_004753256.1| N-acetyl-D-glucosamine ABC transport system,... 369 e-100 gb|ACF93774.1| ABC-type sugar transport system permease componen... 366 2e-99 ref|YP_675249.1| binding-protein-dependent transport systems inn... 288 6e-76 ref|NP_105568.1| sugar ABC transporter, permease protein [Mesorh... 288 1e-75 >ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66017.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 214/219 (97%), Positives = 216/219 (98%) Query: 1 MWNNVKFFCIHMALQNPIGLLLASLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 60 MWNNVKFFCIHMALQNPIGLLLA+LFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL Sbjct: 70 MWNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 129 Query: 61 SPLWGVGEKLLGLVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEE 120 SPLWGVGEKLLG VGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEE Sbjct: 130 SPLWGVGEKLLGTVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEE 189 Query: 121 VLEAAHAEGASGLRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYAS 180 VLEAAHAEGAS +RIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYAS Sbjct: 190 VLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYAS 249 Query: 181 DLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILAGV 219 DLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVIL GV Sbjct: 250 DLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILGGV 288 >ref|YP_004753256.1| N-acetyl-D-glucosamine ABC transport system, permease 1 [Collimonas fungivorans Ter331] gb|AEK62433.1| N-Acetyl-D-glucosamine ABC transport system, permease protein 1 [Collimonas fungivorans Ter331] Length = 326 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 198/219 (90%), Positives = 206/219 (94%) Query: 1 MWNNVKFFCIHMALQNPIGLLLASLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 60 M NNVKFF IHM LQNPIGLLLA+LFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL Sbjct: 92 MLNNVKFFAIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 151 Query: 61 SPLWGVGEKLLGLVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEE 120 SPLWGVGE L+ VGL D+FAPWLGQESTALLTL L+SVWQYVGIPMMLIYAALLAVPEE Sbjct: 152 SPLWGVGEGLMTHVGLGDYFAPWLGQESTALLTLGLVSVWQYVGIPMMLIYAALLAVPEE 211 Query: 121 VLEAAHAEGASGLRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYAS 180 VLEAA+AEGAS RIFWQIKLPLI PTLGLVTILTFVANFNAFDLIYSVKGALAGPNY + Sbjct: 212 VLEAAYAEGASSFRIFWQIKLPLILPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYTT 271 Query: 181 DLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILAGV 219 D+LGT+FYRTFFGYQAQIGSPTMGAAVATLMFLVIL GV Sbjct: 272 DILGTFFYRTFFGYQAQIGSPTMGAAVATLMFLVILLGV 310 >gb|ACF93774.1| ABC-type sugar transport system permease component [Collimonas fungivorans Ter331] Length = 307 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 198/219 (90%), Positives = 206/219 (94%) Query: 1 MWNNVKFFCIHMALQNPIGLLLASLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 60 M NNVKFF IHM LQNPIGLLLA+LFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL Sbjct: 73 MLNNVKFFAIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 132 Query: 61 SPLWGVGEKLLGLVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEE 120 SPLWGVGE L+ VGL D+FAPWLGQESTALLTL L+SVWQYVGIPMMLIYAALLAVPEE Sbjct: 133 SPLWGVGEGLMTHVGLGDYFAPWLGQESTALLTLGLVSVWQYVGIPMMLIYAALLAVPEE 192 Query: 121 VLEAAHAEGASGLRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYAS 180 VLEAA+AEGAS RIFWQIKLPLI PTLGLVTILTFVANFNAFDLIYSVKGALAGPNY + Sbjct: 193 VLEAAYAEGASSFRIFWQIKLPLILPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYTT 252 Query: 181 DLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILAGV 219 D+LGT+FYRTFFGYQAQIGSPTMGAAVATLMFLVIL GV Sbjct: 253 DILGTFFYRTFFGYQAQIGSPTMGAAVATLMFLVILLGV 291 >ref|YP_675249.1| binding-protein-dependent transport systems inner membrane component [Mesorhizobium sp. BNC1] gb|ABG64084.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Chelativorans sp. BNC1] Length = 315 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 145/219 (66%), Positives = 182/219 (83%) Query: 1 MWNNVKFFCIHMALQNPIGLLLASLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLIL 60 +WNNV FF IHMA+QNPIG+LLA+L S LR YRT IF+PT+LS VI+GF+W+LIL Sbjct: 81 LWNNVWFFIIHMAVQNPIGILLAALLSNPRLRLRGFYRTAIFVPTILSFVIVGFVWKLIL 140 Query: 61 SPLWGVGEKLLGLVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEE 120 SP+WGV LL LVGL FAPWLG+E AL TL LISVWQ+VGIPMMLIYAALLA+P+E Sbjct: 141 SPIWGVAPSLLDLVGLKSLFAPWLGKEEYALTTLGLISVWQFVGIPMMLIYAALLAIPDE 200 Query: 121 VLEAAHAEGASGLRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYAS 180 +LEAA +G +G+ FW+IKLPLI P++G++++LTFV NFNAFDLIYS +GA+AGPN+++ Sbjct: 201 ILEAAEYDGITGMAQFWKIKLPLILPSIGIISVLTFVGNFNAFDLIYSSQGAMAGPNFST 260 Query: 181 DLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILAGV 219 D+LGT+ YRTFFG+Q QIG P MGA +A++MF +ILAGV Sbjct: 261 DILGTFLYRTFFGFQLQIGDPNMGATIASMMFFIILAGV 299 >ref|NP_105568.1| sugar ABC transporter, permease protein [Mesorhizobium loti MAFF303099] dbj|BAB51354.1| sugar ABC transporter, permease protein [Mesorhizobium loti MAFF303099] Length = 334 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 142/217 (65%), Positives = 178/217 (82%) Query: 3 NNVKFFCIHMALQNPIGLLLASLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIWQLILSP 62 NNV FF IHM +QNPIG++LA+L S LR A YRT IF+PT+LS VI+GF W+LILSP Sbjct: 102 NNVWFFIIHMLVQNPIGVMLAALLSSPRLRFAAFYRTAIFVPTILSFVIVGFAWKLILSP 161 Query: 63 LWGVGEKLLGLVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAVPEEVL 122 LWGV ++ LVGL F PWLG+E AL LSLISVWQ+VGIPMMLIYAALL++P+EV+ Sbjct: 162 LWGVAPHMMDLVGLKSLFTPWLGKEEYALTALSLISVWQFVGIPMMLIYAALLSIPDEVI 221 Query: 123 EAAHAEGASGLRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPNYASDL 182 EAA +G +G+ FW+IKLPLI P++G+++ILTFV NFNAFDLIY+ +GALAGPNY++D+ Sbjct: 222 EAAECDGITGMSQFWKIKLPLILPSIGIISILTFVGNFNAFDLIYTAQGALAGPNYSTDI 281 Query: 183 LGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILAGV 219 LGT+ YR FFG+Q Q+G P MGAA+AT+MFL+IL GV Sbjct: 282 LGTFLYRAFFGFQLQVGDPNMGAAIATMMFLIILGGV 318