BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3935.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777923.1| sugar ABC transporter periplasmic protein [H... 793 0.0 ref|YP_004753254.1| sugar ABC transporter periplasmic protein [C... 523 e-146 emb|CBA30860.1| hypothetical protein Csp_C25670 [Curvibacter put... 361 2e-97 ref|YP_004394590.1| sugar ABC transporter periplasmic protein [A... 269 9e-70 ref|YP_854672.1| ABC-type sugar transport system, periplasmic co... 266 5e-69 >ref|YP_003777923.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ66015.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 401/446 (89%), Positives = 422/446 (94%), Gaps = 1/446 (0%) Query: 1 MIKTKRPANARVGPARFGLAVLCLLALALGLAALPAHAQVPAAGPSPATGN-ALQVLHWW 59 M +TKRPANAR GPAR GLA +CL AL L L LPA AQ P++ PAT +LQVLHWW Sbjct: 1 MTRTKRPANARTGPARCGLAAVCLCALTLWLGGLPAQAQSPSSPVPPATATGSLQVLHWW 60 Query: 60 TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF 119 TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF Sbjct: 61 TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF 120 Query: 120 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLFYNTAIFK 179 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSL+YN A+FK Sbjct: 121 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFK 180 Query: 180 RYNLAPPKTWDDFDQIVKKLQGTGIVPLAQSAEAWQLATLFENIALAESGPAYYRRLFVE 239 RYNL+PPKTWD+FDQIVKKLQG+G+VPLAQSAEAWQLATLFEN+ALAESGPAYYR+LFVE Sbjct: 181 RYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAYYRKLFVE 240 Query: 240 MSPAAYLDARMLHILKRLRSLASAMPQPVRERPWTEVARSVVSGEAAMLIMGDWAKGELN 299 MSPAAYLDARMLHILKRLR+LA AM QPVRERPWTEVARS+VSGEAAMLIMGDWAKGELN Sbjct: 241 MSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGDWAKGELN 300 Query: 300 AWGMEVDQQFGCAPAPGTGDFHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR 359 AWGMEVDQQFGCAPAPGTG++HLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR Sbjct: 301 AWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR 360 Query: 360 IKGSIPVLRAADPHMDRCARDSWRAFSKGPAWQAPSLVHRMATDDTTKDAIVAEVQRFFL 419 IKGSIPVLRAADPHMDRCARDSWR FSKGP WQAPSLVHRMATDDTTKDAIVAEVQRFF+ Sbjct: 361 IKGSIPVLRAADPHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAIVAEVQRFFM 420 Query: 420 DRNLSEEQTQKRLAAIARTLARNRND 445 DR++SEEQ QKRLA IARTL+RNRND Sbjct: 421 DRSISEEQAQKRLATIARTLSRNRND 446 >ref|YP_004753254.1| sugar ABC transporter periplasmic protein [Collimonas fungivorans Ter331] gb|AEK62431.1| ABC-type sugar transport system, periplasmic component [Collimonas fungivorans Ter331] Length = 466 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 275/425 (64%), Positives = 337/425 (79%), Gaps = 4/425 (0%) Query: 19 LAVLCLLALALGLAALPAHAQVP-AAGPSPATGNALQVLHWWTSASERQAINVVVNQLAK 77 LA CLL + L A A+A P +A PAT +LQV+HWWTSASER++++V+ +LA+ Sbjct: 39 LASGCLLGCLITLRAGMANAAPPVSAAGQPAT--SLQVVHWWTSASERKSVDVLATRLAE 96 Query: 78 QDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVFGEWADLGLLLELDNVAVQ 137 +IQWRD+AIPGGAG+GA+KVLKSMVLA +APE TQLNG+VFGEWADLGLLLELD+VA Sbjct: 97 DNIQWRDMAIPGGAGLGASKVLKSMVLAGKAPEATQLNGIVFGEWADLGLLLELDDVAAP 156 Query: 138 GNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLFYNTAIFKRYNLAPPKTWDDFDQIVK 197 GNW+K +FPTVWSL+ N GHVVAAPLGIHRIN+LFYN +F R LA PKTW +F++ + Sbjct: 157 GNWQKLLFPTVWSLVRNRGHVVAAPLGIHRINNLFYNKKVFDRLGLAAPKTWPEFERAAE 216 Query: 198 KLQGTGIVPLAQSAEAWQLATLFENIALAESGPAYYRRLFVEMSPAAYLDARMLHILKRL 257 KL+ G+ PLAQS+EAWQ+ATLFE + LAESGPAYYR LFV+++PAA+ DARM H LKRL Sbjct: 217 KLRQAGVTPLAQSSEAWQVATLFETLVLAESGPAYYRSLFVDLNPAAFGDARMTHALKRL 276 Query: 258 RSLASAMPQPVRERPWTEVARSVVSGEAAMLIMGDWAKGELNAWGMEVDQQFGCAPAPGT 317 R+L MPQP+RERPW ++ R + GEAAM +MGDWAKGEL AWG+ DQ F CA PGT Sbjct: 277 RALKEWMPQPLRERPWPDMTRQLADGEAAMFVMGDWAKGELLAWGLNTDQDFSCAAVPGT 336 Query: 318 GDFHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNRIKGSIPVLRAAD-PHMDR 376 D+HLYS DTLAMFAG+Y+HQP QE LA+L MS VQS YN++KG+I V RA D MD Sbjct: 337 ADYHLYSVDTLAMFAGDYSHQPAQEKLAQLIMSQPVQSAYNQVKGAISVWRAPDLSKMDS 396 Query: 377 CARDSWRAFSKGPAWQAPSLVHRMATDDTTKDAIVAEVQRFFLDRNLSEEQTQKRLAAIA 436 CAR SW AFSKG A+QAPSLVHRMA D+T KDAIVAEV R+F+D + E Q++LA+IA Sbjct: 397 CARASWSAFSKGSAFQAPSLVHRMAADETAKDAIVAEVHRYFVDDKMGESDIQRKLASIA 456 Query: 437 RTLAR 441 R+L++ Sbjct: 457 RSLSK 461 >emb|CBA30860.1| hypothetical protein Csp_C25670 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 420 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 187/395 (47%), Positives = 248/395 (62%), Gaps = 1/395 (0%) Query: 50 GNALQVLHWWTSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAP 109 G + VLHWWTSASER+A + + QLA+ +QW+D AIPGG GM A KVLKS VL P Sbjct: 26 GVPMDVLHWWTSASERKAADQLALQLAQAGVQWKDAAIPGGGGMAAVKVLKSRVLMGDPP 85 Query: 110 EVTQLNGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRIN 169 +V QL G +WAD+GL++ L+ VA + W + +FPTV L+ G V+AAPLGIHRIN Sbjct: 86 DVAQLIGTTLTDWADIGLVMPLNAVAQRQRWSQVLFPTVLELVTYKGDVIAAPLGIHRIN 145 Query: 170 SLFYNTAIFKRYNLAPPKTWDDFDQIVKKLQGTGIVPLAQSAEAWQLATLFENIALAESG 229 +L YN +F R L PP+TW +F+ +KLQ GI PLA S E WQ+AT+FE + L ++G Sbjct: 146 TLLYNRKVFGRLGLTPPRTWAEFEMTARKLQAKGIRPLAWSDEPWQIATVFETVLLGDAG 205 Query: 230 PAYYRRLFVEMSPAAYLDARMLHILKRLRSLASAMPQPVRERPWTEVARSVVSGEAAMLI 289 PA YR L V+ +A++D R+ L+RLR L + ERPWTE R +++ A M+I Sbjct: 206 PALYRELIVQRKSSAWMDVRVERALQRLRWLRALATDAPVERPWTESTRELMADNAGMMI 265 Query: 290 MGDWAKGELNAWGMEVDQQFGCAPAPGTGDFHLYSTDTLAMFAGNYAHQPMQETLARLTM 349 MGDWAKGEL AWG + FGCA PGT + HLYS DTLAM + QE +A + Sbjct: 266 MGDWAKGELMAWGASPVRDFGCAVVPGTENMHLYSIDTLAMLVSARPREAAQEKMAEVVT 325 Query: 350 SPAVQSEYNRIKGSIPVLRAADP-HMDRCARDSWRAFSKGPAWQAPSLVHRMATDDTTKD 408 Q YNR KG++PV R DP +D CARDSW F+ + PSL HRMA D+ KD Sbjct: 326 GIPAQLAYNRFKGAVPVRRDMDPAALDGCARDSWETFASPRNARVPSLAHRMAADEAIKD 385 Query: 409 AIVAEVQRFFLDRNLSEEQTQKRLAAIARTLARNR 443 A+ + R+ D + ++ Q+RLA++ R + R Sbjct: 386 AVAQTLWRYLTDPRMETQEAQRRLASVIRAPSAER 420 >ref|YP_004394590.1| sugar ABC transporter periplasmic protein [Aeromonas veronii B565] gb|AEB51973.1| ABC-type sugar transport system, periplasmic component [Aeromonas veronii B565] Length = 412 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 154/397 (38%), Positives = 213/397 (53%), Gaps = 4/397 (1%) Query: 46 SPATGNALQVLHWWTSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLA 105 +P + ++VLHWWTS E +A+ V+ ++ KQ QW D A+ GG G A VLKS LA Sbjct: 14 APVAASQVEVLHWWTSGGEAKAVEVLKSEWTKQGNQWNDFAVQGGGGKSAMTVLKSRALA 73 Query: 106 NRAPEVTQLNGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGI 165 PE L G EWA LG L +L +A W QM P V + L+ +G ++A P GI Sbjct: 74 ANPPEAAHLKGYELKEWAGLGFLRDLSPMAEHLGWYSQMPPMVRATLSQNGALMAVPTGI 133 Query: 166 HRINSLFYNTAIFKRYNLAPPKTWDDFDQIVKKLQGTGIVPLAQSAEAWQLATLFENIAL 225 HR+N L+ N +F+R L PP +W F + +L+ GI PLA E WQLA LFE +AL Sbjct: 134 HRVNWLWLNRKVFERNKLTPPTSWAQFVTVADQLKKRGITPLAIGNEPWQLAVLFETVAL 193 Query: 226 AESGPAYYRRLFVEMSPAAYLDARMLHILKRLRSLASAMPQPVRERPWTEVARSVVSGEA 285 E G +YR+ F+E A M+ +L R + L + +PQ W + + SG A Sbjct: 194 GEGGKEFYRKAFLEQDSATLTGPDMVRVLTRFQQLRAYVPQKYAGLKWHQATNLLESGGA 253 Query: 286 AMLIMGDWAKGELNAWGMEVDQQFGCAPAPGTGDFHLYSTDTLAMFAG-NYAHQPMQETL 344 AM +MGDW KGEL+A + C P+PG+ Y+ D++AMF + A Q L Sbjct: 254 AMQVMGDWVKGELSAGNYRPGEDIACLPSPGSAGLFSYNLDSIAMFKQRDPAQLQAQGDL 313 Query: 345 ARLTMSPAVQSEYNRIKGSIPVLRAAD-PHMDRCARDSWRAF--SKGPAWQAPSLVHRMA 401 A+L M+P Q E+NR+KGSIP L D DRCA S++ F ++ PS+ MA Sbjct: 314 AQLLMTPQFQEEFNRVKGSIPALTNPDMSKFDRCAVRSYQDFLLAEKQDNLLPSMAEGMA 373 Query: 402 TDDTTKDAIVAEVQRFFLDRNLSEEQTQKRLAAIART 438 T + AI+ + FF D + EQT L R+ Sbjct: 374 TPTNMRQAILDVLSNFFNDPKANPEQTALHLERAMRS 410 >ref|YP_854672.1| ABC-type sugar transport system, periplasmic component [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gb|ABK37806.1| ABC-type sugar transport system, periplasmic component [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 412 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 154/396 (38%), Positives = 212/396 (53%), Gaps = 4/396 (1%) Query: 47 PATGNALQVLHWWTSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLAN 106 P + ++VLHWWTS E +A+ V+ ++ +Q QW D A+ GG G A VLKS LA Sbjct: 15 PVGASQVEVLHWWTSGGEARAVEVLKSEWTEQGNQWNDFAVQGGGGKSAMTVLKSRALAA 74 Query: 107 RAPEVTQLNGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIH 166 PE L G EWA LG L +L +A W Q+ P V L+ +G ++A P GIH Sbjct: 75 NPPEAAHLKGFELREWAGLGFLRDLTPMAEHLGWYPQLPPMVRETLSQNGALMAVPTGIH 134 Query: 167 RINSLFYNTAIFKRYNLAPPKTWDDFDQIVKKLQGTGIVPLAQSAEAWQLATLFENIALA 226 R+N L+ N IF+R L PP +W F + +L+ GI PLA E WQLA LFE +AL Sbjct: 135 RVNWLWLNRKIFERNKLTPPTSWAQFVTVADRLKQQGITPLAIGNEPWQLAVLFETVALG 194 Query: 227 ESGPAYYRRLFVEMSPAAYLDARMLHILKRLRSLASAMPQPVRERPWTEVARSVVSGEAA 286 E G A+YR+ FVE A M+ +L R + L +P+ W + + SG AA Sbjct: 195 EGGKAFYRKAFVEQDSATLTGPDMVRVLTRFQQLRGYVPEKYAGLKWHQATNLLESGGAA 254 Query: 287 MLIMGDWAKGELNAWGMEVDQQFGCAPAPGTGDFHLYSTDTLAMFAG-NYAHQPMQETLA 345 M IMGDW KGEL+A + C P+PG+ + Y+ D++AMF + A Q LA Sbjct: 255 MQIMGDWVKGELSAGNYRPGEDIECLPSPGSANLFSYNLDSIAMFKQRDPAQLQAQGELA 314 Query: 346 RLTMSPAVQSEYNRIKGSIPVLRAAD-PHMDRCARDSWRAF--SKGPAWQAPSLVHRMAT 402 +L M+P Q E+NR+KGSIP L D DRCA S++ F ++ PS+ MAT Sbjct: 315 QLLMTPRFQQEFNRVKGSIPALTKPDMSKFDRCAIRSYQDFLLAEREGNLLPSMAEGMAT 374 Query: 403 DDTTKDAIVAEVQRFFLDRNLSEEQTQKRLAAIART 438 + AI+ + FF D + +QT L R+ Sbjct: 375 PTNMRQAIMDVLSNFFNDPRANPQQTALHLERAMRS 410