BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3934.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777922.1| response regulator protein [Herbaspirillum s... 439 e-121 ref|YP_004753253.1| winged helix family two component transcript... 407 e-112 emb|CBA30858.1| Transcriptional regulatory protein ompR [Curviba... 337 7e-91 ref|YP_004315086.1| transcriptional regulator [Marinomonas medit... 245 5e-63 ref|YP_001343177.1| two component transcriptional regulator [Mar... 244 1e-62 >ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66014.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 229/237 (96%), Positives = 232/237 (97%) Query: 1 MTRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGAAFLTEFQRFADELSLVILDVMLPD 60 MTRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGA FL EFQR ADELSLVILDVMLPD Sbjct: 1 MTRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPD 60 Query: 61 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR Sbjct: 61 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 Query: 121 RIGIDNSAAPRYYRFAGFSLDTVERTLTDSAGEVVPLTGMDYQLLKYFVEHPGDVLDRNV 180 RIGID+SAAPRYYRFAGFSLDTVERTL DS G++VPLTGMDYQLLKYFVEHPGDVLDRNV Sbjct: 121 RIGIDSSAAPRYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNV 180 Query: 181 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAAAA 237 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAAAA Sbjct: 181 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAAAA 237 >ref|YP_004753253.1| winged helix family two component transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62430.1| two component transcriptional regulator, winged helix family [Collimonas fungivorans Ter331] Length = 236 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 208/233 (89%), Positives = 220/233 (94%) Query: 3 RKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGAAFLTEFQRFADELSLVILDVMLPDTD 62 RKILIVDDDQKTRTLLKAYLEKNQYEVRLAH+G AFL EFQR+A+ELSLVILDVMLPDTD Sbjct: 2 RKILIVDDDQKTRTLLKAYLEKNQYEVRLAHNGEAFLAEFQRYAEELSLVILDVMLPDTD 61 Query: 63 GFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 GFALCK VRRKSNVP+IMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRR Sbjct: 62 GFALCKTVRRKSNVPIIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRT 121 Query: 123 GIDNSAAPRYYRFAGFSLDTVERTLTDSAGEVVPLTGMDYQLLKYFVEHPGDVLDRNVLC 182 GID++ APRYYRF GF+LDTVERTL+D G+ V LTG+DYQLLKYFVEHPGDVLDR VLC Sbjct: 122 GIDSAVAPRYYRFVGFTLDTVERTLSDPDGQPVALTGLDYQLLKYFVEHPGDVLDRGVLC 181 Query: 183 EETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAA 235 EETRGRD GPLDRSLDVQISKLRLRLNDGG+ PHLIKTVRGAGYVFSADV+AA Sbjct: 182 EETRGRDVGPLDRSLDVQISKLRLRLNDGGKDPHLIKTVRGAGYVFSADVAAA 234 >emb|CBA30858.1| Transcriptional regulatory protein ompR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 248 Score = 337 bits (865), Expect = 7e-91, Method: Composition-based stats. Identities = 172/237 (72%), Positives = 202/237 (85%), Gaps = 1/237 (0%) Query: 1 MTRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGAAFLTEFQRFADELSLVILDVMLPD 60 MTR +L+VDDDQKTR LLK YLEK+QYEVR+AHDGA+F EF+RF DELSLVILDVMLPD Sbjct: 10 MTRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPD 69 Query: 61 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 TDGF LC++VR +S VP+IMLTAS+D+TDR+VGLELGADDYIAKPY+PRELLARIKAIHR Sbjct: 70 TDGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHR 129 Query: 121 RIGIDNSAAP-RYYRFAGFSLDTVERTLTDSAGEVVPLTGMDYQLLKYFVEHPGDVLDRN 179 R+ + AP R+ +FAGFS+D VER LTD G+ V LT MD+ LL++F EH G+ LDR Sbjct: 130 RMQLGAPGAPVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETLDRA 189 Query: 180 VLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAAA 236 L E+TRGRD GPLDRSLDVQ+S+LR RL+D G+QP LIKTVRG+GYVFSADVSA A Sbjct: 190 RLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADVSAHA 246 >ref|YP_004315086.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gb|ADZ93250.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 298 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 171/240 (71%), Gaps = 12/240 (5%) Query: 2 TRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGAAFLTEFQRFAD-ELSLVILDVMLPD 60 +R + +VDDD R+LLK+YLE++Q++V A G AFL +F AD + LVILDVMLP Sbjct: 54 SRYVYVVDDDNDIRSLLKSYLERHQFQVLTAESGEAFLEDFH--ADLNVELVILDVMLPG 111 Query: 61 TDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 DGFA+C+A+R +S VPVIMLTA+SDE DR++GLE+GADDY+AKP++PRELLAR+KAI R Sbjct: 112 QDGFAVCRALRTQSEVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAILR 171 Query: 121 RIGIDN--------SAAPRYYRFAGFSLDTVERTLTDSAGEVVPLTGMDYQLLKYFVEHP 172 RI ++ + A RYY+FA F+LDT+ R L + LTG D+ LL F+ P Sbjct: 172 RIEPNDPIKEEQEKAKASRYYQFAQFTLDTLSRELHHEDSKEA-LTGADFNLLMLFLASP 230 Query: 173 GDVLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADV 232 G VL R+ + E TRGRD+ PLDR +DV +S+LR RL + R P LIKTVRG GY+ +A V Sbjct: 231 GAVLSRDYIAENTRGRDSAPLDRFIDVHVSRLRQRLKEDARHPQLIKTVRGEGYIMTATV 290 >ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gb|ABR73242.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 244 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 133/235 (56%), Positives = 167/235 (71%), Gaps = 7/235 (2%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGAAFLTEFQRFADELSLVILDVMLPDTDGF 64 I +VDDD + RTLLK YLEK+Q+ V A G FL F R E+ LVILD+MLP DGF Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANF-RAEQEVDLVILDIMLPGQDGF 65 Query: 65 ALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGI 124 A+C+++R +S VPVIMLTA+SDE DR++GLE+GADDY+AKP++PRELLARIKAI RR+ Sbjct: 66 AVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEH 125 Query: 125 DN--SAAP---RYYRFAGFSLDTVERTLTDSAGEVVPLTGMDYQLLKYFVEHPGDVLDRN 179 AP R+YRFA F+LDT+ R L E L+G DY LL F+ HPG VL R Sbjct: 126 TEVVEIAPVTHRFYRFAQFTLDTLSRELY-FKDEKESLSGADYNLLMLFLTHPGAVLTRE 184 Query: 180 VLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSA 234 ++ E TRGRD+ PLDR +DV +S+LR RL + RQP LIKT+RG GY+ +A V A Sbjct: 185 LIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVEA 239