BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3933.p (523 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum sero... 871 0.0 ref|YP_004753252.1| putative Signal transduction histidine kinas... 739 0.0 emb|CBA30856.1| hypothetical protein Csp_C25650 [Curvibacter put... 470 e-130 ref|ZP_01077039.1| putative Signal transduction histidine kinase... 407 e-111 ref|YP_004315087.1| integral membrane sensor signal transduction... 396 e-108 >ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ66013.1| sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 478 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 466/478 (97%), Positives = 471/478 (98%) Query: 46 LPDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMT 105 +PDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMT Sbjct: 1 MPDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMT 60 Query: 106 LPPNYRPLMIQQLREMGGTRFFINANSSAVPVKSIGDSRLANLAIDVAAQTLREDLPFLP 165 LPPNYRPLMIQQLREMGGTRFFINANSSAV VKSIGDSRLA LAIDVAAQTLREDLPFLP Sbjct: 61 LPPNYRPLMIQQLREMGGTRFFINANSSAVAVKSIGDSRLAKLAIDVAAQTLREDLPFLP 120 Query: 166 EARLAFAWPDGLPVASDGLTVNDLPDNWVQHILLTKPNSAPVLVIQMQVESGRWIYLAAL 225 EARLAFAWPDGLPVASDGLTVNDLPDNWVQHIL+TKPNSAPVLVIQMQVESGRWIYLAAL Sbjct: 121 EARLAFAWPDGLPVASDGLTVNDLPDNWVQHILMTKPNSAPVLVIQMQVESGRWIYLAAL 180 Query: 226 MPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETVP 285 MPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETVP Sbjct: 181 MPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETVP 240 Query: 286 DLPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELLDDDD 345 LPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTEL+DDD Sbjct: 241 SLPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELMDDDA 300 Query: 346 MRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPS 405 MRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPS Sbjct: 301 MRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPS 360 Query: 406 GINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDAM 465 GINV+AKPLALKRAIGNLFDNALYYGQKVEISIRPS G GDLVEIEIRDHGPGVPEDAM Sbjct: 361 GINVIAKPLALKRAIGNLFDNALYYGQKVEISIRPSPGAEGDLVEIEIRDHGPGVPEDAM 420 Query: 466 GTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILPAR 523 GTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGL+ATIILPAR Sbjct: 421 GTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLMATIILPAR 478 >ref|YP_004753252.1| putative Signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK62429.1| putative Signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 504 Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 366/482 (75%), Positives = 422/482 (87%) Query: 41 LLDWMLPDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAI 100 LL W+LP +LLGRLSVVM+FGVLVTQVAGGLIW+ QLRSK+E ET+TAAQHLAHSAASA+ Sbjct: 22 LLSWLLPHTLLGRLSVVMVFGVLVTQVAGGLIWSAQLRSKAEVETKTAAQHLAHSAASAV 81 Query: 101 RYFMTLPPNYRPLMIQQLREMGGTRFFINANSSAVPVKSIGDSRLANLAIDVAAQTLRED 160 R+FM+LP NYRP++IQQLREMGGTRFF+N N V + I D+ LA++A+ TL+ D Sbjct: 82 RFFMSLPANYRPILIQQLREMGGTRFFVNTNDGPVTIHKIADNTLADMALADIGATLKTD 141 Query: 161 LPFLPEARLAFAWPDGLPVASDGLTVNDLPDNWVQHILLTKPNSAPVLVIQMQVESGRWI 220 LPFLP RLAFAWPD L V+ GL V DLPD+WVQH LL KPN APVLVIQ ++E G W+ Sbjct: 142 LPFLPGFRLAFAWPDDLMVSPQGLQVADLPDSWVQHTLLIKPNPAPVLVIQTELEPGNWL 201 Query: 221 YLAALMPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGK 280 YLAALMPNPYFLDSDNPL +RL+LQGLSLA +LLL+ILVVRWTTRPLAAL+DAAEAFGK Sbjct: 202 YLAALMPNPYFLDSDNPLSPERLLLQGLSLATVLLLSILVVRWTTRPLAALSDAAEAFGK 261 Query: 281 GETVPDLPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTEL 340 GE P+LPETGSRE++KTARAF MRERIKRYL+DRERLFVSISHDLRTPITRLKLRTEL Sbjct: 262 GEAAPELPETGSREFIKTARAFRAMRERIKRYLDDRERLFVSISHDLRTPITRLKLRTEL 321 Query: 341 LDDDDMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI 400 LDD+ +R++FH+DLDELDMMVKGALQSVKDSDIHENRTEV+LD L+LRMIRDAR+AGHE+ Sbjct: 322 LDDEHLRSEFHEDLDELDMMVKGALQSVKDSDIHENRTEVKLDTLILRMIRDARMAGHEV 381 Query: 401 AFTPSGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGV 460 AF +G+ VMAKPLALKRAIGNLFDNAL+YGQKVEIS+ G ++I+IRDHGPGV Sbjct: 382 AFAETGLTVMAKPLALKRAIGNLFDNALHYGQKVEISVAGLINESGSNIQIQIRDHGPGV 441 Query: 461 PEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIIL 520 PE+A+ +LF+PY RLEHGR QN+GGMGLGLGI+RNIVQAHGGEL LRNH EGGL+ATI+L Sbjct: 442 PEEALHSLFEPYTRLEHGRDQNAGGMGLGLGIARNIVQAHGGELHLRNHTEGGLVATIVL 501 Query: 521 PA 522 PA Sbjct: 502 PA 503 >emb|CBA30856.1| hypothetical protein Csp_C25650 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 491 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 247/478 (51%), Positives = 333/478 (69%), Gaps = 5/478 (1%) Query: 46 LPDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMT 105 LPDSLLGR+ VVM GV+ Q+ G L+WA QLR + AE +A +A +AA +IR+F Sbjct: 14 LPDSLLGRIVVVMALGVISAQLVGTLLWARQLRESARAEALSAGHAIALNAAGSIRFFRD 73 Query: 106 LPPNYRPLMIQQLREMGGTRFFINANSSAVPVKSIGDSRLANLAIDVAAQTLREDLPFLP 165 LPP +RP++I+QLR MGGTRFFIN N + VPV+ + + L + ++ L +L Sbjct: 74 LPPQFRPILIEQLRTMGGTRFFINVNKARVPVQPVEGNGLVDAVVEAMQGDLTRNLAGNT 133 Query: 166 EA-RLAFAWPDGLPVASDGLTVNDLPDNWVQHILLTKPNSAPVLVIQMQVESGRWIYLAA 224 +A +AFAWP+ L V+ DG V DLPD+WV+ LL +P APVLVIQ + E GRW+YLA Sbjct: 134 QAPSVAFAWPESLQVSDDGRMVRDLPDSWVEATLLLRPRPAPVLVIQAEFEPGRWLYLAT 193 Query: 225 LMPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETV 284 MP+PYFL++ NPL DR+ LQ ++L L++++L+VR RPL +A AA AFG Sbjct: 194 TMPDPYFLENANPLTWDRVALQLVTLLTALVISVLLVRGLIRPLNKIASAANAFGSDTAP 253 Query: 285 PDLPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELLDDD 344 +PETG+ E +TARAF+ M+ RI+ YL DRERLF+ ISH L+TPI RLKLRTELLDDD Sbjct: 254 ESVPETGTAELRRTARAFNEMQARIQGYLVDRERLFLGISHGLKTPIMRLKLRTELLDDD 313 Query: 345 DMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTP 404 +R +FH+DLD+LD+MVK ALQSVKD+DIHEN T VRLD L+ R+ + I T Sbjct: 314 TLRAEFHEDLDDLDVMVKAALQSVKDTDIHENLTPVRLDTLLARLAQRPIHPDATIECTA 373 Query: 405 SGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDA 464 ++V+ KPLAL+RA+ NL DNA+ YG++V++ + + G +E+RD GPG+ + + Sbjct: 374 EPVSVLGKPLALERALSNLLDNAVLYGERVQVRL----SLQGSRALVEVRDFGPGIAQAS 429 Query: 465 MGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILPA 522 M F+P+VRL HG+ QN G GLGLGI+RNI+QAHGGE+ L NH EGGL+ T++L A Sbjct: 430 MSAAFEPHVRLSHGQQQNRTGTGLGLGIARNIIQAHGGEIRLHNHAEGGLVVTVLLAA 487 >ref|ZP_01077039.1| putative Signal transduction histidine kinase [Marinomonas sp. MED121] gb|EAQ64914.1| putative Signal transduction histidine kinase [Marinomonas sp. MED121] Length = 497 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 219/477 (45%), Positives = 309/477 (64%), Gaps = 7/477 (1%) Query: 46 LPDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMT 105 L SL G++ +++ GV Q+ IW QL + +E R AQ +A AS I YF + Sbjct: 25 LHHSLTGQILIILALGVTAAQLFSSTIWLKQLAADAEQNVREVAQPMAFRVASTISYFSS 84 Query: 106 LPPNYRPLMIQQLREMGGTRFFINANSSAVPVKSIGDSRLANLAIDVAAQTLREDLPFLP 165 LP NYR ++I QL+EMGGTRFF+ N+ + + + +S L N+ I+ TL + L + Sbjct: 85 LPQNYRHIVIDQLQEMGGTRFFVTVNNEEILINELEESPLQNIVIEEFRNTLAKQLG-IT 143 Query: 166 EARLAFAWPDGLPVASDGLTVNDLPDNWVQHILLTKPNSAPVLVIQMQVESGRWIYLAAL 225 ++AF+ PD L V ++ ++DLP+ W H LL KP + P+LVIQ+ + W+YLA L Sbjct: 144 NPKIAFSSPDDLHVINNHTRLSDLPERWGHHSLLVKPLTPPILVIQIPINEKDWLYLATL 203 Query: 226 MPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETVP 285 MP+PYFLD +P+ D+L +S+ +LLL+ L++R T+PLA LA AAE+FG+G+ P Sbjct: 204 MPDPYFLDDSSPISNDKLFSLAISIMTVLLLSFLIIRRVTKPLAKLARAAESFGQGDYQP 263 Query: 286 DLPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELLDDDD 345 + E GS E TA AF+ M+ RI+RYL+DRERLF SISHDL+TPITRL+LR E++D++D Sbjct: 264 -VEEVGSEEIRNTAHAFNAMQTRIQRYLDDRERLFASISHDLKTPITRLRLRAEMVDEED 322 Query: 346 MRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPS 405 R DL++LDM+VKGALQSVK++DIHENR E+ + ++ + A LA ++ + Sbjct: 323 TREAMVRDLEDLDMLVKGALQSVKETDIHENRVEINILKMLKDLQNSAHLAQRDMQLSGE 382 Query: 406 -GINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDA 464 + KPLA+KR + NL DN LYYG +V++ + +LV I I D GPG+P + Sbjct: 383 LNQAYVGKPLAIKRCLTNLIDNGLYYGDRVKVELDND----DELVTIRILDEGPGIPSEK 438 Query: 465 MGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILP 521 M +FQPY RL A + GMGLGL I+RNI +AHGGE+ L N PEGGL A +ILP Sbjct: 439 MEKVFQPYTRLTIKHANHPSGMGLGLSIARNIARAHGGEVHLINRPEGGLEAKLILP 495 >ref|YP_004315087.1| integral membrane sensor signal transduction histidine kinase [Marinomonas mediterranea MMB-1] gb|ADZ93251.1| integral membrane sensor signal transduction histidine kinase [Marinomonas mediterranea MMB-1] Length = 484 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 221/476 (46%), Positives = 309/476 (64%), Gaps = 10/476 (2%) Query: 49 SLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMTLPP 108 SL G++ ++M FGV Q+ IW QL++ +E + + H+A A+ + YF +LP Sbjct: 14 SLTGQILIIMAFGVASAQLVSSAIWLRQLQADTEKNVQEVSTHMAFRIAATVSYFSSLPQ 73 Query: 109 NYRPLMIQQLREMGGTRFFINANSSAVPVKSIGDSRLANLAIDVAAQTLREDLPFLPEAR 168 NYR ++I QL++MGGTRFF+ N + + ++ +S+L + D TL L + A Sbjct: 74 NYRHIVIDQLQDMGGTRFFVTLNKEYITIDALPESKLKRIVKDEIHNTLSRQLG-IHTAD 132 Query: 169 LAFAWPDGLPVASDGLTVNDLPDNWVQHILLTKPNSAPVLVIQMQVESGRWIYLAALMPN 228 ++F+ PD L V ++ ++DLP+ W H L+ KP + P+++IQ+QV W+YLA+LMP Sbjct: 133 ISFSSPDNLRVINNQTKLSDLPERWGHHSLMMKPLTPPIVIIQIQVSESEWLYLASLMPA 192 Query: 229 PYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAFGKGETVPDLP 288 PYFLD + L DRL S+ +LLLT+L +R TTRPLA LA AAE FGKG+ P L Sbjct: 193 PYFLDESSLLTADRLFSLTASVITVLLLTLLFIRRTTRPLALLAHAAEQFGKGDWKP-LK 251 Query: 289 ETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELLDDDDMRT 348 E G+ E KTA AF+ M++RI+RY++DRERLF SISHDL+TPITRL+LR E+LD+D+ R Sbjct: 252 EDGALEVRKTAHAFNDMQKRIQRYVDDRERLFASISHDLKTPITRLRLRAEMLDEDEARD 311 Query: 349 DFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI-AFTPSGI 407 DL++LDM+VKGALQSVK++DIHENR E+ L+ L+ + A + ++ F Sbjct: 312 AMVRDLEDLDMLVKGALQSVKETDIHENRVELDLERLLKDIQSSANIHITKVQVFGQLQH 371 Query: 408 NVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDAMGT 467 + KPLA+KR +GNL DNALYYG EI I + D + I I D GPG+P D + Sbjct: 372 PYVGKPLAIKRCLGNLIDNALYYGNTAEIFIEDTE----DTLCIRICDKGPGIPLDKIDK 427 Query: 468 LFQPYVRL--EHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILP 521 +FQPY RL EH + GMGLGL I+RNI +AHGGE+ L N P+ GL A ++LP Sbjct: 428 VFQPYTRLVPEHS-GHHPTGMGLGLSIARNIARAHGGEVSLSNRPKKGLEAKLLLP 482