BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3927.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777916.1| GntR family transcription regulator protein ... 366 2e-99 ref|YP_004753667.1| regulatory protein GntR [Collimonas fungivor... 280 1e-73 gb|EFV86593.1| gntR-family transcriptional regulator [Achromobac... 237 2e-60 ref|YP_728017.1| GntR family transcriptional regulator [Ralstoni... 236 3e-60 ref|YP_004687314.1| GntR family transcriptional regulator [Cupri... 235 5e-60 >ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66008.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 209/224 (93%), Positives = 216/224 (96%) Query: 40 APAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL 99 APAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL Sbjct: 5 APAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL 64 Query: 100 IPDKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQERQAVKDD 159 IPDKGAFVSKPTVEETRN+FFVRR LE+AMVR+FVA AT DYARLEAHLE ERQAV DD Sbjct: 65 IPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDD 124 Query: 160 NMQVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHGAFI 219 NMQVRS+LLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH AFI Sbjct: 125 NMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFI 184 Query: 220 AAARAGDVEKAVELMEHHLLHVEQALAFEPKSGPRKDLLRELLS 263 AAARAGD E+A+ELMEHHLLHVEQALAFEPK+GPRKDLLRELLS Sbjct: 185 AAARAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 >ref|YP_004753667.1| regulatory protein GntR [Collimonas fungivorans Ter331] gb|AEK62844.1| regulatory protein GntR, HTH:GntR, C-terminal [Collimonas fungivorans Ter331] Length = 231 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 156/216 (72%), Positives = 179/216 (82%), Gaps = 1/216 (0%) Query: 49 IASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGAFVS 108 IA+DI IA QRLPPG KL EEALAR+Y VSRTKIRAALVMLAKDKL+DL+PDKGAFVS Sbjct: 16 IAADITTAIAEQRLPPGTKLREEALARLYSVSRTKIRAALVMLAKDKLIDLVPDKGAFVS 75 Query: 109 KPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQERQAVKDDNMQVRSSLL 168 +PT EE R +FFVRR LE A+VR+FVA AT ADY LE HL+QER+A+ +N QVRS LL Sbjct: 76 RPTEEEARQIFFVRRVLETALVREFVAKATAADYELLEQHLQQEREALSKENPQVRSRLL 135 Query: 169 SDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHGAFIAAARAGDVE 228 SDFHILLAR VGN VLTD+L KLAGRS+LITMLYQSTRDAACSS+EH F+ AA+AGD E Sbjct: 136 SDFHILLARTVGNQVLTDVLTKLAGRSSLITMLYQSTRDAACSSDEHVEFLQAAKAGDTE 195 Query: 229 KAVELMEHHLLHVEQALAFE-PKSGPRKDLLRELLS 263 KAV+LM+HHL HVE AL FE P G +KD ++ LL+ Sbjct: 196 KAVQLMQHHLHHVESALQFEIPPPGGKKDFVKALLA 231 >gb|EFV86593.1| gntR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 249 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 140/233 (60%), Positives = 175/233 (75%), Gaps = 2/233 (0%) Query: 31 PPAMTASVPAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVM 90 P MT +VP P P S+D IA ++AA I A RLPPG +L EEALARVY+VSRTKIRAAL+M Sbjct: 19 PRFMTQAVP-PDP-SADDIAKEVAAAIVAHRLPPGTRLREEALARVYKVSRTKIRAALLM 76 Query: 91 LAKDKLVDLIPDKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLE 150 L+KDKL++++PDKGAFVSKP E R ++ VRR LEAA+ R+FV AT ADY R++AHL Sbjct: 77 LSKDKLINIVPDKGAFVSKPDANEAREVYAVRRILEAALAREFVTRATAADYRRIDAHLA 136 Query: 151 QERQAVKDDNMQVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAAC 210 +ER AV+ ++Q R+ LL DFHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+C Sbjct: 137 EERAAVESGDVQARNRLLGDFHILLAEAVGNSVLTGMLRELSARSAVITVLYQSSHDASC 196 Query: 211 SSEEHGAFIAAARAGDVEKAVELMEHHLLHVEQALAFEPKSGPRKDLLRELLS 263 SS EH AFI AARAGDV++A LM+ HL HV+ AL F DL+ LLS Sbjct: 197 SSREHHAFIEAARAGDVDRACALMDEHLEHVQTALDFSEGDRAGGDLVAALLS 249 >ref|YP_728017.1| GntR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94649.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 230 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 137/224 (61%), Positives = 174/224 (77%), Gaps = 3/224 (1%) Query: 43 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 101 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIAEDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 102 DKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQERQAVKDDNM 161 DKGAFV+KP+ EE R +F VRR LEAA+ R+FVA AT ADY R++ HL ER+A+ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATPADYKRIDRHLAAERKALGGNDA 126 Query: 162 QVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHGAFIAA 221 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EH FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSTRSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 222 ARAGDVEKAVELMEHHLLHVEQALAFEPKS--GPRKDLLRELLS 263 ARAGDVE+AV LM HL HVE AL FE + KDL+ LL+ Sbjct: 187 ARAGDVERAVTLMVDHLGHVEGALHFEETAPVSRGKDLVTALLA 230 >ref|YP_004687314.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI78833.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 230 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 137/224 (61%), Positives = 174/224 (77%), Gaps = 3/224 (1%) Query: 43 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 101 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIAEDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 102 DKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQERQAVKDDNM 161 DKGAFV+KP+ EE R +F VRR LEAA+ R+FVA AT ADY R++ HL ER+A+ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATPADYKRIDKHLAAERKALTGNDA 126 Query: 162 QVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHGAFIAA 221 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EH FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSTRSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 222 ARAGDVEKAVELMEHHLLHVEQALAFEPKS--GPRKDLLRELLS 263 ARAGDVE+AV LM HL HVE AL FE + KDL+ LL+ Sbjct: 187 ARAGDVERAVALMVDHLGHVEGALHFEETAPVSRGKDLVTALLA 230