BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3925.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777915.1| C4-dicarboxylate transport transmembrane pro... 591 e-167 ref|YP_004687313.1| C4-dicarboxylate transport protein DctA [Cup... 479 e-133 ref|YP_297482.1| C4-dicarboxylate transporter DctA [Ralstonia eu... 476 e-132 ref|YP_728016.1| C4-dicarboxylate transporter DctA [Ralstonia eu... 475 e-132 ref|YP_002007026.1| c4-dicarboxylate transporter dcta [Cupriavid... 472 e-131 >ref|YP_003777915.1| C4-dicarboxylate transport transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66007.1| C4-dicarboxylate transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 378/397 (95%), Positives = 385/397 (96%) Query: 1 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVHPGAGMN 60 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVV PGAGMN Sbjct: 47 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVQPGAGMN 106 Query: 61 IDPSNLDASSLSGYMANAGKVKETGFADFIMKLIPATAVSAFTSGDVLQVLLISVTFGCA 120 IDPSNLDASSLSGYMANAGKVKETGFA+FIMKLIPATAVSAFTSGDVLQVLLISVTFGCA Sbjct: 107 IDPSNLDASSLSGYMANAGKVKETGFAEFIMKLIPATAVSAFTSGDVLQVLLISVTFGCA 166 Query: 121 LLLIGDKGAPVVALVSSLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV 180 LLLIG+KGAPVVALV+SLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV Sbjct: 167 LLLIGEKGAPVVALVASLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV 226 Query: 181 LLFYGAAIFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMRKLEHM 240 LLFYGA IFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIM+KLEHM Sbjct: 227 LLFYGAVIFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMKKLEHM 286 Query: 241 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLSWGDLAAILAIALVTSKGA 300 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLS GDLAAILAIALVTSKGA Sbjct: 287 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLSMGDLAAILAIALVTSKGA 346 Query: 301 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWEK 360 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWE+ Sbjct: 347 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWER 406 Query: 361 DIDKQRARAVLNGEYVTPLAEELPVIDLPGVAGNPAR 397 DIDK RARAVLNGE V PL EE PVI+L GV PA+ Sbjct: 407 DIDKVRARAVLNGESVAPLVEENPVIELMGVTVKPAQ 443 >ref|YP_004687313.1| C4-dicarboxylate transport protein DctA [Cupriavidus necator N-1] gb|AEI78832.1| C4-dicarboxylate transport protein DctA [Cupriavidus necator N-1] Length = 486 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 268/373 (71%), Positives = 314/373 (84%) Query: 1 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVHPGAGMN 60 M+I IVFCVVV GICGA +LKKVG VG+KA++YFE+VTTIAL LG++LA V PG GMN Sbjct: 84 MLIGPIVFCVVVAGICGAGELKKVGRVGIKAVVYFEIVTTIALALGILLAYVFQPGVGMN 143 Query: 61 IDPSNLDASSLSGYMANAGKVKETGFADFIMKLIPATAVSAFTSGDVLQVLLISVTFGCA 120 +DP +LDAS+++GY+ NA KVK+ G DF++KLIP T AF +GDVLQVL++S+ FGCA Sbjct: 144 VDPRSLDASAIAGYIDNATKVKDQGTVDFLLKLIPNTVFGAFANGDVLQVLVVSILFGCA 203 Query: 121 LLLIGDKGAPVVALVSSLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV 180 L L+G+ G P+V L+ + S FK M F I+LAPLGVLGA+AFTVGKYGIGSLKQL LV Sbjct: 204 LSLVGEPGRPLVRLIDTFSHTLFKMMGFIIKLAPLGVLGAVAFTVGKYGIGSLKQLGFLV 263 Query: 181 LLFYGAAIFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMRKLEHM 240 LFYGA FVLVVLG I+R G S+ KLIRYLR EL+VVL T SSDSVLPQ+M+KLE M Sbjct: 264 FLFYGAVAIFVLVVLGTIMRVCGFSVIKLIRYLRAELLVVLGTASSDSVLPQVMKKLEFM 323 Query: 241 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLSWGDLAAILAIALVTSKGA 300 GIKKS VGLVIPTGYSFNLDAFSIYLT+AA+FIAQATNT L+ GDL ILA+ALVTSKGA Sbjct: 324 GIKKSVVGLVIPTGYSFNLDAFSIYLTLAAVFIAQATNTPLALGDLLGILAVALVTSKGA 383 Query: 301 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWEK 360 HG+PGSAIVILAATL+ PAIP +GLVLVLS+DWFIGIARALGNL+GNCVATVV+A+WEK Sbjct: 384 HGIPGSAIVILAATLSAHPAIPAIGLVLVLSVDWFIGIARALGNLIGNCVATVVVAAWEK 443 Query: 361 DIDKQRARAVLNG 373 DID++RA VLNG Sbjct: 444 DIDRERAHGVLNG 456 >ref|YP_297482.1| C4-dicarboxylate transporter DctA [Ralstonia eutropha JMP134] gb|AAZ62638.1| Sodium:dicarboxylate symporter [Ralstonia eutropha JMP134] Length = 463 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 281/388 (72%), Positives = 326/388 (84%), Gaps = 1/388 (0%) Query: 1 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVHPGAGMN 60 M+I IVFCVVV GICGA +LKKVG VG+KA++YFE+VTTIAL LG++LA V HPG GMN Sbjct: 61 MLIGPIVFCVVVAGICGAGELKKVGRVGIKAVVYFEIVTTIALALGILLAYVFHPGTGMN 120 Query: 61 IDPSNLDASSLSGYMANAGKVKETGFADFIMKLIPATAVSAFTSGDVLQVLLISVTFGCA 120 +DP +LDAS++SGY+ NA KVK G ADF++KLIP T + AF+SGDVLQVLL+SV FGCA Sbjct: 121 VDPRSLDASAISGYIENATKVKSEGTADFLLKLIPNTIIGAFSSGDVLQVLLVSVLFGCA 180 Query: 121 LLLIGDKGAPVVALVSSLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV 180 L L+G+K P+V+L+ + S FK M F I+LAPLGVLGA+AFTVGKYGIGSLKQL LV Sbjct: 181 LSLVGEKAKPLVSLIDTFSHTLFKMMGFIIKLAPLGVLGAVAFTVGKYGIGSLKQLGFLV 240 Query: 181 LLFYGAAIFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMRKLEHM 240 +LFYGA FVLVVLG I+R G S+ KLIRYLR EL+VVL T SSDSVLPQ+M+KLE M Sbjct: 241 VLFYGAVTIFVLVVLGTIMRLCGFSVIKLIRYLRAELLVVLGTASSDSVLPQVMKKLEFM 300 Query: 241 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLSWGDLAAILAIALVTSKGA 300 GIKKS VGLVIPTGYSFNLDAFSIYLT+AA+FIAQATNT L+ GDL ILA+ALVTSKGA Sbjct: 301 GIKKSVVGLVIPTGYSFNLDAFSIYLTLAAVFIAQATNTPLAMGDLLGILAVALVTSKGA 360 Query: 301 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWEK 360 HG+PGSAIVILAATL+ PAIP +GLVLVLS+DWFIGIARALGNL+GNCVATVV+A+WEK Sbjct: 361 HGIPGSAIVILAATLSAHPAIPAIGLVLVLSVDWFIGIARALGNLIGNCVATVVVAAWEK 420 Query: 361 DIDKQRARAVLNGEY-VTPLAEELPVID 387 DID+ RAR VLNG T L E LP+ D Sbjct: 421 DIDRDRARDVLNGVVPATELDEGLPMAD 448 >ref|YP_728016.1| C4-dicarboxylate transporter DctA [Ralstonia eutropha H16] emb|CAJ94648.1| C4-dicarboxylate transport protein [Ralstonia eutropha H16] Length = 466 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 269/373 (72%), Positives = 315/373 (84%) Query: 1 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVHPGAGMN 60 M+I IVFCVVV GICGA +LKKVG VG+KA++YFE+VTTIAL LG++LA V PG GMN Sbjct: 64 MLIGPIVFCVVVAGICGAGELKKVGRVGIKAVVYFEIVTTIALALGILLAYVFQPGVGMN 123 Query: 61 IDPSNLDASSLSGYMANAGKVKETGFADFIMKLIPATAVSAFTSGDVLQVLLISVTFGCA 120 +DP +LDAS+++G++ NA KVK+ G DF++KLIP T AF +GDVLQVLL+S+ FGCA Sbjct: 124 VDPRSLDASAIAGFIDNATKVKDQGTVDFLLKLIPNTVFGAFANGDVLQVLLVSILFGCA 183 Query: 121 LLLIGDKGAPVVALVSSLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV 180 L L+G+ G P+V L+ + S FK M F I+LAPLGVLGA+AFTVGKYGIGSLKQL LV Sbjct: 184 LSLVGEPGRPLVRLIDTFSHTLFKMMGFIIKLAPLGVLGAVAFTVGKYGIGSLKQLGFLV 243 Query: 181 LLFYGAAIFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMRKLEHM 240 LFYGA I FVLVVLG I+R G S+ KLIRYLR EL+VVL T SSDSVLPQ+M+KLE M Sbjct: 244 FLFYGAVIVFVLVVLGTIMRVCGFSVIKLIRYLRAELLVVLGTASSDSVLPQVMKKLEFM 303 Query: 241 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLSWGDLAAILAIALVTSKGA 300 GIKKS VGLVIPTGYSFNLDAFSIYLT+AA+FIAQATNT L+ GDL ILA+ALVTSKGA Sbjct: 304 GIKKSVVGLVIPTGYSFNLDAFSIYLTLAAVFIAQATNTPLAMGDLLGILAVALVTSKGA 363 Query: 301 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWEK 360 HG+PGSAIVILAATL+ PAIP +GLVLVLS+DWFIGIARALGNL+GNCVATVV+A+WEK Sbjct: 364 HGIPGSAIVILAATLSAHPAIPAIGLVLVLSVDWFIGIARALGNLIGNCVATVVVAAWEK 423 Query: 361 DIDKQRARAVLNG 373 DID++RA VLNG Sbjct: 424 DIDRERAHGVLNG 436 >ref|YP_002007026.1| c4-dicarboxylate transporter dcta [Cupriavidus taiwanensis LMG 19424] emb|CAQ70965.1| citrate and C4-dicarboxylic acids transport protein (DAACS family) [Cupriavidus taiwanensis LMG 19424] Length = 465 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 269/373 (72%), Positives = 316/373 (84%) Query: 1 MIIPVIVFCVVVQGICGASDLKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVHPGAGMN 60 M+I IVFCVVV GICGA +LKKVG VG+KA++YFEVVTTIAL LG+VLA V PG GMN Sbjct: 62 MLIGPIVFCVVVAGICGAGELKKVGRVGIKAVVYFEVVTTIALALGIVLAYVFQPGVGMN 121 Query: 61 IDPSNLDASSLSGYMANAGKVKETGFADFIMKLIPATAVSAFTSGDVLQVLLISVTFGCA 120 +DP +LDAS+++G++ NA KVK+ G DF++KLIP T AF +GDVLQVL++S+ FGCA Sbjct: 122 VDPRSLDASAIAGFIDNATKVKDQGTVDFLLKLIPNTVFGAFANGDVLQVLVVSILFGCA 181 Query: 121 LLLIGDKGAPVVALVSSLSDAFFKCMSFFIRLAPLGVLGAIAFTVGKYGIGSLKQLALLV 180 L L+G+ G P+V+L+ + S FK M F I+LAPLGVLGA+AFTVGKYGIGSLKQL LV Sbjct: 182 LSLVGEPGRPLVSLIDTFSHTLFKMMGFIIKLAPLGVLGAVAFTVGKYGIGSLKQLGFLV 241 Query: 181 LLFYGAAIFFVLVVLGGILRASGLSIFKLIRYLREELVVVLATTSSDSVLPQIMRKLEHM 240 LLFYGA FVLVVLGGI+RA G S+ KLIRYLR EL+VVL T SSDSVLPQ+M+KLE M Sbjct: 242 LLFYGAVSVFVLVVLGGIMRACGFSVIKLIRYLRAELLVVLGTASSDSVLPQVMKKLEFM 301 Query: 241 GIKKSTVGLVIPTGYSFNLDAFSIYLTMAALFIAQATNTHLSWGDLAAILAIALVTSKGA 300 G+KKS VGLVIPTGYSFNLDAFSIYLT+AA+FIAQATNT L+ DL ILA+AL+TSKGA Sbjct: 302 GVKKSVVGLVIPTGYSFNLDAFSIYLTLAAVFIAQATNTPLAMADLLGILAVALITSKGA 361 Query: 301 HGVPGSAIVILAATLTTIPAIPVVGLVLVLSIDWFIGIARALGNLLGNCVATVVIASWEK 360 HG+PGSAIVILAATL+ PAIP +GLVLVLS+DWFIGIARALGNL+GNCVATVV+A+WEK Sbjct: 362 HGIPGSAIVILAATLSAHPAIPAIGLVLVLSVDWFIGIARALGNLIGNCVATVVVAAWEK 421 Query: 361 DIDKQRARAVLNG 373 DID+ RA VLNG Sbjct: 422 DIDRARAHGVLNG 434