BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3923.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthin... 371 e-100 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 267 2e-69 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 257 3e-66 ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 240 3e-61 ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herba... 231 2e-58 >ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89954.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 223/355 (62%), Positives = 277/355 (78%) Query: 10 IADMKIGARLALGFGAVMVLLLAIAVLGNLQLGRLADGIGLIVKDRYPKTVMANTVQIQV 69 IA+MKI +L L FG V LL+ I +L N+QLG+L + I LI KDRYPKT++AN+VQI+V Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 70 NKIALDIRDILLTDDPQRIKALVADATAADRKMNESLARLKEVARSEEDKRYVEAAMTAR 129 NKIAL++RDI+L+ DP +IK LV+D A+D+KMNE L +L+ VA++EED RYV AA+ AR Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVAR 123 Query: 130 QAYVPARDKLLALAVAGQVDEAKQYLPQQFMPVQIKYFIALDAMFDYQGGLMDAAGEAAT 189 YVPARD LL LA G+ EAK YL Q FMPVQ+KYFIALDAMFDYQG LM+ AG+AA+ Sbjct: 124 DQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAAS 183 Query: 190 QDSASARNIINGLALAALLLAAGVAWLVSRSIARPLVNAVDVARRVAQGDLSARVEVSSR 249 S AR IIN LA +LLL+ V W V+RSI RPL AV VARRVAQGDLS V V + Sbjct: 184 ATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKTT 243 Query: 250 DETGELMMALKLMNDNLRNIVSRVRLGTDTIHHAAEEIASGNLDLSARTEQQAGSIEETA 309 +E G+LM ALK MNDNL +IV++VR GT TI +A+ EIA GN+DLS+RTEQQA S+EETA Sbjct: 244 NEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEETA 303 Query: 310 AAMEELTSTVRQNADNARQATELAGNASHIAVQGGEVVEQVVRTMADINASSRQI 364 +AMEELTSTVR+NADNA+QA +LA +A+ +A QGG VV +V+ TMA IN SS++I Sbjct: 304 SAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKI 358 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 161/356 (45%), Positives = 240/356 (67%) Query: 10 IADMKIGARLALGFGAVMVLLLAIAVLGNLQLGRLADGIGLIVKDRYPKTVMANTVQIQV 69 + ++KIG RL+L FG++++LL+ +A L ++G L D I + DRYPKTV+AN ++ + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 70 NKIALDIRDILLTDDPQRIKALVADATAADRKMNESLARLKEVARSEEDKRYVEAAMTAR 129 N+IA ++R+ LL + I+A + A +N +L L++ RSE ++ + R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 130 QAYVPARDKLLALAVAGQVDEAKQYLPQQFMPVQIKYFIALDAMFDYQGGLMDAAGEAAT 189 ++P +D + LA AG DEA L + P Q+ Y ++D + DYQ LM +G A Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 190 QDSASARNIINGLALAALLLAAGVAWLVSRSIARPLVNAVDVARRVAQGDLSARVEVSSR 249 ++ + +I ++ A+L+AA A L +RSI RPL AV +AR+VA GDL+ + V S+ Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 250 DETGELMMALKLMNDNLRNIVSRVRLGTDTIHHAAEEIASGNLDLSARTEQQAGSIEETA 309 DETG+L+ ALK MN+ L IV++VRLGTDTI A+ +IA+GNLDLS+RTEQQA S+EETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 310 AAMEELTSTVRQNADNARQATELAGNASHIAVQGGEVVEQVVRTMADINASSRQIV 365 ++MEELTSTV+QNA+NARQ+ +LA +AS +AV+GG VV +VV TM +IN S+++IV Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIV 356 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 161/356 (45%), Positives = 245/356 (68%) Query: 10 IADMKIGARLALGFGAVMVLLLAIAVLGNLQLGRLADGIGLIVKDRYPKTVMANTVQIQV 69 + ++KIG RLAL FG+V+ +L+ +AV+ +L +L IG++ DRYPKTV A+ ++ + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 70 NKIALDIRDILLTDDPQRIKALVADATAADRKMNESLARLKEVARSEEDKRYVEAAMTAR 129 N+ A ++R+ LL D +IK + + E+L +L +SE+ + Y++A AR Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 130 QAYVPARDKLLALAVAGQVDEAKQYLPQQFMPVQIKYFIALDAMFDYQGGLMDAAGEAAT 189 + P +DK +AL G EA+ L + P Q++Y + LD + ++Q LM AGE A Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 190 QDSASARNIINGLALAALLLAAGVAWLVSRSIARPLVNAVDVARRVAQGDLSARVEVSSR 249 + SA+A+ ++ L++ A++++A + +L +RSI RPL AV +AR+VA GDL+ + V+S+ Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 250 DETGELMMALKLMNDNLRNIVSRVRLGTDTIHHAAEEIASGNLDLSARTEQQAGSIEETA 309 DETG+L+ AL+ MN+ L IV++VR+GTDTI A+ +IA+GNLDLS+RTE+QA S+EETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 310 AAMEELTSTVRQNADNARQATELAGNASHIAVQGGEVVEQVVRTMADINASSRQIV 365 ++MEELTSTV+QNADNARQ+ +LA AS +AV+GG VV QVV TM IN S+ +IV Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIV 356 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 231/358 (64%) Query: 8 MRIADMKIGARLALGFGAVMVLLLAIAVLGNLQLGRLADGIGLIVKDRYPKTVMANTVQI 67 M+I+DMKI RL F A++V++ IA +G L ++D IV DRY K + + Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 68 QVNKIALDIRDILLTDDPQRIKALVADATAADRKMNESLARLKEVARSEEDKRYVEAAMT 127 +VN A +R+ ++ +P+ K + +++E LA +++ + + A Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 128 ARQAYVPARDKLLALAVAGQVDEAKQYLPQQFMPVQIKYFIALDAMFDYQGGLMDAAGEA 187 AR Y R K++ L + DEA +L + +PVQ KYF A+ M +Q LMD + E Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 188 ATQDSASARNIINGLALAALLLAAGVAWLVSRSIARPLVNAVDVARRVAQGDLSARVEVS 247 A+ S+SA NI+ L+ A+LL+A A L++RSI RPL AV VA VA GDL+ ++E + Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 248 SRDETGELMMALKLMNDNLRNIVSRVRLGTDTIHHAAEEIASGNLDLSARTEQQAGSIEE 307 S+DETG L+ ALK MNDNL IV+ VR GTDTI+ A+ EIA+GNLDLS+RTEQQAG++EE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 308 TAAAMEELTSTVRQNADNARQATELAGNASHIAVQGGEVVEQVVRTMADINASSRQIV 365 TA+AMEELTSTVRQNADNARQA LA AS +A+QGG VV +VV+TM IN +SR+IV Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIV 359 >ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ61560.1| methyl-accepting chemotaxis protein I protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 165/358 (46%), Positives = 234/358 (65%) Query: 8 MRIADMKIGARLALGFGAVMVLLLAIAVLGNLQLGRLADGIGLIVKDRYPKTVMANTVQI 67 M+++++ I RL LGFG +MVL+LA+A G +LG+L + ++ D+YPKTV+A + Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 68 QVNKIALDIRDILLTDDPQRIKALVADATAADRKMNESLARLKEVARSEEDKRYVEAAMT 127 Q+N IA +R+ILL +IK+ + ADR + E LA+L ++ + + + +T Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 128 ARQAYVPARDKLLALAVAGQVDEAKQYLPQQFMPVQIKYFIALDAMFDYQGGLMDAAGEA 187 A+ AY RDK+LA+ G + A L + PVQ A DA+ Q +M AG+ Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 188 ATQDSASARNIINGLALAALLLAAGVAWLVSRSIARPLVNAVDVARRVAQGDLSARVEVS 247 + A AR ++ LA A L AA +AW+++RSI PL AV VA VA GDL++ ++ Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 248 SRDETGELMMALKLMNDNLRNIVSRVRLGTDTIHHAAEEIASGNLDLSARTEQQAGSIEE 307 RDET L+ ALK MND L +IVS+VR+ TDTI A+ EIA GNLDLS+RTE+QA S+EE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 308 TAAAMEELTSTVRQNADNARQATELAGNASHIAVQGGEVVEQVVRTMADINASSRQIV 365 TA++ME+LT+TV+QNA +A QA++LAG+AS IA QGGEVV VV TM I+ASS++IV Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIV 358