BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3919.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776646.1| transcription regulator protein [Herbaspiril... 573 e-161 ref|YP_001352203.1| LysR family transcriptional regulator [Janth... 567 e-159 ref|YP_004754102.1| LysR family transcriptional regulator [Colli... 537 e-150 ref|ZP_08273818.1| transcriptional regulator, LysR family [Oxalo... 464 e-129 ref|YP_001857521.1| LysR family transcriptional regulator [Burkh... 280 3e-73 >ref|YP_003776646.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64738.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 292/309 (94%), Positives = 300/309 (97%) Query: 55 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 114 MSRLPDHLD+HLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDLHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 115 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIAR 174 GMVPTQHGESLLKPAKRILDETERLF+PKT FVPQEEER FHIAAPDYMNTPFFTEVIAR Sbjct: 61 GMVPTQHGESLLKPAKRILDETERLFIPKTEFVPQEEERIFHIAAPDYMNTPFFTEVIAR 120 Query: 175 LRRESPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRA 234 LRRESPRSRIVIHALGPDTDYVR LSDGELDLVIANWD PPAHLHLSKLFDDPIVCLMRA Sbjct: 121 LRRESPRSRIVIHALGPDTDYVRRLSDGELDLVIANWDAPPAHLHLSKLFDDPIVCLMRA 180 Query: 235 DCAYAKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 294 DCAYA+RTAR+AMS+EDYLSLPHAAPSQILPGYHG+ID+FLEKQNL RNVVVESAHFRML Sbjct: 181 DCAYARRTAREAMSVEDYLSLPHAAPSQILPGYHGSIDSFLEKQNLRRNVVVESAHFRML 240 Query: 295 PYMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 354 PYMVAQTDLVLTAGQQFASFYEKLL LKSY VPIKFPPLRFYQLWHER HQATEHKWLRA Sbjct: 241 PYMVAQTDLVLTAGQQFASFYEKLLSLKSYAVPIKFPPLRFYQLWHERSHQATEHKWLRA 300 Query: 355 QVSAAAKML 363 QV AAAK+L Sbjct: 301 QVGAAAKLL 309 >ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR91274.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 311 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 283/309 (91%), Positives = 295/309 (95%) Query: 55 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 114 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLN+PQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 115 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIAR 174 GMVPTQHGESL+K AKRILDE E LF+PKTAFVPQ+E RTFHIAAPDYMNT FFTEVIAR Sbjct: 61 GMVPTQHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIAR 120 Query: 175 LRRESPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRA 234 LRRESP+S IVIHALGPDTDYVRLLSDGELDLVIANWDE P HLH+SKLFDDPIVCLMR+ Sbjct: 121 LRRESPKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRS 180 Query: 235 DCAYAKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 294 DCAYAKRTA+DAM+IEDYLSLPHAAPSQILPGYHGTIDTFLEKQNL RN+VVESAHFRML Sbjct: 181 DCAYAKRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRML 240 Query: 295 PYMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 354 PYMV +TDLVLTAGQQF SFYEK L LKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA Sbjct: 241 PYMVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 Query: 355 QVSAAAKML 363 QV AAAK+L Sbjct: 301 QVCAAAKVL 309 >ref|YP_004754102.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63279.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 312 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 268/310 (86%), Positives = 289/310 (93%) Query: 55 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 114 M++LPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MAKLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 115 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIAR 174 GMVPTQHGESLLKPAKRIL+ETERLFV KTAFVPQ E RTFHIAAPDYMNTPFF EV+AR Sbjct: 61 GMVPTQHGESLLKPAKRILEETERLFVQKTAFVPQAEARTFHIAAPDYMNTPFFLEVVAR 120 Query: 175 LRRESPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRA 234 LRRESP+SRIVIHALGP+TDYVRLLSDG+LDLVIANWDEPP HLHLSKLFDDPIVCLMRA Sbjct: 121 LRRESPKSRIVIHALGPETDYVRLLSDGDLDLVIANWDEPPPHLHLSKLFDDPIVCLMRA 180 Query: 235 DCAYAKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 294 D AYAKRTA D M++EDYLSLPH AP Q+LPGYHG ID+FL+ QNL+RNVVVESA+F ML Sbjct: 181 DSAYAKRTAPDQMTVEDYLSLPHVAPWQVLPGYHGIIDSFLDSQNLNRNVVVESAYFGML 240 Query: 295 PYMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 354 PYMVAQTDLVLT G+QFA FYEK L LKS+T+PIKFPP+RFYQLWHERVHQATEHKWLR Sbjct: 241 PYMVAQTDLVLTTGRQFALFYEKTLALKSFTLPIKFPPMRFYQLWHERVHQATEHKWLRE 300 Query: 355 QVSAAAKMLV 364 Q+ AAK ++ Sbjct: 301 QIGIAAKAML 310 >ref|ZP_08273818.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32710.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 315 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 226/306 (73%), Positives = 261/306 (85%) Query: 58 LPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV 117 LPDHLDIHLIRILY+LL EK+VSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV Sbjct: 9 LPDHLDIHLIRILYMLLSEKSVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV 68 Query: 118 PTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIARLRR 177 PTQHGESLLKPAKRIL ETERLFV K FV Q+E RTFHIAAPDY+ + F V++ LRR Sbjct: 69 PTQHGESLLKPAKRILVETERLFVRKVPFVAQDEGRTFHIAAPDYLASQFLPNVVSSLRR 128 Query: 178 ESPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRADCA 237 ESP+S++VIH LGP+ DY+RLLSDG+LDLVIANW EPPAHLHLSKLF+D I C M ++CA Sbjct: 129 ESPKSKLVIHGLGPEIDYIRLLSDGDLDLVIANWGEPPAHLHLSKLFEDTIACFMHSECA 188 Query: 238 YAKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRMLPYM 297 YAKRT D M++EDYLSLPH AP+Q L GY+G I+ +L KQN+ RNV V+SA F ++PYM Sbjct: 189 YAKRTGPDDMTVEDYLSLPHVAPAQTLAGYNGVIEGYLAKQNMKRNVTVQSAFFGLIPYM 248 Query: 298 VAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRAQVS 357 + QTDLVLT G+QF FYEK L LK +TVP+KFP +R+YQLWH+RVHQ+ EHKWLR +S Sbjct: 249 LTQTDLVLTTGEQFLRFYEKTLPLKRFTVPVKFPKMRYYQLWHDRVHQSNEHKWLRDLIS 308 Query: 358 AAAKML 363 AAAK L Sbjct: 309 AAAKSL 314 >ref|YP_001857521.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC70475.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 309 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 141/311 (45%), Positives = 203/311 (65%), Gaps = 3/311 (0%) Query: 55 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 114 MS+ + +D +L+R+L+ LL E++V+R A+KLNQ QP+ISA+LR+LR++TGDPLLVRG Sbjct: 1 MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKS 60 Query: 115 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIAR 174 GMVPT++G LL+P + L E ER+ + F P R + I PDY+N F V+ R Sbjct: 61 GMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVER 120 Query: 175 LRRESPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRA 234 R+ +P + + H+LGP DY L DG+LD+V+ NW EPP LHLS LF D IVCLM Sbjct: 121 FRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDQIVCLMSN 180 Query: 235 DCAYAKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 294 +AK R ++++ YL+ PH AP+ G G ID L ++ L R+VVV +F + Sbjct: 181 THPFAK---RGGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLA 237 Query: 295 PYMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 354 PY++ ++DL+ T + FA +Y K L L P+ FPP+++YQLWHERVH + E +WLR+ Sbjct: 238 PYVLIKSDLIFTTTRLFADYYAKFLPLTVVPAPLDFPPMQYYQLWHERVHYSDEVRWLRS 297 Query: 355 QVSAAAKMLVN 365 V+ A K L++ Sbjct: 298 LVAEATKTLID 308