BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3917.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754100.1| histidine ammonia-lyase [Collimonas fungivor... 662 0.0 ref|YP_004753670.1| histidine ammonia-lyase [Collimonas fungivor... 661 0.0 ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum sero... 661 0.0 ref|YP_001352205.1| histidine ammonia-lyase [Janthinobacterium s... 658 0.0 gb|EGP43926.1| histidine ammonia-lyase [Achromobacter xylosoxida... 385 e-105 >ref|YP_004754100.1| histidine ammonia-lyase [Collimonas fungivorans Ter331] gb|AEK63277.1| Histidine ammonia-lyase [Collimonas fungivorans Ter331] Length = 542 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 331/370 (89%), Positives = 352/370 (95%), Gaps = 1/370 (0%) Query: 28 QPITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFNT 87 Q ITIDGFNLTA QVV VARAPHL VALAD+SRAALK+SRDYIE+TWMHDEAPMMYSFNT Sbjct: 3 QTITIDGFNLTAQQVVDVARAPHLPVALADTSRAALKESRDYIEATWMHDEAPMMYSFNT 62 Query: 88 GVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEPFSEEVSRATMLLRANAFASNYSAPRVE 147 GVGLLKDTRIKVEHIELFQTQLI+AH AGIGEPFSEEVSRATMLLRANAFASNYSAPRVE Sbjct: 63 GVGLLKDTRIKVEHIELFQTQLIKAHCAGIGEPFSEEVSRATMLLRANAFASNYSAPRVE 122 Query: 148 VVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIVGFDEAEVMYQGKRMSAPEAI 207 VVDRLLAF+NAGIHPIMPQKGSVGASGDLAPL+YLAAAI GFDEAEVMYQG+RM APEAI Sbjct: 123 VVDRLLAFLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMRAPEAI 182 Query: 208 TKAGIGPVKFDLKAKDASALINGCTVSLAVAVLAAHDSRNLLTDACLSLGLTLEAMRAEM 267 TK+G+GPVKFDLKAKDASALINGCT SLAVAVL AHD+RNLL+DACLSLGLTLEAMRAEM Sbjct: 183 TKSGVGPVKFDLKAKDASALINGCTASLAVAVLVAHDARNLLSDACLSLGLTLEAMRAEM 242 Query: 268 SAFDPRIQQARPHAGQIKTAAVIRTLLKGSTRTTHEARSVQLPDESRRTDIPYSSRIQDV 327 +AFD RIQQARPHAGQIKTAA+IR LL GSTRTTHEAR+VQ P+E RRTDIPY++RIQDV Sbjct: 243 AAFDHRIQQARPHAGQIKTAAIIRKLLSGSTRTTHEARAVQFPEELRRTDIPYTARIQDV 302 Query: 328 YSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFNKEDGEGFEIISGGNFHGQYLA 387 YSLRC+PQVYGPVFDALDYID I++KE NSATDNPLIF+KE G GFEIISGGNFHGQYLA Sbjct: 303 YSLRCSPQVYGPVFDALDYIDNIVDKEINSATDNPLIFDKEGG-GFEIISGGNFHGQYLA 361 Query: 388 QAMDLLAMAI 397 QAMDLLAMAI Sbjct: 362 QAMDLLAMAI 371 >ref|YP_004753670.1| histidine ammonia-lyase [Collimonas fungivorans Ter331] gb|AEK62847.1| Histidine ammonia-lyase [Collimonas fungivorans Ter331] Length = 547 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 330/368 (89%), Positives = 351/368 (95%), Gaps = 1/368 (0%) Query: 30 ITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFNTGV 89 ITIDGFNLTA QVV VARAPHL VALAD+SRAALK+SRDYIE+TWMHDEAPMMYSFNTGV Sbjct: 10 ITIDGFNLTAQQVVEVARAPHLPVALADTSRAALKESRDYIEATWMHDEAPMMYSFNTGV 69 Query: 90 GLLKDTRIKVEHIELFQTQLIRAHSAGIGEPFSEEVSRATMLLRANAFASNYSAPRVEVV 149 GLLKDTRIKVEHIELFQTQLI+AH AGIGEPFSEEVSRATMLLRANAFASNYSAPRVEVV Sbjct: 70 GLLKDTRIKVEHIELFQTQLIKAHCAGIGEPFSEEVSRATMLLRANAFASNYSAPRVEVV 129 Query: 150 DRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIVGFDEAEVMYQGKRMSAPEAITK 209 DRLLAF+NAGIHPIMPQKGSVGASGDLAPL+YLAAAI GFDEAEVMYQG+RM APEAITK Sbjct: 130 DRLLAFLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMRAPEAITK 189 Query: 210 AGIGPVKFDLKAKDASALINGCTVSLAVAVLAAHDSRNLLTDACLSLGLTLEAMRAEMSA 269 +G+GPVKFDLKAKDASALINGCT SLAVAVL AHD+RNLL+DACLSLGLTLEAMRAEM+A Sbjct: 190 SGVGPVKFDLKAKDASALINGCTASLAVAVLVAHDARNLLSDACLSLGLTLEAMRAEMAA 249 Query: 270 FDPRIQQARPHAGQIKTAAVIRTLLKGSTRTTHEARSVQLPDESRRTDIPYSSRIQDVYS 329 FD RIQQARPHAGQIKTAA+IR LL GSTRTTHEAR+VQ P+E RRTDIPY++RIQDVYS Sbjct: 250 FDHRIQQARPHAGQIKTAAIIRKLLSGSTRTTHEARAVQFPEELRRTDIPYTARIQDVYS 309 Query: 330 LRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFNKEDGEGFEIISGGNFHGQYLAQA 389 LRC+PQVYGPVFDALDYID I++KE NSATDNPLIF+KE G GFEIISGGNFHGQYLAQA Sbjct: 310 LRCSPQVYGPVFDALDYIDNIVDKEINSATDNPLIFDKEGG-GFEIISGGNFHGQYLAQA 368 Query: 390 MDLLAMAI 397 MDLLAMAI Sbjct: 369 MDLLAMAI 376 >ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1] gb|ADJ66005.1| histidine ammonia-lyase protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 348/371 (93%), Positives = 359/371 (96%) Query: 27 MQPITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN 86 M ITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN Sbjct: 1 MSTITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN 60 Query: 87 TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEPFSEEVSRATMLLRANAFASNYSAPRV 146 TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGE FSEEVSRATMLLRANAFASNYSAPRV Sbjct: 61 TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRV 120 Query: 147 EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIVGFDEAEVMYQGKRMSAPEA 206 EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAI GFDEAEVMYQG+RM A EA Sbjct: 121 EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIAGFDEAEVMYQGQRMRATEA 180 Query: 207 ITKAGIGPVKFDLKAKDASALINGCTVSLAVAVLAAHDSRNLLTDACLSLGLTLEAMRAE 266 I +AGIGPVKFDLKAKDASALINGCT SLAVA+LAAHD+R+LLTDACLSLGLTLEAMRAE Sbjct: 181 IEQAGIGPVKFDLKAKDASALINGCTASLAVAILAAHDARHLLTDACLSLGLTLEAMRAE 240 Query: 267 MSAFDPRIQQARPHAGQIKTAAVIRTLLKGSTRTTHEARSVQLPDESRRTDIPYSSRIQD 326 MSAFDPRIQQARPHAGQIKTA VIRTLL+GSTRTTH AR+VQLPDE RRTDI Y++RIQD Sbjct: 241 MSAFDPRIQQARPHAGQIKTAEVIRTLLQGSTRTTHAARAVQLPDELRRTDIAYTARIQD 300 Query: 327 VYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFNKEDGEGFEIISGGNFHGQYL 386 VYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIF+KE+GEGFEIISGGNFHGQYL Sbjct: 301 VYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFHKEEGEGFEIISGGNFHGQYL 360 Query: 387 AQAMDLLAMAI 397 AQAMDLLAMAI Sbjct: 361 AQAMDLLAMAI 371 >ref|YP_001352205.1| histidine ammonia-lyase [Janthinobacterium sp. Marseille] gb|ABR88411.1| histidine ammonia-lyase [Janthinobacterium sp. Marseille] Length = 541 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 330/371 (88%), Positives = 352/371 (94%), Gaps = 1/371 (0%) Query: 27 MQPITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN 86 M+ ITIDGF LTA QV++VARAPHL V LADSSRAALK+SRDYIE+TWMHDEAPMMYSFN Sbjct: 1 MKNITIDGFTLTAQQVLAVARAPHLPVVLADSSRAALKESRDYIEATWMHDEAPMMYSFN 60 Query: 87 TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEPFSEEVSRATMLLRANAFASNYSAPRV 146 TGVGLLKDTRIKVEHIELFQTQ+I+AH AG+GEPFSEEVSRATMLLRANAFASNYSAPRV Sbjct: 61 TGVGLLKDTRIKVEHIELFQTQMIKAHCAGMGEPFSEEVSRATMLLRANAFASNYSAPRV 120 Query: 147 EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIVGFDEAEVMYQGKRMSAPEA 206 EVVDRLLAF+NAGIHPIMPQKGSVGASGDLAPL+YLAAAI GFDEAEVMYQG+RMSAP+A Sbjct: 121 EVVDRLLAFLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMSAPQA 180 Query: 207 ITKAGIGPVKFDLKAKDASALINGCTVSLAVAVLAAHDSRNLLTDACLSLGLTLEAMRAE 266 ITKAGIG VKFDLKAKDASALINGCT SLAVAVL AHD+RNLLTDACLSLGLTLEAMRAE Sbjct: 181 ITKAGIGAVKFDLKAKDASALINGCTASLAVAVLVAHDARNLLTDACLSLGLTLEAMRAE 240 Query: 267 MSAFDPRIQQARPHAGQIKTAAVIRTLLKGSTRTTHEARSVQLPDESRRTDIPYSSRIQD 326 M+AFD RIQQARPHAGQIKTAAVIR LL GSTRTTHEAR+VQ P+E RRTDIPYS+RIQD Sbjct: 241 MAAFDDRIQQARPHAGQIKTAAVIRKLLSGSTRTTHEARAVQFPEELRRTDIPYSARIQD 300 Query: 327 VYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFNKEDGEGFEIISGGNFHGQYL 386 VYSLRC+PQVYGPVFDALDYID I++KE NSATDNPLIF+K+ G GFEIISGGNFHGQYL Sbjct: 301 VYSLRCSPQVYGPVFDALDYIDNIVDKEINSATDNPLIFDKQGG-GFEIISGGNFHGQYL 359 Query: 387 AQAMDLLAMAI 397 AQAMDLLAMAI Sbjct: 360 AQAMDLLAMAI 370 >gb|EGP43926.1| histidine ammonia-lyase [Achromobacter xylosoxidans AXX-A] Length = 554 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 213/377 (56%), Positives = 270/377 (71%), Gaps = 12/377 (3%) Query: 30 ITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFNTGV 89 IT+DG +L A VV++AR VALAD++R AL +R YIES W++D AP+MY+FNTGV Sbjct: 6 ITLDGAHLRAEDVVAIARG-GATVALADAARQALDATRGYIESHWLNDAAPLMYAFNTGV 64 Query: 90 GLLKDTRIKVEHIELFQTQLIRAHSAGIGEPFSEEVSRATMLLRANAFASNYSAPRVEVV 149 G LK RI I FQ L+R+HSAG GEP +EV RA M LR NAFASN+S RV ++ Sbjct: 65 GALKSQRIAPAEISTFQASLVRSHSAGTGEPMPDEVVRAMMALRVNAFASNHSGVRVAII 124 Query: 150 DRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIVGFDEAEVMYQGKRMSAPEAITK 209 DRL+A +N GI P++P KGSVGASGDLAPLA ++ A++G E+ V Y+G+ M A A + Sbjct: 125 DRLIAMLNHGITPVVPSKGSVGASGDLAPLALMSGALMGLPESRVTYRGEVMPAARAFEQ 184 Query: 210 AGIGPVKFDLKAKDASALINGCTVSLAVAVLAAHDSRNLLTDACLSLGLTLEAMRAEMSA 269 AG+ P D++AKDA+ALING T SLA AVLAAHD+R LL A LS+ +TLEA+R E+S Sbjct: 185 AGMAPT-MDVQAKDATALINGATASLAYAVLAAHDARELLGSATLSMAMTLEALRGELSC 243 Query: 270 FDPRIQQARPHAGQIKTAAVIRTLLKGSTRTTHEARSVQL-------PDESRRTDI-PYS 321 F+ R+ ARPH GQ + AA IR L+ GS R T AR ++L P ++ P + Sbjct: 244 FEDRVMLARPHRGQRRVAAAIRQLVAGSQRCTEPARQLRLRGTPGLDPAQAGTPHTPPLA 303 Query: 322 SRIQDVYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFNKEDGEGFEIISGGNF 381 RIQDVYSLRC PQVYGPV DALDY+D I+ E NSATDNPLIF ++ G+ I+SGG+F Sbjct: 304 PRIQDVYSLRCVPQVYGPVLDALDYVDGILATEMNSATDNPLIFPED--AGYAIVSGGHF 361 Query: 382 HGQYLAQAMDLLAMAIA 398 HGQY+AQAMDLLA+A+A Sbjct: 362 HGQYIAQAMDLLALAVA 378