BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3916.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum sero...   275   1e-72
ref|XP_002540342.1| conserved hypothetical protein [Ricinus comm...   267   4e-70
ref|YP_004753670.1| histidine ammonia-lyase [Collimonas fungivor...   255   2e-66
ref|YP_004754100.1| histidine ammonia-lyase [Collimonas fungivor...   255   2e-66
ref|YP_001352205.1| histidine ammonia-lyase [Janthinobacterium s...   253   1e-65

>ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1]
 gb|ADJ66005.1| histidine ammonia-lyase protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  275 bits (704), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 133/144 (92%), Positives = 136/144 (94%)

Query: 1   MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAASV 60
           MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKA +V
Sbjct: 399 MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAMTV 458

Query: 61  VANTQYIVGVEMLLAAQGLTMTEELLKDFVLGEGTQVAYDEIRRQIPACLDGDRWFHDDV 120
           V NTQYIVGVEMLLAAQ LTMTE LLKDFVLG+GTQ AY EIRRQIPACLDGDRWFHDDV
Sbjct: 459 VQNTQYIVGVEMLLAAQALTMTEALLKDFVLGQGTQAAYAEIRRQIPACLDGDRWFHDDV 518

Query: 121 QAAHGFVVSGSVREAVIAAIGTFV 144
           QAAHGFVVSGSVR AV+AAIG FV
Sbjct: 519 QAAHGFVVSGSVRNAVLAAIGEFV 542


>ref|XP_002540342.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF22041.1| conserved hypothetical protein [Ricinus communis]
          Length = 144

 Score =  267 bits (682), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 133/144 (92%), Positives = 136/144 (94%)

Query: 1   MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAASV 60
           MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKA +V
Sbjct: 1   MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAMTV 60

Query: 61  VANTQYIVGVEMLLAAQGLTMTEELLKDFVLGEGTQVAYDEIRRQIPACLDGDRWFHDDV 120
           V NTQYIVGVEMLLAAQ LTMTE LLKDFVLG+GTQ AY EIRRQIPACLDGDRWFHDDV
Sbjct: 61  VQNTQYIVGVEMLLAAQALTMTEALLKDFVLGQGTQAAYAEIRRQIPACLDGDRWFHDDV 120

Query: 121 QAAHGFVVSGSVREAVIAAIGTFV 144
           QAAHGFVVSGSVR AV+AAIG FV
Sbjct: 121 QAAHGFVVSGSVRNAVLAAIGEFV 144


>ref|YP_004753670.1| histidine ammonia-lyase [Collimonas fungivorans Ter331]
 gb|AEK62847.1| Histidine ammonia-lyase [Collimonas fungivorans Ter331]
          Length = 547

 Score =  255 bits (652), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/143 (83%), Positives = 130/143 (90%)

Query: 1   MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAASV 60
           MSGVRGVNTGYPVVQCS+SSLVMENRTLCMPGSVDSIP+KGNSEDH+SNSTWCARKAA+V
Sbjct: 404 MSGVRGVNTGYPVVQCSLSSLVMENRTLCMPGSVDSIPAKGNSEDHVSNSTWCARKAATV 463

Query: 61  VANTQYIVGVEMLLAAQGLTMTEELLKDFVLGEGTQVAYDEIRRQIPACLDGDRWFHDDV 120
           VANTQYI+GVEMLLAAQ LTMTE+LL  FVLG+GTQ AY EIRRQIPACL+GDRWFH+D+
Sbjct: 464 VANTQYIIGVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDI 523

Query: 121 QAAHGFVVSGSVREAVIAAIGTF 143
             A  FVVSGSVR AV+  IG F
Sbjct: 524 AVAQSFVVSGSVRNAVVEKIGEF 546


>ref|YP_004754100.1| histidine ammonia-lyase [Collimonas fungivorans Ter331]
 gb|AEK63277.1| Histidine ammonia-lyase [Collimonas fungivorans Ter331]
          Length = 542

 Score =  255 bits (651), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/143 (83%), Positives = 130/143 (90%)

Query: 1   MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAASV 60
           MSGVRGVNTGYPVVQCS+SSLVMENRTLCMPGSVDSIP+KGNSEDH+SNSTWCARKAA+V
Sbjct: 399 MSGVRGVNTGYPVVQCSLSSLVMENRTLCMPGSVDSIPAKGNSEDHVSNSTWCARKAATV 458

Query: 61  VANTQYIVGVEMLLAAQGLTMTEELLKDFVLGEGTQVAYDEIRRQIPACLDGDRWFHDDV 120
           VANTQYI+GVEMLLAAQ LTMTE+LL  FVLG+GTQ AY EIRRQIPACL+GDRWFH+D+
Sbjct: 459 VANTQYIIGVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDI 518

Query: 121 QAAHGFVVSGSVREAVIAAIGTF 143
             A  FVVSGSVR AV+  IG F
Sbjct: 519 AVAQSFVVSGSVRHAVVEKIGEF 541


>ref|YP_001352205.1| histidine ammonia-lyase [Janthinobacterium sp. Marseille]
 gb|ABR88411.1| histidine ammonia-lyase [Janthinobacterium sp. Marseille]
          Length = 541

 Score =  253 bits (645), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 119/144 (82%), Positives = 130/144 (90%)

Query: 1   MSGVRGVNTGYPVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAASV 60
           M+GVRGVNTGYPVVQCS+SSLVMENRTLCMPGSVDSIP+KGNSEDH+SNSTWCARKAA+V
Sbjct: 398 MTGVRGVNTGYPVVQCSLSSLVMENRTLCMPGSVDSIPAKGNSEDHVSNSTWCARKAATV 457

Query: 61  VANTQYIVGVEMLLAAQGLTMTEELLKDFVLGEGTQVAYDEIRRQIPACLDGDRWFHDDV 120
           VANTQYI+GVEMLLAAQ LTMTE+LL  FVLG+GTQ AY EIRRQIPACL+GDRWFH+D+
Sbjct: 458 VANTQYIIGVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDI 517

Query: 121 QAAHGFVVSGSVREAVIAAIGTFV 144
             A  FVVSGSVR AV   IG FV
Sbjct: 518 VVAQSFVVSGSVRNAVSKKIGDFV 541