BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3914.p (586 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777912.1| methyl-accepting chemotaxis transducer trans... 647 0.0 ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 558 e-156 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 440 e-121 gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis pr... 424 e-116 ref|YP_004215574.1| methyl-accepting chemotaxis sensory transduc... 423 e-116 >ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66004.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 466/597 (78%), Positives = 527/597 (88%), Gaps = 11/597 (1%) Query: 1 MNIKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRE 60 M +K+IKIS RLA CF +L+ VMCLI GVGM+SL SISK+S ++VEDRY KIAL +EIR+ Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NVNSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQD 120 NVN AARNLRNA+LGRN +EA RYLDR AANSAKTTE++ ++EK++ST RG+ELF++IQ+ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAE 180 AR+ Y+T RDKLRELI QQKKEEA E+LF +VIP QD+YF VL+ FVAFQ++LM++SV E Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 GQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGET 240 G+ T+ SAIA+ML LSAVAI LCV+AAW VTRSITRPLNEAV VASAVA GDLTVQIG T Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 TRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSRTEEQAGALEE 300 ++DETG LLA+LK+MN +LHRIVSEVR GSDTINTAS+EIA+GNLDLSSRTEEQAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANQLAASASDVAVQGGSVVGQVVQTMGEINEASKKIVDI 360 TASAMEELTSTVKQNADNARQAN LAA+AS+VAVQGGSVVGQVVQTMGEIN+AS+KIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAIVQMDEVT 480 V+RVDNGSRLVEQAG+TM EVVASV+RVTDVVAEISAASNEQSDGIEQINHAI QMD+VT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 481 QQNAALVEQAAAAAQSLQEQSGRLVETVSIFKLSSQETPRAQPARKPVPPKASSKPVAAA 540 QQNAALVE+AAAAAQSLQEQS RL TVS+FKLSS +TP A RKP P +A+S+P AAA Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSHDTPHAAAPRKPAPAQAASRPAAAA 540 Query: 541 P--AAPAK---------AAVAAPVPAPKALPAKPAAPASAKAGSKAMAADDGDWEQF 586 AP+K + + PKALP+KPAAPASAKAGSKAMAADDGDWEQF Sbjct: 541 TVRTAPSKPAAVLASSASPASPASTTPKALPSKPAAPASAKAGSKAMAADDGDWEQF 597 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 381/586 (65%), Positives = 453/586 (77%), Gaps = 11/586 (1%) Query: 1 MNIKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRE 60 M I ++KIS RL ACF L+ VMC+IAGVG+++L +S A+ +V DRYVK+AL +I + Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQD 120 VN+ AR+LRNA++ RNP+E K+YLDR +++ +E + ++EK +TPRG EL A++ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAE 180 ARA YS R K+ +LI QQK++EAT LF++ IP QD+YF + + V+FQ +LMD+S Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 GQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGET 240 S SAI +ML LS VA+LL L A +TRSITRPLNEAV VA+AVA GDLTVQI T Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 TRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSRTEEQAGALEE 300 ++DETG LL +LK+MN NLHRIV+EVR G+DTINTAS EIA+GNLDLSSRTE+QAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTVKQNADNARQANQLAASASDVAVQGGSVVGQVVQTMGEINEASKKIVDI 360 TASAMEELTSTV+QNADNARQAN LA +AS VA+QGGSVVG+VVQTMG+IN+AS+KIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK+LID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAIVQMDEVT 480 V RV++GSRLV QAG+TM EVVASVKRVTDVVAEI+AAS EQSDGIEQIN AIVQMDEVT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEQAAAAAQSLQEQSGRLVETVSIFKLSSQETPRAQPARKPVPPKASSKPVAAA 540 QQNAALVEQAAAAAQSLQEQSGRL +TV IF+L + + P PV + V A Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPV-----QRSVQVA 536 Query: 541 PAAPAKAAVAAPVPAPKALPAKPAAPASAKAGSKAMAADDGDWEQF 586 PA P A P + PA A A DG WEQF Sbjct: 537 PARPVLAR------KPVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 312/589 (52%), Positives = 405/589 (68%), Gaps = 28/589 (4%) Query: 3 IKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRENV 62 +KN+KI RLA FG +VAV+ ++A + L + A +V DRY K I++ + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 NSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQDAR 122 N ARN+RNA+L + + K LD S E+++++++ I + +G+ KA+ DAR Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 ATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAEGQ 182 ++ +DK L+ Q + EA +LF EV P Q Y L+ V FQ LM ++ + Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 QTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGETTR 242 + S +A L+ LS +A+++ + TRSITRPL++AV +A VA GDLT I T++ Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSRTEEQAGALEETA 302 DETG+LL +L+ MN L RIV++VR G+DTI TASS+IA+GNLDLSSRTEEQA +LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANQLAASASDVAVQGGSVVGQVVQTMGEINEASKKIVDIIS 362 S+MEELTSTVKQNADNARQ+NQLA +AS+VAV+GG+VV QVV+TMG IN+++ KIVDII Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVT 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 RVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAIVQMDEVTQQ 482 +V+NGSRLV AG+TM EVV SV+RVTD++ EI+AAS EQ+DGIEQIN A++QMD+VTQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEQAAAAAQSLQEQSGRLVETVSIFKLSSQETPRAQPARKPVPPKASSKPVAAAPA 542 NAALVE+AAAAA+SLQ+Q+ L + VS+FKL A A A Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLD-----------------------ANAVA 517 Query: 543 APAKAAVAAPVPAPKALPAKPAAPAS-----AKAGSKAMAADDGDWEQF 586 A + VAAP P + PA+ A+ + + A A D +WEQF Sbjct: 518 LQATSRVAAPASRPVSKPAQQIRSANVDKQIVRQRASATAGDGDEWEQF 566 >gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis protein I [Rahnella aquatilis] Length = 554 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 284/540 (52%), Positives = 382/540 (70%), Gaps = 13/540 (2%) Query: 3 IKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRENV 62 I N+++ ARL A F +++ ++ +++ + + SI+ + ++ DRYVK+ L ++R+ V Sbjct: 5 INNMRVGARLGAAFSLVILLLIIVSVTAVTKISSINSSIEQIISDRYVKVRLAFDVRDGV 64 Query: 63 NSAARNLRNAMLG-RNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQDA 121 N + LR ++ +NP++ + + + +T +M++I + +T GK+ KA+QDA Sbjct: 65 NDQIKYLRGIVIDTKNPEQNNKRYLQLDDSVKQTNLAMDKIAAIQTTVVGKQKIKALQDA 124 Query: 122 RATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAEG 181 + ++++L L + ATE + ++ Q+ Y D+ + F Q + + Sbjct: 125 SDIFEAAKEQLVALARAGDMDGATEFVLRKLTTSQNAYLDLASAFANSQDQQLQAEGKKA 184 Query: 182 QQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGETT 241 +AI L L S +AIL+ +++TRSITRPL+ AV VA VA GDLT QI T+ Sbjct: 185 IADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAGDLTTQIQVTS 244 Query: 242 RDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSRTEEQAGALEET 301 DETG+L+ LK MN+NL +IV+EVR G++ I++AS EIA+GNLDLSSRTE+QA +LEET Sbjct: 245 GDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGEIAAGNLDLSSRTEQQASSLEET 304 Query: 302 ASAMEELTSTVKQNADNARQANQLAASASDVAVQGGSVVGQVVQTMGEINEASKKIVDII 361 ASAME++T+TVKQNADNARQANQLAA AS VAVQGG VVG+VV TM IN +S+KIVDII Sbjct: 305 ASAMEQMTATVKQNADNARQANQLAAQASRVAVQGGEVVGEVVNTMEGINASSRKIVDII 364 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSV 421 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK LIDDSV Sbjct: 365 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIDDSV 424 Query: 422 TRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAIVQMDEVTQ 481 +VDNG++LV +AGSTM EVV+SVK VTD+V EI+ ASNEQS GIE+IN AI QMDEVTQ Sbjct: 425 AKVDNGTQLVAKAGSTMAEVVSSVKSVTDIVGEIAIASNEQSTGIEEINKAITQMDEVTQ 484 Query: 482 QNAALVEQAAAAAQSLQEQSGRLVETVSIFKLSS------------QETPRAQPARKPVP 529 QNAALV++A++AA SL EQ+ RL + +SIFK+S+ +TP R+PVP Sbjct: 485 QNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGSATAAVRKAAHAKTPALLSNRQPVP 544 >ref|YP_004215574.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602] gb|ADW76447.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602] Length = 554 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 286/540 (52%), Positives = 383/540 (70%), Gaps = 13/540 (2%) Query: 3 IKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRENV 62 I N+++ ARL A F +++ ++ +++G+ + + SI+ + ++ DRYVK+ L ++R+ V Sbjct: 5 INNMRVGARLGAAFSLVILLLVIVSGIAITKISSINTSIEQIISDRYVKVRLAFDVRDGV 64 Query: 63 NSAARNLRNAMLG-RNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQDA 121 N + LR ++ +NP++ K+ + KT +M++I + ST GK+ K +Q+A Sbjct: 65 NDQIKYLRGIVIDTKNPEQNKKRYLQLDDTVKKTNLAMDKIAAIQSTVTGKQKIKTLQEA 124 Query: 122 RATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAEG 181 T+ T++++L L + ATE + ++ Q+ Y D+ F Q + Sbjct: 125 GETFETAKEQLIALARAGDMDGATEFVLRKLTTSQNAYLDLATAFANSQDQQLQAEGKTA 184 Query: 182 QQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGETT 241 +AI L L SA+AIL+ +++TRSITRPL+ AV VA VA GDLT QI + Sbjct: 185 IADGATAIQLTLIFSALAILMAAALGYFLTRSITRPLHTAVKVAENVAAGDLTTQIQVMS 244 Query: 242 RDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSRTEEQAGALEET 301 +DETG+L+ LK MN+NL +IV+EVR G++ I +ASSEIA+GNLDLSSRTE+QA +LEET Sbjct: 245 QDETGQLMQGLKNMNENLLKIVTEVRAGTNAITSASSEIAAGNLDLSSRTEQQASSLEET 304 Query: 302 ASAMEELTSTVKQNADNARQANQLAASASDVAVQGGSVVGQVVQTMGEINEASKKIVDII 361 ASAME++T+TVKQNADNARQAN LAA AS VAVQGG VVG+VV TM IN +S+KIVDII Sbjct: 305 ASAMEQMTATVKQNADNARQANLLAAQASRVAVQGGEVVGEVVNTMEGINTSSRKIVDII 364 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSV 421 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK LIDDSV Sbjct: 365 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIDDSV 424 Query: 422 TRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAIVQMDEVTQ 481 +VDNG++LV +AG+TM EVV+SVK VTD+V EI+ ASNEQS GIE+IN AI QMDEVTQ Sbjct: 425 AKVDNGTQLVAKAGATMAEVVSSVKNVTDIVGEIAIASNEQSTGIEEINKAITQMDEVTQ 484 Query: 482 QNAALVEQAAAAAQSLQEQSGRLVETVSIFKLSS------------QETPRAQPARKPVP 529 QNAALV++A++AA SL EQ+ RL + +SIFK+S+ ++P R+PVP Sbjct: 485 QNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGSATAAVRKAGQTKSPALLSNRQPVP 544