BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3913.p (608 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777912.1| methyl-accepting chemotaxis transducer trans... 582 e-164 ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 537 e-150 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 442 e-121 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 425 e-116 ref|YP_004215574.1| methyl-accepting chemotaxis sensory transduc... 425 e-116 >ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66004.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 411/593 (69%), Positives = 481/593 (81%), Gaps = 9/593 (1%) Query: 24 VRISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 ++ISVRLAVCFAVLIGVMC+ITG+ +KSL+ + KS+A IVEDRY+KIALA +I DNVNGA Sbjct: 6 IKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNVNGA 65 Query: 84 VRSLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAY 143 R+LR+ALLGR EE+ +Y ++ + SAKT +AL ++EK+L++ R +++ + + +AR+AY Sbjct: 66 ARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQEARSAY 125 Query: 144 TPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTA 203 RDKLRELIKQ KKEE ELLF +V+P QDKY + LD FVA+QK++M++SV +G+ T Sbjct: 126 NTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEGRDTT 185 Query: 204 SSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDET 263 SA ++ML LS AI +CV AAWLVTRSIT PLN+AVS+A AVA GDLTV+I AT+KDET Sbjct: 186 QSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGATSKDET 245 Query: 264 GTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTEEQAGSLEETASAM 323 G LLA+LKSMN++LHRIV++VRQG+D I TAS EIA+GNLDLSSRTEEQAG+LEETASAM Sbjct: 246 GALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETASAM 305 Query: 324 EELTSTVKQNADNARQANTLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID 383 EELTSTVKQNADNARQAN+LAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID Sbjct: 306 EELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID 365 Query: 384 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVTRVD 443 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSV+RVD Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVD 425 Query: 444 NGSRLVEQAGSTMSEVVASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAA 503 NGSRLVEQAG+TM+EVVASV+RVTDVV EISAAS+EQS GIEQIN AI QMD+VTQQNAA Sbjct: 426 NGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAA 485 Query: 504 LVEEAAAAAQSLQEQSHRLSETVSIFRLDSQHA--------AMGSATAYAKPVRQPVASK 555 LVEEAAAAAQSLQEQS RLS TVS+F+L S + A V + Sbjct: 486 LVEEAAAAAQSLQEQSTRLSATVSVFKLSSHDTPHAAAPRKPAPAQAASRPAAAATVRTA 545 Query: 556 PAAPKPAAQKPAATPPAPAVAVPALPAKTAANAAIAKASSKAPPAGEGDWEQF 608 P+ P A+ + AL A A AKA SKA A +GDWEQF Sbjct: 546 PSKPAAVLASSASPASPASTTPKAL-PSKPAAPASAKAGSKAMAADDGDWEQF 597 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 369/585 (63%), Positives = 450/585 (76%), Gaps = 15/585 (2%) Query: 24 VRISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 ++ISVRL CFA LI VMCVI G+ +K+L V +T EIV DRY K+AL + I+D VN Sbjct: 7 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 66 Query: 84 VRSLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAY 143 RSLR+A++ R PEE KY ++ +++++ + LA++EK +PR ++L + AR Y Sbjct: 67 ARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQARADY 126 Query: 144 TPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTA 203 + R K+ +LI Q K++E T LF + +PVQDKY A+ + V++Q ++MD+S + + Sbjct: 127 SKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERASAAS 186 Query: 204 SSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDET 263 SSA ++ML+LSG A+L+ A L+TRSIT PLN+AV +A AVA GDLTV+IEAT+KDET Sbjct: 187 SSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATSKDET 246 Query: 264 GTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTEEQAGSLEETASAM 323 G LL +LKSMN+NLHRIV +VR GTD I TAS+EIA+GNLDLSSRTE+QAG+LEETASAM Sbjct: 247 GALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASAM 306 Query: 324 EELTSTVKQNADNARQANTLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID 383 EELTSTV+QNADNARQANTLA TAS+VA+QGGSVVG+VVQTMG+INDASRKIVDIISVID Sbjct: 307 EELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVID 366 Query: 384 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVTRVD 443 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK+LID SV RV+ Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERVE 426 Query: 444 NGSRLVEQAGSTMSEVVASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAA 503 +GSRLV QAG+TM EVVASVKRVTDVV EI+AAS EQS GIEQIN+AI QMDEVTQQNAA Sbjct: 427 SGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAA 486 Query: 504 LVEEAAAAAQSLQEQSHRLSETVSIFRLDSQHAAMGSATAYAKPVRQPVASKPAAPKPAA 563 LVE+AAAAAQSLQEQS RLS+TV IFRL + HA S + PV++ V PA P A Sbjct: 487 LVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPS--PLSAPVQRSVQVAPARPV-LA 543 Query: 564 QKPAATPPAPAVAVPALPAKTAANAAIAKASSKAPPAGEGDWEQF 608 +KP APA ++PA A A +G WEQF Sbjct: 544 RKPVTRTSAPAKSIPAAQPVAQAALA------------DGQWEQF 576 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 301/534 (56%), Positives = 388/534 (72%), Gaps = 1/534 (0%) Query: 24 VRISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 ++I RLA+ F ++ V+ V+ IA L++++ + + DRY K A I D +N Sbjct: 4 LKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLNET 63 Query: 84 VRSLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAY 143 R++R+ALL + + + S +AL ++++ + S + + +K + DAR + Sbjct: 64 ARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARGRF 123 Query: 144 TPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTA 203 TP +DK L+ Q + E LLF EV P Q +Y+ LD V +Q +M ++ + + Sbjct: 124 TPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEVS 183 Query: 204 SSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDET 263 ++A L+ +LS A++I +L TRSIT PL+QAV +A VA GDLT I T+KDET Sbjct: 184 ANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDET 243 Query: 264 GTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTEEQAGSLEETASAM 323 G LL +L+ MN L RIVTQVR GTD I TAS +IA+GNLDLSSRTEEQA SLEETAS+M Sbjct: 244 GQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSM 303 Query: 324 EELTSTVKQNADNARQANTLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID 383 EELTSTVKQNADNARQ+N LA TASEVAV+GG+VV QVV+TMG IND++ KIVDII VID Sbjct: 304 EELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVID 363 Query: 384 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVTRVD 443 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK LIDDSV +V+ Sbjct: 364 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVN 423 Query: 444 NGSRLVEQAGSTMSEVVASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAA 503 NGSRLV AG+TM+EVV SV+RVTD++GEI+AAS EQ+ GIEQIN+A+ QMD+VTQQNAA Sbjct: 424 NGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAA 483 Query: 504 LVEEAAAAAQSLQEQSHRLSETVSIFRLDSQHAAMGSATAYAKPVRQPVASKPA 557 LVEEAAAAA+SLQ+Q++ LS+ VS+F+LD+ A+ + + A P +PV SKPA Sbjct: 484 LVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQATSRVAAPASRPV-SKPA 536 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 292/538 (54%), Positives = 372/538 (69%), Gaps = 1/538 (0%) Query: 24 VRISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 ++I RL++ F ++ ++ V+ +A + + + +E+ DRY K LA+ + D++N Sbjct: 4 LKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQI 63 Query: 84 VRSLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAY 143 R++R+ALL Q + AL ++EK + S R + + + R+ + Sbjct: 64 ARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADRSKF 123 Query: 144 TPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTA 203 P +D +L K+E LLF EV P Q YL ++D + YQ +M +S + A Sbjct: 124 LPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEANAKA 183 Query: 204 SSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDET 263 S L+ + S A+LI A L TRSIT PL+QAV +A VA GDLT I +KDET Sbjct: 184 SQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDET 243 Query: 264 GTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTEEQAGSLEETASAM 323 G LL +LK MNE L +IVTQVR GTD I +AS +IA+GNLDLSSRTE+QA SLEETAS+M Sbjct: 244 GQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASSM 303 Query: 324 EELTSTVKQNADNARQANTLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID 383 EELTSTVKQNA+NARQ+N LA +ASEVAV+GG+VV +VV TMGEIND+++KIVDII VID Sbjct: 304 EELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVID 363 Query: 384 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVTRVD 443 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK LI DSV +V Sbjct: 364 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVS 423 Query: 444 NGSRLVEQAGSTMSEVVASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAA 503 GSRLV+ AG+TM EVV SVKRVTD++ EI+AAS EQ+ GIEQIN+A+ QMD+VTQQNAA Sbjct: 424 IGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAA 483 Query: 504 LVEEAAAAAQSLQEQSHRLSETVSIFRLDSQHAAMGSAT-AYAKPVRQPVASKPAAPK 560 LVEEAAAAA+SLQ Q+ LS+ V +F+LD + +A Y P + VA K A K Sbjct: 484 LVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVPTYTAPEQPKVAGKAALHK 541 >ref|YP_004215574.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602] gb|ADW76447.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602] Length = 554 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 285/543 (52%), Positives = 381/543 (70%), Gaps = 3/543 (0%) Query: 24 VRISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 +R+ RL F+++I ++ +++GIA+ ++ + S +I+ DRY K+ LA D+ D VN Sbjct: 8 MRVGARLGAAFSLVILLLVIVSGIAITKISSINTSIEQIISDRYVKVRLAFDVRDGVNDQ 67 Query: 84 VRSLRDALLG-RTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNA 142 ++ LR ++ + PE++ K Q KT A+ +I + ++ K +K + +A Sbjct: 68 IKYLRGIVIDTKNPEQNKKRYLQLDDTVKKTNLAMDKIAAIQSTVTGKQKIKTLQEAGET 127 Query: 143 YTPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQT 202 + ++++L L + + TE + +++ Q+ YL F Q + Sbjct: 128 FETAKEQLIALARAGDMDGATEFVLRKLTTSQNAYLDLATAFANSQDQQLQAEGKTAIAD 187 Query: 203 ASSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDE 262 ++A L L+ S AIL+ A + +TRSIT PL+ AV +A VA GDLT +I+ ++DE Sbjct: 188 GATAIQLTLIFSALAILMAAALGYFLTRSITRPLHTAVKVAENVAAGDLTTQIQVMSQDE 247 Query: 263 TGTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTEEQAGSLEETASA 322 TG L+ LK+MNENL +IVT+VR GT+AIT+AS EIA+GNLDLSSRTE+QA SLEETASA Sbjct: 248 TGQLMQGLKNMNENLLKIVTEVRAGTNAITSASSEIAAGNLDLSSRTEQQASSLEETASA 307 Query: 323 MEELTSTVKQNADNARQANTLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVI 382 ME++T+TVKQNADNARQAN LAA AS VAVQGG VVG+VV TM IN +SRKIVDII+VI Sbjct: 308 MEQMTATVKQNADNARQANLLAAQASRVAVQGGEVVGEVVNTMEGINTSSRKIVDIIAVI 367 Query: 383 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVTRV 442 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK LIDDSV +V Sbjct: 368 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIDDSVAKV 427 Query: 443 DNGSRLVEQAGSTMSEVVASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNA 502 DNG++LV +AG+TM+EVV+SVK VTD+VGEI+ AS+EQS GIE+IN+AI QMDEVTQQNA Sbjct: 428 DNGTQLVAKAGATMAEVVSSVKNVTDIVGEIAIASNEQSTGIEEINKAITQMDEVTQQNA 487 Query: 503 ALVEEAAAAAQSLQEQSHRLSETVSIFRLDSQHAAMGSATAYAKPVRQPVASKPAAPKPA 562 ALV+EA++AA SL EQ+ RLS+ +SIF++ + A +A A + P P PA Sbjct: 488 ALVQEASSAAYSLNEQAERLSQAISIFKVSAGSAT--AAVRKAGQTKSPALLSNRQPVPA 545 Query: 563 AQK 565 A + Sbjct: 546 ADQ 548