BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3912.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777911.1| two component sensor histidine kinase [Herba...   150   8e-35
ref|YP_004755084.1| integral membrane sensor signal transduction...    86   3e-15
ref|YP_003165684.1| integral membrane sensor signal transduction...    73   2e-11
ref|YP_003003706.1| histidine kinase [Dickeya zeae Ech1591] >gi|...    71   8e-11
ref|YP_004613688.1| integral membrane sensor signal transduction...    70   2e-10

>ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ66003.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 485

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 81/102 (79%), Positives = 86/102 (84%)

Query: 27  RAHQVELEMWSMRVSLTDAARQVALELSQQAVARRIGLAFEEEGDVGIEANALLLHELMV 86
           RA     E  +M +SL+DAARQVALELSQQAV+R IGLAFEEEGDV IEANALLLHELMV
Sbjct: 314 RAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLLHELMV 373

Query: 87  NLLDNAIRYTPIGGQVTLRVRAMRRPGQPTAALLEVEDNGPG 128
           NLLDNAIRYTP GG VTLRVRA   PGQPT ALLEVED+GPG
Sbjct: 374 NLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPG 415


>ref|YP_004755084.1| integral membrane sensor signal transduction histidine kinase
           [Collimonas fungivorans Ter331]
 gb|AEK64261.1| integral membrane sensor signal transduction histidine kinase
           [Collimonas fungivorans Ter331]
          Length = 502

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 27  RAHQVELEMWSMRVSLTDAARQVALELSQQAVARRIGLAFEEEGDVGIEANALLLHELMV 86
           RA     E  +  VSLTD A QV +E ++ AV ++I L+F+    + +  NALLLHEL+ 
Sbjct: 330 RAEHGAAESGNEPVSLTDIAHQVGMEQARAAVKKQIDLSFDAADQLIVSGNALLLHELIS 389

Query: 87  NLLDNAIRYTPIGGQVTLRVRAMRRPGQPTAALLEVEDNGPG 128
           NLLDNAI YTP GG++ LRV   RR  +   ALLEVED+G G
Sbjct: 390 NLLDNAIHYTPAGGKIVLRV---RRDSEARRALLEVEDSGMG 428


>ref|YP_003165684.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gb|ACV33755.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 474

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 5/85 (5%)

Query: 47  RQVALELSQQAVARRIGLAFEEEGDVGIEANALLLHELMVNLLDNAIRYTPIGGQVTLRV 106
           R++      +A+ +RI L +E  G V IE NA LL E++ NLLDNA+RYTP GG+VT RV
Sbjct: 312 REIVETWVVRALDKRIDLGYEAAGAVLIEGNAFLLREMINNLLDNALRYTPAGGRVTARV 371

Query: 107 RAMRRPGQPTAALLEVEDNGPGARD 131
            A     Q   A+LE+ED+GPG  D
Sbjct: 372 VA-----QGDFAVLEIEDSGPGIAD 391


>ref|YP_003003706.1| histidine kinase [Dickeya zeae Ech1591]
 gb|ACT06227.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 463

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query: 26  LRAHQVELEMWSMRVSLTDAARQVALELSQQAVARRIGLAFEEEGDVGIEANALLLHELM 85
           LRA   +  +W   V L +  R        QA +RRI L +E +    I    LLL EL 
Sbjct: 306 LRAQDSKEHIWQT-VDLAELVRDACFSRLPQARSRRIDLGYEGDERCLIRGEPLLLAELC 364

Query: 86  VNLLDNAIRYTPIGGQVTLRVRAMRRPGQPTAALLEVEDNGPGARDCRHAQGQR------ 139
           VNLLDNA++YTP GG VT RV+A +         L+++D+GPG      AQ  R      
Sbjct: 365 VNLLDNALKYTPQGGVVTARVQAQQ---------LDIDDSGPGIPVTERAQAMRPFHRLD 415

Query: 140 -HAGCPGA 146
            H G PGA
Sbjct: 416 NHHGLPGA 423


>ref|YP_004613688.1| integral membrane sensor signal transduction histidine kinase
           [Mesorhizobium opportunistum WSM2075]
 gb|AEH89594.1| integral membrane sensor signal transduction histidine kinase
           [Mesorhizobium opportunistum WSM2075]
          Length = 450

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 6/115 (5%)

Query: 39  RVSLTDAARQVALELSQQAVARRIGLAFEEEGDVGIEANALLLHELMVNLLDNAIRYTPI 98
           RV L +AAR V    +  A+AR I L  EE G V +  +  +L E++VNL+DNA+RY+P+
Sbjct: 305 RVDLAEAARHVLETQAPTAIARNIDLGLEEAGPVPVTGDGTMLREMIVNLVDNALRYSPV 364

Query: 99  GGQVTLRVRAMRRPGQPTAALLEVEDNGPG-ARDCRHAQGQRHAGCPGARQRAGG 152
           GG+VT+ + A+        A+L V DNGPG   D R    +R     G+ ++  G
Sbjct: 365 GGRVTVSLAAL-----DGEAVLTVADNGPGIPADEREHVFERFYRVAGSSEQGSG 414