BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3911.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum sero...   184   5e-45
ref|XP_002540342.1| conserved hypothetical protein [Ricinus comm...   182   1e-44
ref|YP_004753670.1| histidine ammonia-lyase [Collimonas fungivor...   167   3e-40
ref|YP_004754100.1| histidine ammonia-lyase [Collimonas fungivor...   167   4e-40
ref|YP_001352205.1| histidine ammonia-lyase [Janthinobacterium s...   166   9e-40

>ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1]
 gb|ADJ66005.1| histidine ammonia-lyase protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 98/136 (72%), Positives = 104/136 (76%), Gaps = 3/136 (2%)

Query: 2   PTSPSSSKASPMRRATACCDNSSATCRAASVSETRMDHISNSTWCARKAMTVVQNTQYIV 61
           P    S  +  M   T C   S  +  +   SE   DHISNSTWCARKAMTVVQNTQYIV
Sbjct: 410 PVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSE---DHISNSTWCARKAMTVVQNTQYIV 466

Query: 62  GVEMLLAAQALTMTEELLKDFKLGQGTQAAYEEIRRQIPACLEGDRWFHDDVRAAHDFVV 121
           GVEMLLAAQALTMTE LLKDF LGQGTQAAY EIRRQIPACL+GDRWFHDDV+AAH FVV
Sbjct: 467 GVEMLLAAQALTMTEALLKDFVLGQGTQAAYAEIRRQIPACLDGDRWFHDDVQAAHGFVV 526

Query: 122 SGSVREAVIGAIGRFV 137
           SGSVR AV+ AIG FV
Sbjct: 527 SGSVRNAVLAAIGEFV 542


>ref|XP_002540342.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF22041.1| conserved hypothetical protein [Ricinus communis]
          Length = 144

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 98/136 (72%), Positives = 104/136 (76%), Gaps = 3/136 (2%)

Query: 2   PTSPSSSKASPMRRATACCDNSSATCRAASVSETRMDHISNSTWCARKAMTVVQNTQYIV 61
           P    S  +  M   T C   S  +  +   SE   DHISNSTWCARKAMTVVQNTQYIV
Sbjct: 12  PVVQCSMSSLVMENRTLCMPGSVDSIPSKGNSE---DHISNSTWCARKAMTVVQNTQYIV 68

Query: 62  GVEMLLAAQALTMTEELLKDFKLGQGTQAAYEEIRRQIPACLEGDRWFHDDVRAAHDFVV 121
           GVEMLLAAQALTMTE LLKDF LGQGTQAAY EIRRQIPACL+GDRWFHDDV+AAH FVV
Sbjct: 69  GVEMLLAAQALTMTEALLKDFVLGQGTQAAYAEIRRQIPACLDGDRWFHDDVQAAHGFVV 128

Query: 122 SGSVREAVIGAIGRFV 137
           SGSVR AV+ AIG FV
Sbjct: 129 SGSVRNAVLAAIGEFV 144


>ref|YP_004753670.1| histidine ammonia-lyase [Collimonas fungivorans Ter331]
 gb|AEK62847.1| Histidine ammonia-lyase [Collimonas fungivorans Ter331]
          Length = 547

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 88/135 (65%), Positives = 97/135 (71%), Gaps = 3/135 (2%)

Query: 2   PTSPSSSKASPMRRATACCDNSSATCRAASVSETRMDHISNSTWCARKAMTVVQNTQYIV 61
           P    S  +  M   T C   S  +  A   SE   DH+SNSTWCARKA TVV NTQYI+
Sbjct: 415 PVVQCSLSSLVMENRTLCMPGSVDSIPAKGNSE---DHVSNSTWCARKAATVVANTQYII 471

Query: 62  GVEMLLAAQALTMTEELLKDFKLGQGTQAAYEEIRRQIPACLEGDRWFHDDVRAAHDFVV 121
           GVEMLLAAQALTMTE+LL  F LGQGTQAAY+EIRRQIPACLEGDRWFH+D+  A  FVV
Sbjct: 472 GVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDIAVAQSFVV 531

Query: 122 SGSVREAVIGAIGRF 136
           SGSVR AV+  IG F
Sbjct: 532 SGSVRNAVVEKIGEF 546


>ref|YP_004754100.1| histidine ammonia-lyase [Collimonas fungivorans Ter331]
 gb|AEK63277.1| Histidine ammonia-lyase [Collimonas fungivorans Ter331]
          Length = 542

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/135 (65%), Positives = 97/135 (71%), Gaps = 3/135 (2%)

Query: 2   PTSPSSSKASPMRRATACCDNSSATCRAASVSETRMDHISNSTWCARKAMTVVQNTQYIV 61
           P    S  +  M   T C   S  +  A   SE   DH+SNSTWCARKA TVV NTQYI+
Sbjct: 410 PVVQCSLSSLVMENRTLCMPGSVDSIPAKGNSE---DHVSNSTWCARKAATVVANTQYII 466

Query: 62  GVEMLLAAQALTMTEELLKDFKLGQGTQAAYEEIRRQIPACLEGDRWFHDDVRAAHDFVV 121
           GVEMLLAAQALTMTE+LL  F LGQGTQAAY+EIRRQIPACLEGDRWFH+D+  A  FVV
Sbjct: 467 GVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDIAVAQSFVV 526

Query: 122 SGSVREAVIGAIGRF 136
           SGSVR AV+  IG F
Sbjct: 527 SGSVRHAVVEKIGEF 541


>ref|YP_001352205.1| histidine ammonia-lyase [Janthinobacterium sp. Marseille]
 gb|ABR88411.1| histidine ammonia-lyase [Janthinobacterium sp. Marseille]
          Length = 541

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 89/136 (65%), Positives = 97/136 (71%), Gaps = 3/136 (2%)

Query: 2   PTSPSSSKASPMRRATACCDNSSATCRAASVSETRMDHISNSTWCARKAMTVVQNTQYIV 61
           P    S  +  M   T C   S  +  A   SE   DH+SNSTWCARKA TVV NTQYI+
Sbjct: 409 PVVQCSLSSLVMENRTLCMPGSVDSIPAKGNSE---DHVSNSTWCARKAATVVANTQYII 465

Query: 62  GVEMLLAAQALTMTEELLKDFKLGQGTQAAYEEIRRQIPACLEGDRWFHDDVRAAHDFVV 121
           GVEMLLAAQALTMTE+LL  F LGQGTQAAY+EIRRQIPACLEGDRWFH+D+  A  FVV
Sbjct: 466 GVEMLLAAQALTMTEDLLPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDIVVAQSFVV 525

Query: 122 SGSVREAVIGAIGRFV 137
           SGSVR AV   IG FV
Sbjct: 526 SGSVRNAVSKKIGDFV 541