BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3907.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776642.1| transthyreretyn-like protein [Herbaspirillum...   206   7e-52
ref|YP_001352208.1| transthyretin-like protein [Janthinobacteriu...   199   1e-49
ref|YP_004754095.1| transthyretin family protein [Collimonas fun...   185   2e-45
ref|YP_442596.1| transthyretin family protein [Burkholderia thai...   180   6e-44
ref|ZP_02374403.1| transthyretin family protein [Burkholderia th...   176   1e-42

>ref|YP_003776642.1| transthyreretyn-like protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64734.1| transthyreretyn-like (hydroxyisourate hydrolase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 117

 Score =  206 bits (525), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 105/117 (89%), Positives = 106/117 (90%)

Query: 33  MGKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGK 92
           MGKLSTHVLDITKGKPG GVKLALYAV   GKTLLK AVTNSDGRCD PLL GEALQ GK
Sbjct: 1   MGKLSTHVLDITKGKPGVGVKLALYAVGPVGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60

Query: 93  YELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 149
           YELVFAAGDYFA QG  LPEPRFVDEVVIAFG+ADASQNYHVPLVVSPWAYSTYRGS
Sbjct: 61  YELVFAAGDYFAAQGEQLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117


>ref|YP_001352208.1| transthyretin-like protein [Janthinobacterium sp. Marseille]
 gb|ABR90011.1| Transthyretin-like protein [Janthinobacterium sp. Marseille]
          Length = 118

 Score =  199 bits (505), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 99/118 (83%), Positives = 105/118 (88%), Gaps = 1/118 (0%)

Query: 33  MGKLSTHVLDITKGKPGAGVKLALYAV-TGGGKTLLKHAVTNSDGRCDAPLLEGEALQPG 91
           MGKLSTHVLDITKGKPGAGVKLALY V   G K +LK+AVTN DGRCDAPLL+G  +Q G
Sbjct: 1   MGKLSTHVLDITKGKPGAGVKLALYTVDAAGNKEILKNAVTNDDGRCDAPLLQGAEMQVG 60

Query: 92  KYELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 149
           KYELVFAAGDYFA QGV LP PRFVDEVV+AFG+ADASQNYHVPLVVSPWAYSTYRGS
Sbjct: 61  KYELVFAAGDYFAAQGVDLPSPRFVDEVVLAFGIADASQNYHVPLVVSPWAYSTYRGS 118


>ref|YP_004754095.1| transthyretin family protein [Collimonas fungivorans Ter331]
 gb|AEK63272.1| transthyretin family protein [Collimonas fungivorans Ter331]
          Length = 121

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/116 (76%), Positives = 100/116 (86%)

Query: 34  GKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGKY 93
           GKLSTHVLDIT+GKPGAGVK+ALYAVT  G+ LL  AVTN DGR DAPLL+GE +Q G+Y
Sbjct: 6   GKLSTHVLDITQGKPGAGVKIALYAVTPAGRNLLNSAVTNQDGRVDAPLLQGEEMQAGQY 65

Query: 94  ELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 149
           ELVF+AGDYFA QG+ LP PRFVD V +AFG+A A QNYHVPLVVSPW+YSTYRGS
Sbjct: 66  ELVFSAGDYFAAQGIDLPSPRFVDRVTLAFGIAHADQNYHVPLVVSPWSYSTYRGS 121


>ref|YP_442596.1| transthyretin family protein [Burkholderia thailandensis E264]
 gb|ABC37915.1| transthyretin family protein [Burkholderia thailandensis E264]
          Length = 194

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/117 (71%), Positives = 99/117 (84%)

Query: 33  MGKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGK 92
           MGKL+THVLD   G+PGA +K+ L+A++GGG  LLK A+TN DGRCDAPLLEG+AL  G 
Sbjct: 78  MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGT 137

Query: 93  YELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 149
           YELVF AGDYFA QGV+LPEPRFVD VV+ FGVAD + +YHVPL+VSPW+YSTYRGS
Sbjct: 138 YELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS 194


>ref|ZP_02374403.1| transthyretin family protein [Burkholderia thailandensis TXDOH]
 ref|ZP_02388272.1| transthyretin family protein [Burkholderia thailandensis Bt4]
 ref|ZP_05587068.1| transthyretin family protein [Burkholderia thailandensis E264]
          Length = 117

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/117 (71%), Positives = 99/117 (84%)

Query: 33  MGKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGK 92
           MGKL+THVLD   G+PGA +K+ L+A++GGG  LLK A+TN DGRCDAPLLEG+AL  G 
Sbjct: 1   MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGT 60

Query: 93  YELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 149
           YELVF AGDYFA QGV+LPEPRFVD VV+ FGVAD + +YHVPL+VSPW+YSTYRGS
Sbjct: 61  YELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS 117