BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3906.p         (170 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776634.1| TonB-dependent receptor protein [Herbaspiril...   216   9e-55
ref|YP_555318.1| putative TonB-dependent siderophore receptor [B...   158   3e-37
ref|ZP_08781340.1| TonB-dependent receptor [Methylobacter tundri...   130   6e-29
ref|YP_422910.1| Outer membrane receptor protein [Magnetospirill...   129   1e-28
ref|YP_001833480.1| TonB-dependent receptor [Beijerinckia indica...   128   3e-28

>ref|YP_003776634.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64726.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 755

 Score =  216 bits (550), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 120/149 (80%), Positives = 134/149 (89%), Gaps = 2/149 (1%)

Query: 22  PLRLHPLLLAVLCAWSGSALAQQAAASDGSSEAATLPTIEVRSSGSVAERKQLPQTTASV 81
           PLR   L+L+VL AWSG+ALAQQ+A    +S+AA LPTIEVR + +  +R QLPQT+ASV
Sbjct: 5   PLRRRRLILSVLSAWSGAALAQQSAVE--ASDAAALPTIEVRGTVAAPQRTQLPQTSASV 62

Query: 82  TADTAANSINVTDSSDALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSLIYADGILL 141
           TADTAA++INVTDS+DALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSL+YADGILL
Sbjct: 63  TADTAADTINVTDSADALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSLVYADGILL 122

Query: 142 SALVNNNNGNGSPRWFMVAPEEIERIDVM 170
           SALVNNNNGNGSPRWFMVAPEEI RIDVM
Sbjct: 123 SALVNNNNGNGSPRWFMVAPEEIARIDVM 151


>ref|YP_555318.1| putative TonB-dependent siderophore receptor [Burkholderia
           xenovorans LB400]
 gb|ABE35968.1| Putative TonB-dependent siderophore receptor [Burkholderia
           xenovorans LB400]
          Length = 821

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/118 (69%), Positives = 100/118 (84%), Gaps = 4/118 (3%)

Query: 57  LPTIEV--RSSGS--VAERKQLPQTTASVTADTAANSINVTDSSDALKYLPSLSVRKRYI 112
           LP ++V  ++SGS   AE+  LPQTT SVTA   A +IN+TD+ DALKYLP L VRKRYI
Sbjct: 71  LPAVQVSGQTSGSRSYAEKNLLPQTTESVTARQIAETINMTDTEDALKYLPDLLVRKRYI 130

Query: 113 GDTQSPLATRTTGVNASARSLIYADGILLSALVNNNNGNGSPRWFMVAPEEIERIDVM 170
           GDTQ+P+ATRTTG+NASARSL+YADG+LL+ L+NNNN NGSP+WFMVAP+EI+RIDVM
Sbjct: 131 GDTQAPMATRTTGINASARSLVYADGVLLTPLINNNNQNGSPQWFMVAPQEIDRIDVM 188


>ref|ZP_08781340.1| TonB-dependent receptor [Methylobacter tundripaludum SV96]
 gb|EGW23515.1| TonB-dependent receptor [Methylobacter tundripaludum SV96]
          Length = 810

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 1/128 (0%)

Query: 44  QAAASDGSSEAATLPTIEVRSSGSVAERKQLPQTTASVTADTAANSINVTDSSDALKYLP 103
           + A  D S       T+  + + +  ER +LP TT SVT +   N++N   + D +KYLP
Sbjct: 38  KKAPVDKSKAVMADMTVTEKIAPTAKERYKLPTTTESVTREKLDNTVNAMTAEDTIKYLP 97

Query: 104 SLSVRKRYIGDTQSPLATRTTGVNASARSLIYADGILLSALVNNNNGN-GSPRWFMVAPE 162
           S+ VRKRYIGDT +P+  RT+G  ASAR LIYADGILLS+L+ NNNGN GSPRW MV+P 
Sbjct: 98  SIQVRKRYIGDTNAPVGWRTSGTGASARGLIYADGILLSSLLGNNNGNTGSPRWNMVSPS 157

Query: 163 EIERIDVM 170
           EIER+DVM
Sbjct: 158 EIERVDVM 165


>ref|YP_422910.1| Outer membrane receptor protein [Magnetospirillum magneticum AMB-1]
 dbj|BAE52351.1| Outer membrane receptor protein [Magnetospirillum magneticum AMB-1]
          Length = 760

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 31  AVLCAWSG--SALAQQAAASDGSSEAATLPTIEVRSSGSVAERKQLPQTTASVTADTAAN 88
           A+LCA +   S +    A +    +A  +P + ++   SV ER ++P T  S+T +  A+
Sbjct: 9   ALLCAGTALCSLMILAGAPARAEDDATDMPEVVIKEKPSVMERYKIPNTAESITREKLAD 68

Query: 89  SINVTDSSDALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSLIYADGILLSALVNNN 148
           ++NV D  DA+KY+PSLSVRKR  GDTQ+ L TRT G N+SARSL+Y D I +SAL+ N+
Sbjct: 69  TVNVVDPEDAVKYMPSLSVRKRNNGDTQAVLMTRTWGYNSSARSLVYVDDIPISALLAND 128

Query: 149 NGNGSPRWFMVAPEEIERIDVM 170
           N  G PRW MVAPEEIER+D+M
Sbjct: 129 NTRGGPRWGMVAPEEIERVDMM 150


>ref|YP_001833480.1| TonB-dependent receptor [Beijerinckia indica subsp. indica ATCC
           9039]
 gb|ACB95991.1| TonB-dependent receptor [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 782

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/164 (45%), Positives = 102/164 (62%), Gaps = 3/164 (1%)

Query: 10  LSPSSPASAVSRPLRLH---PLLLAVLCAWSGSALAQQAAASDGSSEAATLPTIEVRSSG 66
           + P+S     +R L LH    LL +    +S  A AQ+          A  P++   +  
Sbjct: 1   MVPTSRGPTRNRALVLHIPVTLLASASSFFSTPATAQEPVELQDIVVTADHPSLASAAVP 60

Query: 67  SVAERKQLPQTTASVTADTAANSINVTDSSDALKYLPSLSVRKRYIGDTQSPLATRTTGV 126
            + ++ QLPQT+ S TA T A  IN+ D+ D++KY PSL VRKR  GDTQ  LATRT GV
Sbjct: 61  PIKQKYQLPQTSQSATAATIAEKINIIDTEDSVKYFPSLFVRKRNYGDTQPTLATRTWGV 120

Query: 127 NASARSLIYADGILLSALVNNNNGNGSPRWFMVAPEEIERIDVM 170
           N+SARSL+YAD +LLSAL+ NNN  G+PRW +V+PE I+R+D +
Sbjct: 121 NSSARSLVYADDLLLSALIANNNTLGAPRWGLVSPEAIDRVDFL 164