BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3903.p (153 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001604074.1| LysR family transcriptional regulator [Gluco... 177 4e-43 ref|YP_001603013.1| LysR family transcriptional regulator [Gluco... 177 7e-43 ref|YP_002277071.1| LysR family transcriptional regulator [Gluco... 175 2e-42 ref|YP_001417829.1| LysR family transcriptional regulator [Xanth... 174 4e-42 ref|YP_004119186.1| transcriptional regulator, LysR family [Pant... 161 3e-38 >ref|YP_001604074.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] emb|CAP57795.1| putative transcriptional Regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 300 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 99/146 (67%), Positives = 115/146 (78%) Query: 1 MGNLADSASVARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLSQLDNVWTFTRA 60 MG L+DS +VARK+AT RSVLAT AYL R P+ PADLA HE ++ SQ NVW+FTR Sbjct: 145 MGMLSDSTAVARKIATGGRSVLATPAYLARAGKPQSPADLANHEAIIYSQQPNVWSFTRD 204 Query: 61 STAVSVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIA 120 AVSV V GR+R +AAEG+RAA+LADMGL IASDWMFAPEL G++VRVLE W+LP I Sbjct: 205 GAAVSVSVGGRLRVSAAEGLRAALLADMGLTIASDWMFAPELENGAIVRVLEAWSLPPIG 264 Query: 121 LWAVFPTGRLASAKARAFADFVEEIM 146 LWAVFP GR+ +AKAR FA FVEEIM Sbjct: 265 LWAVFPAGRMMTAKARRFAAFVEEIM 290 >ref|YP_001603013.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] emb|CAP56719.1| putative transcriptional Regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 294 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 97/146 (66%), Positives = 116/146 (79%) Query: 1 MGNLADSASVARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLSQLDNVWTFTRA 60 MG L+DS +V RK+AT RRSV+AT AYL R PR PADLA H+T++ SQL +VW+FTR Sbjct: 145 MGALSDSTAVVRKVATGRRSVIATPAYLARAGVPRHPADLANHDTVIYSQLPSVWSFTRD 204 Query: 61 STAVSVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIA 120 AVSV V GR+R +AAEG+RAA+LADMGL I SDWMFAPEL G+VVRVLE W+LP I Sbjct: 205 GAAVSVSVSGRLRVSAAEGLRAAILADMGLTITSDWMFAPELERGAVVRVLEGWSLPPID 264 Query: 121 LWAVFPTGRLASAKARAFADFVEEIM 146 LWAVFP GR+ +AKAR FA FVE++M Sbjct: 265 LWAVFPAGRMMTAKARQFAGFVEDLM 290 >ref|YP_002277071.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gb|ACI52456.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 300 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 98/146 (67%), Positives = 114/146 (78%) Query: 1 MGNLADSASVARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLSQLDNVWTFTRA 60 MG L+DS +VARK+AT RSVLAT AYL R P+ PADLA HE ++ SQ N W+FTR Sbjct: 145 MGMLSDSTAVARKIATGGRSVLATPAYLARAGKPQSPADLANHEAIIYSQQPNAWSFTRD 204 Query: 61 STAVSVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIA 120 AVSV V GR+R +AAEG+RAA+LADMGL IASDWMFAPEL G++VRVLE W+LP I Sbjct: 205 GAAVSVSVGGRLRVSAAEGLRAALLADMGLTIASDWMFAPELENGAIVRVLEAWSLPPIG 264 Query: 121 LWAVFPTGRLASAKARAFADFVEEIM 146 LWAVFP GR+ +AKAR FA FVEEIM Sbjct: 265 LWAVFPAGRMMTAKARRFAAFVEEIM 290 >ref|YP_001417829.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS68172.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 292 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 99/148 (66%), Positives = 116/148 (78%) Query: 1 MGNLADSASVARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLSQLDNVWTFTRA 60 MG L DSA++AR++A +RRSV+AT AYL R P VPADLA HE +V SQL WTF R Sbjct: 145 MGELTDSAAIARQIARSRRSVIATPAYLSRAGTPLVPADLATHEAIVYSQLGASWTFRRN 204 Query: 61 STAVSVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIA 120 T SV V+GRVR +AAEGIRAAVLAD+GL + SDWMFAPE+ +G+V RVLE W LP + Sbjct: 205 GTEASVAVRGRVRLSAAEGIRAAVLADLGLTVNSDWMFAPEIESGAVRRVLEDWELPPVD 264 Query: 121 LWAVFPTGRLASAKARAFADFVEEIMLQ 148 LWAVFPTGRLASAKARAFAD+VE I+ Q Sbjct: 265 LWAVFPTGRLASAKARAFADYVESILAQ 292 >ref|YP_004119186.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] gb|ADU72630.1| transcriptional regulator, LysR family [Pantoea sp. At-9b] Length = 292 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 82/145 (56%), Positives = 107/145 (73%) Query: 1 MGNLADSASVARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLSQLDNVWTFTRA 60 MG L DS +VARKLAT+RRS LAT YL R P+ P +L++HE L+ S L++ W F+R Sbjct: 145 MGTLQDSGAVARKLATSRRSALATSEYLSRYGYPQHPRELSQHEALIFSPLNDTWQFSRK 204 Query: 61 STAVSVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIA 120 +V +QGR+ +AAEGIR+AVLA MG+ +ASDWMF+ E+ G+V R++ WTLPDI Sbjct: 205 DEVENVSLQGRLHLSAAEGIRSAVLAHMGITVASDWMFSEEITDGTVERLVSDWTLPDID 264 Query: 121 LWAVFPTGRLASAKARAFADFVEEI 145 LWAVFP GR+A+AKAR FA FVE + Sbjct: 265 LWAVFPGGRMATAKARQFAAFVESL 289