BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3902.p         (90 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004119186.1| transcriptional regulator, LysR family [Pant...   124   6e-27
ref|YP_002277071.1| LysR family transcriptional regulator [Gluco...   120   6e-26
ref|YP_001603013.1| LysR family transcriptional regulator [Gluco...   120   8e-26
ref|YP_001604074.1| LysR family transcriptional regulator [Gluco...   120   1e-25
ref|YP_001417829.1| LysR family transcriptional regulator [Xanth...   118   4e-25

>ref|YP_004119186.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gb|ADU72630.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 292

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/90 (72%), Positives = 77/90 (85%)

Query: 1  MDRLLAMTAFVRVVEAGSFSAAARVLGVGQPAVSKTVAQLEDKLKVRLLLRSTHGLTPTE 60
          MDR  AM  +V+VV+AGSFSAAAR+L +GQPAVSKT+AQLE  L VRLLLR+THGLTPTE
Sbjct: 1  MDRFQAMQMYVQVVDAGSFSAAARILNIGQPAVSKTIAQLEKHLDVRLLLRTTHGLTPTE 60

Query: 61 AGMRFFERARVAIQEAEEAELAARGAGAGL 90
          AG RF+ER R+ +Q+AEEAE+AARGA  GL
Sbjct: 61 AGQRFYERVRITLQQAEEAEIAARGADKGL 90


>ref|YP_002277071.1| LysR family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gb|ACI52456.1| transcriptional regulator, LysR family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 300

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/90 (78%), Positives = 78/90 (86%)

Query: 1  MDRLLAMTAFVRVVEAGSFSAAARVLGVGQPAVSKTVAQLEDKLKVRLLLRSTHGLTPTE 60
          MDR  AM  FVRVVE GSFSAAAR L VGQPAVSKT+AQLE +L+V LL+RSTHGLTPTE
Sbjct: 1  MDRYQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTE 60

Query: 61 AGMRFFERARVAIQEAEEAELAARGAGAGL 90
          AG  F+ERAR AIQEA+EAELAA+GAGAGL
Sbjct: 61 AGQSFYERARNAIQEADEAELAAKGAGAGL 90


>ref|YP_001603013.1| LysR family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 emb|CAP56719.1| putative transcriptional Regulator, LysR family
          [Gluconacetobacter diazotrophicus PAl 5]
          Length = 294

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 70/90 (77%), Positives = 78/90 (86%)

Query: 1  MDRLLAMTAFVRVVEAGSFSAAARVLGVGQPAVSKTVAQLEDKLKVRLLLRSTHGLTPTE 60
          MDR  AMT FVRV+E GSFSAAAR LGVGQPAVSKTVAQLE +L+V LL+R+THGLTPTE
Sbjct: 1  MDRYQAMTTFVRVLETGSFSAAARQLGVGQPAVSKTVAQLEARLQVSLLIRTTHGLTPTE 60

Query: 61 AGMRFFERARVAIQEAEEAELAARGAGAGL 90
          AG  F+ERAR AIQEA+EAELAA+GA  GL
Sbjct: 61 AGQNFYERARNAIQEADEAELAAKGASIGL 90


>ref|YP_001604074.1| LysR family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 emb|CAP57795.1| putative transcriptional Regulator, LysR family
          [Gluconacetobacter diazotrophicus PAl 5]
          Length = 300

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/90 (77%), Positives = 77/90 (85%)

Query: 1  MDRLLAMTAFVRVVEAGSFSAAARVLGVGQPAVSKTVAQLEDKLKVRLLLRSTHGLTPTE 60
          MDR  AM  FVRVVE GSFSAAAR L VGQPAVSKT+AQLE +L+V LL+RSTHGLTPTE
Sbjct: 1  MDRYQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTE 60

Query: 61 AGMRFFERARVAIQEAEEAELAARGAGAGL 90
           G  F+ERAR AIQEA+EAELAA+GAGAGL
Sbjct: 61 VGQSFYERARNAIQEADEAELAAKGAGAGL 90


>ref|YP_001417829.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gb|ABS68172.1| transcriptional regulator, LysR family [Xanthobacter
          autotrophicus Py2]
          Length = 292

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query: 1  MDRLLAMTAFVRVVEAGSFSAAARVLGVGQPAVSKTVAQLEDKLKVRLLLRSTHGLTPTE 60
          MDRL AM  FV VVEAGSFSAAAR +GVGQPA+SKT+AQLE++L+VRLL+RSTH L PT+
Sbjct: 1  MDRLQAMQVFVTVVEAGSFSAAARQIGVGQPAISKTIAQLEERLQVRLLVRSTHSLAPTD 60

Query: 61 AGMRFFERARVAIQEAEEAELAARGAGAGL 90
          AG+RF+ERAR AI+EA+EAEL ARGAGAGL
Sbjct: 61 AGVRFYERARAAIREADEAELEARGAGAGL 90