BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3900.p (452 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedica... 626 e-177 ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedica... 315 1e-83 ref|YP_001793098.1| type 12 methyltransferase [Leptothrix cholod... 248 1e-63 ref|ZP_08179036.1| Bifunctional adenylylsulfate kinase /sulfate ... 233 5e-59 ref|ZP_06705397.1| conserved hypothetical protein [Xanthomonas f... 233 5e-59 >ref|YP_003776631.1| methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ64723.1| methyltransferase (contains TPR repeat) protein [Herbaspirillum seropedicae SmR1] Length = 439 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 344/430 (80%), Positives = 378/430 (87%) Query: 22 LEELIEESFTSAFNHHAAGRLEAAEEDYRLILAMEEQYAPAQHYLGVLLHQCGRHEEGLA 81 L ++IEE F +AF HHAAGRLE AEEDYR+ LAMEE +AP QHYLG+LLHQ GRHEEG+ Sbjct: 9 LAQIIEEQFAAAFAHHAAGRLEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVT 68 Query: 82 LMHEAARTTPPDADWCNDLGNVLFACGRFDQAELAYGQALTLRSDDAQLWTNLGATRRAQ 141 LM +AA P DADWCND+GNVLFAC RFD+A AY QAL LR DDAQLWTNLGATRRAQ Sbjct: 69 LMRQAALAAPADADWCNDIGNVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGATRRAQ 128 Query: 142 GQHQAAIAACEQALATAPHSLAALHQLAEIHAHLGDRMQSSRYQCLAFVLPPHEGKSREL 201 GQHQAAIAACEQALATAPHSLAALHQLAEIHAHLGDRMQSSRYQC+AFVLPPHEGKSREL Sbjct: 129 GQHQAAIAACEQALATAPHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSREL 188 Query: 202 LAISFYFLGRVEEAAEVCRQWLREEPGHPIASHMHAAYAGLPSHSVPRDYIVRRFDEYAD 261 LAISFYFLGRV EAAEVCR+WL+EEPGHPIA+HMHAAYAGLPSH+VPRDYIVRRFD+YAD Sbjct: 189 LAISFYFLGRVAEAAEVCRRWLQEEPGHPIANHMHAAYAGLPSHTVPRDYIVRRFDDYAD 248 Query: 262 HFDSNLVSHLDYRGPEVLGMLLNAFLSEITPSMVLDAGCGTGLCAPVLAPYALALEGVDL 321 HFDSNLV+HLDYRGP+VL +L A L VLDAGCGTGLCAPVLAPYAL+LEGVDL Sbjct: 249 HFDSNLVTHLDYRGPQVLNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYALSLEGVDL 308 Query: 322 SPNMLRHAAQHPQYTALEQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSLQ 381 S NMLRHAAQH +Y+ L QADVVEWM AHP+RY LIAACDVLIYCG+LASFF AA+ +LQ Sbjct: 309 SSNMLRHAAQHGRYSTLAQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQ 368 Query: 382 PQGHLIFTVELAGEEHAAPYTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQQ 441 GHL+FTVELAG E Y LH SGRFRHQR+Y+E CL AAG++V+++REESLRVEMQQ Sbjct: 369 EGGHLVFTVELAGAERPDSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREESLRVEMQQ 428 Query: 442 AVPGLVVLAR 451 AVPGLVVLAR Sbjct: 429 AVPGLVVLAR 438 >ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63259.1| methyltransferase (contains TPR repeat) protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 193/429 (44%), Positives = 250/429 (58%), Gaps = 5/429 (1%) Query: 27 EESFTSAFNHHAAGRLEAAEEDYRLILAMEEQYAPAQHYLGVLLHQCGRHEEGLALMHEA 86 E A + H AGRL+ A Y +L + + A HY G+ LHQ G+H+E L + A Sbjct: 19 EALLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELA 78 Query: 87 ARTTPPDADWCNDLGNVLFACGRFDQAELAYGQALTLRSDDAQLWTNLGATRRAQGQHQA 146 + P +ADW ND GNVLFA + AE AY AL LR DD +W NLGA Q + Sbjct: 79 SALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPD 138 Query: 147 AIAACEQALATAPHSLAALHQLAEIHAHLGDRMQSSRYQCLAFVLPPHEGKSRELLAISF 206 AI+A E+AL P L +L L IH GD+MQ+S YQC A+VLPP EGKS E+L ISF Sbjct: 139 AISAFERALQIDPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISF 198 Query: 207 YFLGRVEEAAEVCRQWLREEPGHPIASHMHAA--YAGLPSHSVPRDYIVRRFDEYADHFD 264 YFLGR+ EAAE R WLREEP +PIA+HM AA A +P + R YI FD YA+ F+ Sbjct: 199 YFLGRLPEAAEAYRAWLREEPDNPIAAHMLAACSQADVPPRASDR-YIESHFDRYAETFE 257 Query: 265 SNLVSHLDYRGPEVLGMLLNAFLSEITPSMVLDAGCGTGLCAPVLAPYALALEGVDLSPN 324 +NL+ L YRGP ++ L +D GCGTGLC +APY+ L GVDL+ Sbjct: 258 ANLLQSLGYRGPRLIAEGLALIAPPAHQFAAIDIGCGTGLCGGQVAPYSHHLVGVDLAGK 317 Query: 325 MLRHAAQHPQYTALEQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSLQPQG 384 ML AA Y LE+A++ ++A HP L+ A D +IY G+LA A +L+ G Sbjct: 318 MLEKAAATGHYARLEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVMQAVALALRSGG 377 Query: 385 HLIFTVELAGEEHAAP--YTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQQA 442 H +FTVE AP + LH SGR+RH R YV LQA G +L ++ LR E++Q Sbjct: 378 HFVFTVEALTGADVAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDSDQILREEVRQP 437 Query: 443 VPGLVVLAR 451 V G++ +AR Sbjct: 438 VAGMLFVAR 446 >ref|YP_001793098.1| type 12 methyltransferase [Leptothrix cholodnii SP-6] gb|ACB36333.1| Methyltransferase type 12 [Leptothrix cholodnii SP-6] Length = 456 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 162/416 (38%), Positives = 229/416 (55%), Gaps = 6/416 (1%) Query: 42 LEAAEEDYRLILAMEEQYAPAQHYLGVLLHQCGRHEEGLALMHEAARTTPPDADWCNDLG 101 + AE YR +LA+ + A H+LG+LLHQ GR +EG+A + A P N+LG Sbjct: 39 FDGAETLYRRVLAVVPEQPDALHFLGMLLHQRGRSDEGIAHIERALAAEPAYVGAYNNLG 98 Query: 102 NVLFACGRFDQAELAYGQALTLRSDD----AQLWTNLGATRRAQGQHQAAIAACEQALAT 157 N+ + G A LAY +AL L D A L NLGA + Q + AA + EQALA Sbjct: 99 NIHASRGEIGNALLAYQRALALTPADSAEAADLHNNLGALHKVQRRWAAAQSHYEQALAI 158 Query: 158 APHSLAALHQLAEIHAHLGDRMQSSRYQCLAFVLPPHEGKSRELLAISFYFLGRVEEAAE 217 P + A + L +HA GD + R C A L P + R+LL I++Y +G++ EAAE Sbjct: 159 DPRHVNAHNNLGLLHAARGDLASAIRCYCQAIELMPGNSEGRKLLGITYYTVGKIAEAAE 218 Query: 218 VCRQWLREEPGHPIASHMHAAYAGLPSHSVPRD-YIVRRFDEYADHFDSNLVSHLDYRGP 276 V RQWL +EP HP+A HM+A+ +G+ + D Y+ FD +A F+ L L+Y+ P Sbjct: 219 VFRQWLADEPDHPVARHMYASCSGIHTPERAADNYVEYTFDRFAASFEQQLNERLNYQAP 278 Query: 277 EVLGMLLNAFLSEITPSMV-LDAGCGTGLCAPVLAPYALALEGVDLSPNMLRHAAQHPQY 335 ++ LL L +V LDAGCGTGLC P++AP+A L GVDLS ML A Y Sbjct: 279 QLCAALLQRRLPPPAAELVVLDAGCGTGLCGPLVAPWARTLAGVDLSRGMLDQAQTKGVY 338 Query: 336 TALEQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSLQPQGHLIFTVELAGE 395 L +A++ E++ P ++ +I + D L Y G+L AA SL+P G L+FTVE + Sbjct: 339 QDLYKAELTEFLRLSPDQWDVILSADTLCYFGDLHEVIGAAGRSLRPGGTLVFTVEALPD 398 Query: 396 EHAAPYTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQQAVPGLVVLAR 451 P+ L P GR+ H ++ ++ AGL +L + LR E Q V G +V AR Sbjct: 399 ALDRPFRLEPHGRYAHASGHLRAVVEQAGLGLLDLDAVVLREEGGQPVHGWLVAAR 454 >ref|ZP_08179036.1| Bifunctional adenylylsulfate kinase /sulfate adenylyltransferase subunit 1 [Xanthomonas vesicatoria ATCC 35937] gb|EGD08778.1| Bifunctional adenylylsulfate kinase /sulfate adenylyltransferase subunit 1 [Xanthomonas vesicatoria ATCC 35937] Length = 450 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 167/427 (39%), Positives = 227/427 (53%), Gaps = 9/427 (2%) Query: 32 SAFNHHAAGRLEAAEEDYRLILAMEEQYAPAQHYLGVLLHQCGRHEEGLALMHEAARTTP 91 SA H AG+L+ A + Y +L ++ +A A HY GVLLHQ G+ +A + +A + P Sbjct: 21 SAIQAHRAGKLDQAAQAYAQLLEVQPGHAQALHYHGVLLHQQGKSAAAVAAISQALQLAP 80 Query: 92 PDADWCNDLGNVLFACGRFDQAELAYGQALTLRSDDAQLWTNLGATRRAQGQHQAAIAAC 151 D CN+LGNV CGR AE Y AL L+ A NL A AQ +H+ A Sbjct: 81 AHPDACNNLGNVHRECGRLSDAEQCYRNALALQPAHADALANLAAVLEAQRRHEEAFLTY 140 Query: 152 EQALATAPHSLAALHQLAEI---HAHLGDRMQSSRYQCL--AFVLPPHEGKSRELLAISF 206 L T P S + L +A + +Q S CL A L +RE L Sbjct: 141 AALLHTYPESAHGHYLLGLFLRNNAQDAEHLQQS-VGCLQQACTLLSDHLPAREALGTGL 199 Query: 207 YFLGRVEEAAEVCRQWLREEPGHPIASHMHAAYAGLPSHSVPRDYIVRR-FDEYADHFDS 265 Y LG +A +V R WL +PG+ +A+HM AA G + D VR FD +AD FD Sbjct: 200 YLLGEHVQAQQVYRDWLARDPGNAVAAHMLAACGGTVAPPRASDTYVRELFDGFADSFDE 259 Query: 266 NLVSHLDYRGPEVLGMLLNAFLSEITPSM-VLDAGCGTGLCAPVLAPYALALEGVDLSPN 324 LV +LDYR P + L A L ++ +LDAGCGTGLCAP+L PYA L GVDLSP Sbjct: 260 QLVCNLDYRAPHCILKALQARLHAPAATLDILDAGCGTGLCAPLLRPYASHLAGVDLSPG 319 Query: 325 MLRHAAQHPQYTALEQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSLQPQG 384 M+ A Y ALE A++ ++ AHP R+ +I + D L+Y G L AA +L+P G Sbjct: 320 MVAKARARGGYDALEVAELTAYLQAHPQRWDVIGSADTLVYFGALHPVLTAAAAALRPGG 379 Query: 385 HLIFTVELAGEEHAAPYTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQQAVP 444 ++FTVE A + L SGR++H ++++E L AGL ++ ++ + LR E Q V Sbjct: 380 VIVFTVE-ALDAAGDVVRLDASGRYQHSQAHIEAALLGAGLRLIDLQADVLRSERGQPVH 438 Query: 445 GLVVLAR 451 G VV AR Sbjct: 439 GWVVTAR 445 >ref|ZP_06705397.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gb|EFF43064.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 443 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 171/431 (39%), Positives = 222/431 (51%), Gaps = 9/431 (2%) Query: 28 ESFTSAFNHHAAGRLEAAEEDYRLILAMEEQYAPAQHYLGVLLHQCGRHEEGLALMHEAA 87 E+ A H G+LE A + Y +L + +A A HY G+LLHQ G + +A + A Sbjct: 10 EALQQAIAAHRRGQLEHAAQLYTQLLDDQPGHADALHYQGILLHQRGNSDAAVASITRAL 69 Query: 88 RTTPPDADWCNDLGNVLFACGRFDQAELAYGQALTLRSDDAQLWTNLGATRRAQGQHQAA 147 P D CN+LGNV CGR AE Y +AL L A NL A AQ + + A Sbjct: 70 TLAPAQPDACNNLGNVHRECGRLRDAEHCYRRALALAPAHADALANLAAVLEAQRRGEEA 129 Query: 148 IAACEQALATAPHSLAALHQLAEI---HAHLGDRMQSSRYQCL--AFVLPPHEGKSRELL 202 L T P S A + L +A + + +Q S QCL A L P +RE L Sbjct: 130 FVTYAALLHTYPQSAHAHYLLGLFLRNNAQVAEHLQQS-VQCLQQACTLAPDNLHAREAL 188 Query: 203 AISFYFLGRVEEAAEVCRQWLREEPGHPIASHMHAAYAGL-PSHSVPRDYIVRRFDEYAD 261 Y LG +A V R WL EPG+ +A+HM AA G P Y+ FD +AD Sbjct: 189 GTGLYLLGEQAQAQTVYRDWLTREPGNAVATHMLAACGGAEPPPRAGDTYVRELFDGFAD 248 Query: 262 HFDSNLVSHLDYRGPEVLGMLLNAFLSEITPSM-VLDAGCGTGLCAPVLAPYALALEGVD 320 FD L+ HL+YR P+ L L A L+ + +LDAGCGTGLCAP+ PYA L GVD Sbjct: 249 SFDEQLLHHLEYRAPQRLTEALAACLAPPHAGLRMLDAGCGTGLCAPLWRPYARELVGVD 308 Query: 321 LSPNMLRHAAQHPQYTALEQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSL 380 LSP M+ A Q Y LE A++ ++ AR+ +I + D L+Y G L AAA +L Sbjct: 309 LSPGMVAKARQRGGYDRLEVAELTAYLQLQNARWDVIGSADTLVYFGVLQPVLAAAAGAL 368 Query: 381 QPQGHLIFTVELAGEEHAAPYTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQ 440 P G L FTVE A EE + L SGR+RH ++V LQ AGL+ + + + LR E Sbjct: 369 TPGGVLGFTVE-ALEERSDRVELDASGRYRHSHAHVRAALQGAGLQPIALELDVLRSERG 427 Query: 441 QAVPGLVVLAR 451 Q V G VV AR Sbjct: 428 QPVHGWVVTAR 438