BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3897.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776630.1| hypothetical protein Hsero_3241 [Herbaspiril...   234   4e-60
ref|YP_001352617.1| hypothetical protein mma_0927 [Janthinobacte...   185   2e-45
ref|YP_586813.1| thiosulfate:quinone oxidoreductase (TQO) small ...   180   6e-44
ref|ZP_08209679.1| hypothetical protein Y88_0108 [Novosphingobiu...   176   8e-43
ref|YP_001682384.1| DoxX family protein [Caulobacter sp. K31] >g...   172   2e-41

>ref|YP_003776630.1| hypothetical protein Hsero_3241 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64722.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  234 bits (596), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 136/156 (87%), Positives = 148/156 (94%)

Query: 1   MNQPATLPADVQPSPSLWSRAADLATRVISDNVLTLVARVAIAAIFFLSGRTKVSGFLDI 60
           MNQP +LPA + PSP+LW+RAADLATR+ISD++L LVARVA+AAIFFLSGRTKVSGFLDI
Sbjct: 1   MNQPTSLPATITPSPTLWNRAADLATRLISDSLLALVARVAVAAIFFLSGRTKVSGFLDI 60

Query: 61  KDSTYVLFQEEYHLPLVPPDLAAHLATYAEHFFPLLLILGLCTRGAALALLGMTTVIEIF 120
           KDSTY+LFQEEY LPL+PP+LAAHLATYAEHFFPLLLILGL TRGAALALLGMT VIEIF
Sbjct: 61  KDSTYILFQEEYRLPLLPPELAAHLATYAEHFFPLLLILGLFTRGAALALLGMTAVIEIF 120

Query: 121 VYPDAWPTHLSWAGLLLLLIARGGGAWSLDRRLGLR 156
           VYPDAWPTHLSWAGLLLLL+ARGGGAWSLDRR GLR
Sbjct: 121 VYPDAWPTHLSWAGLLLLLVARGGGAWSLDRRFGLR 156


>ref|YP_001352617.1| hypothetical protein mma_0927 [Janthinobacterium sp. Marseille]
 gb|ABR91395.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 156

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/139 (66%), Positives = 110/139 (79%)

Query: 18  WSRAADLATRVISDNVLTLVARVAIAAIFFLSGRTKVSGFLDIKDSTYVLFQEEYHLPLV 77
           W+  AD   R+++ + L LV R  IA+IFFLSGRTKV+G L + DSTY LF  +Y LPLV
Sbjct: 18  WNTCADFLNRLLTHSFLALVMRFGIASIFFLSGRTKVTGILTLTDSTYSLFSTDYKLPLV 77

Query: 78  PPDLAAHLATYAEHFFPLLLILGLCTRGAALALLGMTTVIEIFVYPDAWPTHLSWAGLLL 137
           PPD+AAHL TY+EH FP+LL+ GL TR AA AL GMT VIEIFVYPDAWPTHLSWAGLLL
Sbjct: 78  PPDIAAHLGTYSEHLFPILLVFGLFTRFAAFALFGMTAVIEIFVYPDAWPTHLSWAGLLL 137

Query: 138 LLIARGGGAWSLDRRLGLR 156
            LIARGGG+ SLD +LG++
Sbjct: 138 YLIARGGGSVSLDHKLGIK 156


>ref|YP_586813.1| thiosulfate:quinone oxidoreductase (TQO) small subunit(DoxD domain)
           [Cupriavidus metallidurans CH34]
 gb|ABF11544.1| thiosulphate:quinone oxidoreductase (TQO) small subunit(DoxD
           domain) [Cupriavidus metallidurans CH34]
          Length = 156

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/146 (67%), Positives = 121/146 (82%)

Query: 11  VQPSPSLWSRAADLATRVISDNVLTLVARVAIAAIFFLSGRTKVSGFLDIKDSTYVLFQE 70
           V+   +LWS     A+R+ISD+ L L+AR+AIA++FFLSGRTKV+G L IKDSTY LF++
Sbjct: 11  VRADTTLWSNLTTRASRLISDSFLALLARLAIASVFFLSGRTKVTGLLTIKDSTYSLFEQ 70

Query: 71  EYHLPLVPPDLAAHLATYAEHFFPLLLILGLCTRGAALALLGMTTVIEIFVYPDAWPTHL 130
           EY+LPL+PP+LAAHLA YAEH FP+LL+LGL TR +A ALLGMT VIEIFVYPDAWPTHL
Sbjct: 71  EYNLPLIPPELAAHLAAYAEHLFPVLLVLGLFTRFSAFALLGMTLVIEIFVYPDAWPTHL 130

Query: 131 SWAGLLLLLIARGGGAWSLDRRLGLR 156
           +WA L L LI RG GA+SLDRR G++
Sbjct: 131 TWAALQLFLIGRGAGAFSLDRRFGIK 156


>ref|ZP_08209679.1| hypothetical protein Y88_0108 [Novosphingobium nitrogenifigens DSM
           19370]
 gb|EGD58056.1| hypothetical protein Y88_0108 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 148

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 94/138 (68%), Positives = 114/138 (82%)

Query: 17  LWSRAADLATRVISDNVLTLVARVAIAAIFFLSGRTKVSGFLDIKDSTYVLFQEEYHLPL 76
           L+ RA  LA R++  +VL LVAR+ IA+IFFLSGRTKVSG L I DS Y LF+ +Y LP 
Sbjct: 7   LYRRATGLAERLLPASVLLLVARLGIASIFFLSGRTKVSGLLTITDSAYYLFETDYRLPF 66

Query: 77  VPPDLAAHLATYAEHFFPLLLILGLCTRGAALALLGMTTVIEIFVYPDAWPTHLSWAGLL 136
           +PP +AAH+ATY+EH FP+LL+LGL TR AAL++LGMTTVIE+FVYPDAWPTHLSWAGLL
Sbjct: 67  LPPHVAAHIATYSEHLFPILLVLGLGTRFAALSILGMTTVIEVFVYPDAWPTHLSWAGLL 126

Query: 137 LLLIARGGGAWSLDRRLG 154
           L LIA+GGG ++LDR  G
Sbjct: 127 LPLIAQGGGTFALDRFFG 144


>ref|YP_001682384.1| DoxX family protein [Caulobacter sp. K31]
 gb|ABZ69886.1| DoxX family protein [Caulobacter sp. K31]
          Length = 154

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/150 (62%), Positives = 114/150 (76%)

Query: 7   LPADVQPSPSLWSRAADLATRVISDNVLTLVARVAIAAIFFLSGRTKVSGFLDIKDSTYV 66
           +PA  +P    +   A  A R + D VLTLVAR+ IA++FFLSGRTKV G L I D TY 
Sbjct: 5   VPAASRPLSRPFDLLAAAAHRTLPDGVLTLVARLGIASVFFLSGRTKVDGILHITDGTYS 64

Query: 67  LFQEEYHLPLVPPDLAAHLATYAEHFFPLLLILGLCTRGAALALLGMTTVIEIFVYPDAW 126
           LF ++Y LPL+P DLAAHLATY+EH F +LL+LGL TR +ALA LGMT VIE+FVYPDAW
Sbjct: 65  LFADDYALPLIPSDLAAHLATYSEHLFSILLVLGLFTRLSALAFLGMTLVIEVFVYPDAW 124

Query: 127 PTHLSWAGLLLLLIARGGGAWSLDRRLGLR 156
            THLSWA +LL L+A+GGG WSLDR +G++
Sbjct: 125 STHLSWAAILLFLVAKGGGKWSLDRVMGIK 154