BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3895.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776629.1| hypothetical protein Hsero_3240 [Herbaspiril... 372 e-101 ref|YP_001352616.1| hypothetical protein mma_0926 [Janthinobacte... 201 1e-49 ref|ZP_08406908.1| hypothetical protein HGR_13579 [Hylemonella g... 180 2e-43 ref|YP_586814.1| Thioredoxin-like_fold protein [Cupriavidus meta... 172 3e-41 ref|YP_001749058.1| hypothetical protein PputW619_2189 [Pseudomo... 156 2e-36 >ref|YP_003776629.1| hypothetical protein Hsero_3240 [Herbaspirillum seropedicae SmR1] gb|ADJ64721.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 190/251 (75%), Positives = 211/251 (84%) Query: 1 MNAPDHRYYASFLQALLNGQSDDPGVAALLAQPAFAIYRNTVFKGCVDALLANYPAVHRL 60 MNAP RYY +FLQA+L G S+D VAALLAQPAFA+YRNT+FKGCVDAL+ANYP V RL Sbjct: 1 MNAPATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVRRL 60 Query: 61 VGSPWMESAAQAFAREHLPQEASLICYGAGFADFLATLEAARELPYLPGVATLDRCWTEA 120 VGS WMESAA FAR HLP++ASLI YG GF++FL T+EA RELPYLPGVA LDRCWTE+ Sbjct: 61 VGSAWMESAALQFARHHLPRQASLIAYGEGFSEFLCTVEAVRELPYLPGVAALDRCWTES 120 Query: 121 HLAADDPLLDVSALHTALAAGQDIRLVPHAASRWHHDPQHPVYTIWSINRSDADDTEIAP 180 HLAAD P+L V+ALH AL AGQD+ LVPHA+SRWHHD QHPVYTIWS NRS+ E+AP Sbjct: 121 HLAADQPMLAVAALHIALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANRSEDGQAELAP 180 Query: 181 EWQGEGALLTRPHGQVQWQPLSAGASGFLDACRDGCGIASAAGQALAREPGLEIGTMLGQ 240 EW+GEGALLTRPH QVQWQPLS GA FLDACRDG IA AAGQAL EP L+I TMLGQ Sbjct: 181 EWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGFSIARAAGQALEHEPDLDIATMLGQ 240 Query: 241 LIQADAFTSFH 251 LIQADAFTSF+ Sbjct: 241 LIQADAFTSFY 251 >ref|YP_001352616.1| hypothetical protein mma_0926 [Janthinobacterium sp. Marseille] gb|ABR91394.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 257 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 116/254 (45%), Positives = 144/254 (56%), Gaps = 10/254 (3%) Query: 1 MNAPDHRYYASFLQALLNGQSDDPGVAALLAQPAFAIYRNTVFKGCVDALLANYPAVHRL 60 MN R+ F+QA+ D +AAL+ QP FAIYRNT+ KGC+DAL ANYP V RL Sbjct: 1 MNNTLERFQDDFVQAIYGDLGADSSIAALVVQPGFAIYRNTIIKGCIDALQANYPTVERL 60 Query: 61 VGSPWMESAAQAFAREHLPQEASLICYGAGFADFLATLEAARELPYLPGVATLDRCWTEA 120 VG+ W +AA + RE P SL+ YG FADFL E A+ELPYL VA LDR W ++ Sbjct: 61 VGTEWFRAAAAIYVRETRPTNVSLMEYGETFADFLVQFEPAKELPYLANVARLDRFWVKS 120 Query: 121 HLAADDPLLDVSALHT--ALAAGQDIRLVPHAASRWHHDPQHPVYTIWSINRSD---ADD 175 H A D+ +D SAL GQ + L ++ W P+YTIWSINR AD+ Sbjct: 121 HTALDEESIDPSALGKLPPEELGQAV-LRTLVSAHWIWFDTQPIYTIWSINRQGETLADN 179 Query: 176 TEIAPEWQGEGALLTRPHGQVQWQPLSAGASGFLDACRDGCGIASAAGQALAREPGLEIG 235 EW G+GALL R G V W+ L GA FLDAC G + AA A+ +P L+I Sbjct: 180 I----EWIGQGALLVRDDGVVTWRSLEQGACAFLDACAIGMPLEQAANAAIEAQPSLDIA 235 Query: 236 TMLGQLIQADAFTS 249 ML L+ A F S Sbjct: 236 RMLSDLLTAGVFAS 249 >ref|ZP_08406908.1| hypothetical protein HGR_13579 [Hylemonella gracilis ATCC 19624] gb|EGI75951.1| hypothetical protein HGR_13579 [Hylemonella gracilis ATCC 19624] Length = 272 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 119/250 (47%), Positives = 142/250 (56%), Gaps = 9/250 (3%) Query: 7 RYYASFLQALLNGQS---DDPGVAALLAQPAFAIYRNTVFKGCVDALLANYPAVHRLVGS 63 R+ FL AL S V+ L QP FA+YRNT+ KGC+DAL ANYP V RLVGS Sbjct: 21 RFQNDFLLALYQPDSVRVAPTSVSKLATQPGFAVYRNTIIKGCIDALEANYPTVARLVGS 80 Query: 64 PWMESAAQAFAREHLPQEASLICYGAGFADFLATLEAARELPYLPGVATLDRCWTEAHLA 123 W +AA + R P L+ YG FA+FLA AR LPYLPGVA LDR WTEAH+A Sbjct: 81 AWFRAAALPYVRATPPSSVMLMEYGGDFAEFLAGFTPARALPYLPGVARLDRLWTEAHVA 140 Query: 124 ADDPLLDVSALHT--ALAAGQDIRLVPHAASRWHHDPQHPVYTIWSINRSDADDTEIAPE 181 AD P LD L A GQ +RL PH A+RW P PVY +W NR + + P Sbjct: 141 ADTPALDADTLAALPAETLGQ-LRLRPHPATRWAWHPDQPVYALWCANREERALAQDLP- 198 Query: 182 WQGEGALLTRP--HGQVQWQPLSAGASGFLDACRDGCGIASAAGQALAREPGLEIGTMLG 239 W +GALLTR G V+WQ S G FLDAC +A AA AL +P L++ +L Sbjct: 199 WTPDGALLTRGAYDGSVRWQAASLGVCAFLDACSADLTLAGAAQAALQAQPNLDLTRVLA 258 Query: 240 QLIQADAFTS 249 LI ADA + Sbjct: 259 DLITADALVA 268 >ref|YP_586814.1| Thioredoxin-like_fold protein [Cupriavidus metallidurans CH34] gb|ABF11545.1| Thioredoxin-like_fold protein [Cupriavidus metallidurans CH34] Length = 258 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 121/258 (46%), Positives = 145/258 (56%), Gaps = 12/258 (4%) Query: 1 MNAPDHRYYASFLQALLNGQSDDPG---VAALLAQPAFAIYRNTVFKGCVDALLANYPAV 57 MNA H + FL+A+L P + L QP F +YRNTV KGCVDAL AN+P V Sbjct: 1 MNANGHHFQDDFLRAILAPPGIAPPWTPITPLTQQPGFKVYRNTVLKGCVDALAANFPTV 60 Query: 58 HRLVGSPWMESAAQAFAREHLPQEASLICYGAGFADFLATLEAARELPYLPGVATLDRCW 117 RLVG W +AA P+ LI YG FADFL+ E A LPYLP VA LDR W Sbjct: 61 LRLVGEDWFRAAALIHVCAEPPRSVCLIEYGQEFADFLSGFEPAAALPYLPDVARLDRLW 120 Query: 118 TEAHLAADDPLLDVSALHTALAAGQDI---RLVPHAASRWHHDPQHPVYTIWSINRSDAD 174 TE+HLAADD LD +AL T G D+ L P A+ RW + P +TIW NR D Sbjct: 121 TESHLAADDEALDAAALAT--LNGGDLLGAALRPCASVRWRWF-ETPAFTIWRANREQRD 177 Query: 175 -DTEIAPEWQGEGALLTRPHGQVQWQPLSAGASGFLDACRDGCGIASAAGQALAREPGLE 233 D E+ EW GEGALLTRP G V WQ + G FLDAC G + A+ A+ EPG++ Sbjct: 178 LDGEL--EWIGEGALLTRPEGAVVWQHATQGMCAFLDACAAGANLQIASQSAMVAEPGID 235 Query: 234 IGTMLGQLIQADAFTSFH 251 I +L L+ A F H Sbjct: 236 IARLLATLLGARVFADIH 253 >ref|YP_001749058.1| hypothetical protein PputW619_2189 [Pseudomonas putida W619] gb|ACA72689.1| conserved hypothetical protein [Pseudomonas putida W619] Length = 251 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 24 PGVAALLAQPAFAIYRNTVFKGCVDALLANYPAVHRLVGSPWMESAAQAFAREHLPQEAS 83 P + L QPAFA+YRNTV GCVDAL AN+P+V LVG+ WM+ AA A+A+ P +A Sbjct: 22 PLLQNLTCQPAFAVYRNTVMAGCVDALRANFPSVETLVGADWMQQAAAAYAKHTPPDDAR 81 Query: 84 LICYGAGFADFLATLEAARELPYLPGVATLDRCWTEAHLAADDPLL---DVSALHTALAA 140 LI YGA FA FL +A+ LPYL VA LD W E A + P L D++ + + Sbjct: 82 LIRYGATFAAFLQDSQASHGLPYLADVARLDWHWCEVFSAIEQPCLALADLAGMTASDLG 141 Query: 141 GQDIRLVPHAASRWHHDPQHPVYTIWSINRSDADDTEIAPEWQGEGALLTRPHGQVQWQP 200 G +R P RW HP ++W +R + P W EGALL+ V QP Sbjct: 142 GSHLR--PRQNVRWQWFDAHPALSLWRCSREGLPWPQSQP-WVAEGALLSADQHGVNHQP 198 Query: 201 LSAGASGFLDACRDGCGIASAAGQALAREPGLEIGTMLGQLIQADAF 247 L AG FLDAC G + SA+ AL R+P L+ ++LG+L+QA F Sbjct: 199 LEAGGCMFLDACAAGHSLESASQLALQRQPDLDFTSLLGRLMQARVF 245