BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3893.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776627.1| integral membrane protein [Herbaspirillum se...   139   1e-31
ref|ZP_08406911.1| integral membrane protein [Hylemonella gracil...   103   6e-21
ref|YP_001352614.1| hypothetical protein mma_0924 [Janthinobacte...   100   5e-20
ref|YP_002948133.1| hypothetical protein Vapar_6304 [Variovorax ...    96   3e-18
ref|YP_586816.1| hypothetical protein Rmet_4685 [Cupriavidus met...    86   2e-15

>ref|YP_003776627.1| integral membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64719.1| integral membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 92

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/89 (95%), Positives = 86/89 (96%)

Query: 3  HFVATAALTLATLASGVAMAQDKQPMNKTAVEKCYGVSMAGQNDCKAGEGTTCAGTAKMD 62
          H VATAALTLA+LASGVAMAQDKQ MNK AVEKCYGVSMAGQNDCKAGEGTTCAGTAKMD
Sbjct: 4  HLVATAALTLASLASGVAMAQDKQSMNKPAVEKCYGVSMAGQNDCKAGEGTTCAGTAKMD 63

Query: 63 YQGNAWKNVPAGTCTSIKTPRGMGSLKPV 91
          YQGNAWKNVPAGTCTSIKTPRGMGSLKPV
Sbjct: 64 YQGNAWKNVPAGTCTSIKTPRGMGSLKPV 92


>ref|ZP_08406911.1| integral membrane protein [Hylemonella gracilis ATCC 19624]
 gb|EGI75954.1| integral membrane protein [Hylemonella gracilis ATCC 19624]
          Length = 96

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/88 (77%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query: 5  VATAALTLATLASGVAMAQDKQPMNK--TAVEKCYGVSMAGQNDCKAGEGTTCAGTAKMD 62
          +AT A++L+ L +GVA+AQ  Q   K  TAVEKCYGVS AGQNDCKAG GTTCAGTAKMD
Sbjct: 6  LATVAVSLSALVAGVALAQSSQMPEKKTTAVEKCYGVSKAGQNDCKAGAGTTCAGTAKMD 65

Query: 63 YQGNAWKNVPAGTCTSIKTPRGMGSLKP 90
          YQGNAWKNVPAGTCTSIKTP+GMGSL P
Sbjct: 66 YQGNAWKNVPAGTCTSIKTPKGMGSLTP 93


>ref|YP_001352614.1| hypothetical protein mma_0924 [Janthinobacterium sp. Marseille]
 gb|ABR91697.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 92

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/77 (76%), Positives = 67/77 (87%)

Query: 15 LASGVAMAQDKQPMNKTAVEKCYGVSMAGQNDCKAGEGTTCAGTAKMDYQGNAWKNVPAG 74
          + SG AMAQDK P  KTAVEKCYGVS+AG+NDCKAG GTTCAGT+  DYQGNAWKNVPAG
Sbjct: 16 IVSGTAMAQDKTPATKTAVEKCYGVSLAGKNDCKAGAGTTCAGTSVTDYQGNAWKNVPAG 75

Query: 75 TCTSIKTPRGMGSLKPV 91
          TCTSI+TP+G GSL+ +
Sbjct: 76 TCTSIQTPKGHGSLEAI 92


>ref|YP_002948133.1| hypothetical protein Vapar_6304 [Variovorax paradoxus S110]
 gb|ACS22867.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 95

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/72 (75%), Positives = 64/72 (88%), Gaps = 1/72 (1%)

Query: 21 MAQDKQPMNK-TAVEKCYGVSMAGQNDCKAGEGTTCAGTAKMDYQGNAWKNVPAGTCTSI 79
          MAQDK   +K  A+EKCYGVSMAG+NDC AG GTTCAGT+K+DYQGN+WKNVPAGTCT+I
Sbjct: 22 MAQDKPMADKMAAMEKCYGVSMAGKNDCAAGPGTTCAGTSKVDYQGNSWKNVPAGTCTTI 81

Query: 80 KTPRGMGSLKPV 91
          KTP+G+GSL P+
Sbjct: 82 KTPKGIGSLMPI 93


>ref|YP_586816.1| hypothetical protein Rmet_4685 [Cupriavidus metallidurans CH34]
 gb|ABF11547.1| conserved hypothetical protein (secreted) [Cupriavidus
          metallidurans CH34]
          Length = 94

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/94 (63%), Positives = 73/94 (77%), Gaps = 3/94 (3%)

Query: 1  MNHFVATAALTLATLASGVAMAQDK--QP-MNKTAVEKCYGVSMAGQNDCKAGEGTTCAG 57
          MN     AA+TLA L SGVA+AQ+   QP  +K A+EKCYGV+MAGQNDCKAG GTTCAG
Sbjct: 1  MNTIKLAAAVTLAALTSGVALAQNSTMQPSKDKPAMEKCYGVAMAGQNDCKAGAGTTCAG 60

Query: 58 TAKMDYQGNAWKNVPAGTCTSIKTPRGMGSLKPV 91
          T K DY+ + +K+VP GTC +IKTP GMG+LKP+
Sbjct: 61 TQKTDYERDHFKSVPVGTCATIKTPHGMGTLKPM 94