BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3892.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776626.1| hypothetical protein Hsero_3237 [Herbaspiril... 243 1e-62 ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xe... 139 4e-31 ref|YP_001266377.1| hypothetical protein Pput_1032 [Pseudomonas ... 137 1e-30 gb|ADR58727.1| Hypothetical protein, conserved [Pseudomonas puti... 131 7e-29 ref|NP_743156.1| hypothetical protein PP_0995 [Pseudomonas putid... 130 2e-28 >ref|YP_003776626.1| hypothetical protein Hsero_3237 [Herbaspirillum seropedicae SmR1] gb|ADJ64718.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 187/213 (87%), Positives = 196/213 (92%) Query: 9 MLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRELLQQPLFW 68 MLA GTG+ GP QRSL RN AARMAVALA+GLMGAALLLA+LYGVRSDLR LLQQPLFW Sbjct: 1 MLAAGTGDSSGPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW 60 Query: 69 MKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLALAPPSQRLD 128 MKVSFPLAAL AGQLAA+RLA PGMR+GL PAA LLLPP +LWLAGG WLALAPPSQRL+ Sbjct: 61 MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE 120 Query: 129 LLLGSSWEVCSANVALLSLPTLASMLWFLRGFAPTRLRAAGAVAGLVAGAQGVLVYSLYC 188 LLLGSSWEVCSANVALLSLPTLA+MLWFLRG APT+LRAAGA AGLVAGAQGVLVYSLYC Sbjct: 121 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGAAAGLVAGAQGVLVYSLYC 180 Query: 189 VEMAPPFWGVWYVLGVALPTGAGALCGPWLLRW 221 VEMAPPFWGVWYVLGVALPT AGA CGPWLLRW Sbjct: 181 VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 213 >ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xenovorans LB400] gb|ABE30788.1| Putative transmembrane protein DUF1109 [Burkholderia xenovorans LB400] Length = 213 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 101/221 (45%), Positives = 133/221 (60%), Gaps = 8/221 (3%) Query: 1 MKTMELVNMLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRE 60 MKT + +++LATG PV R + R VA+ G GA L++A + G+R DL E Sbjct: 1 MKTDDFISLLATGVA----PVDRYAL---TKRFGVAVLAGAAGATLIMATVLGIRRDLAE 53 Query: 61 LLQQPLFWMKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLAL 120 + P+FW K++ PL ++ ++RLA PG+R G + P A +WLAG L Sbjct: 54 VALTPIFWAKIALPLCVMIGALWMSTRLARPGVRTG-GSGWLIAAPVAAVWLAGAYVLMA 112 Query: 121 APPSQRLDLLLGSSWEVCSANVALLSLPTLASMLWFLRGFAPTRLRAAGAVAGLVAGAQG 180 AP RL L+LG +W VC N+A+LS+P + W L+G APTRL GAV GL+AG+ Sbjct: 113 APGDARLALVLGKTWRVCPFNIAMLSVPGFIAAFWALKGLAPTRLALTGAVGGLLAGSTA 172 Query: 181 VLVYSLYCVEMAPPFWGVWYVLGVALPTGAGALCGPWLLRW 221 L Y L+C EM PFWGVWYVLG+ LP AGAL GP LLRW Sbjct: 173 TLAYCLHCPEMGIPFWGVWYVLGMLLPAIAGALLGPRLLRW 213 >ref|YP_001266377.1| hypothetical protein Pput_1032 [Pseudomonas putida F1] gb|ABQ77193.1| protein of unknown function DUF1109 [Pseudomonas putida F1] Length = 213 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 8/221 (3%) Query: 1 MKTMELVNMLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRE 60 MKT +L+ +LA G G PV R V RMAVA+ GL A LL LYGVRSD+ E Sbjct: 1 MKTDDLIALLAAGEG----PVPR---HAVCRRMAVAVLGGLTAALLLTITLYGVRSDITE 53 Query: 61 LLQQPLFWMKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLAL 120 + Q PLFW KV+FP + L G SRLA PG + G A L LP L+W +A Sbjct: 54 VAQTPLFWGKVAFPTSLALIGLWLTSRLARPGGK-GAAGWKMLGLPLLLVWCGAAVSIAG 112 Query: 121 APPSQRLDLLLGSSWEVCSANVALLSLPTLASMLWFLRGFAPTRLRAAGAVAGLVAGAQG 180 AP R +LL G +W C+ N+ LLS+P ++ W L+G APTRLR AGA GL+AG+ Sbjct: 113 APVEARAELLFGRTWRTCALNITLLSVPAFVTVFWALKGLAPTRLRQAGAAGGLLAGSTA 172 Query: 181 VLVYSLYCVEMAPPFWGVWYVLGVALPTGAGALCGPWLLRW 221 + Y L+C EM PFWGVWYVLG+ LPT GA GP +LRW Sbjct: 173 TVAYCLHCPEMGVPFWGVWYVLGMLLPTVFGAWWGPRMLRW 213 >gb|ADR58727.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 213 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 109/221 (49%), Positives = 136/221 (61%), Gaps = 8/221 (3%) Query: 1 MKTMELVNMLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRE 60 MKT +L+ +LA G G PV R V+ RMAVA+ GL A LL LYGVRSD+ E Sbjct: 1 MKTDDLIALLAAGEG----PVPR---HAVSRRMAVAVLGGLTAALLLTITLYGVRSDITE 53 Query: 61 LLQQPLFWMKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLAL 120 + Q PLFW KV+FP + L G SRLA PG + G A L LP L+W +A Sbjct: 54 VAQTPLFWGKVAFPTSLALIGLWLTSRLARPGGK-GAAGWKMLGLPLLLVWCGAAVSIAG 112 Query: 121 APPSQRLDLLLGSSWEVCSANVALLSLPTLASMLWFLRGFAPTRLRAAGAVAGLVAGAQG 180 AP R +LL G +W C+ N+ALLS+P ++ W L+G APTRLR AGA GL+AG+ Sbjct: 113 APVDARAELLFGRTWRTCALNIALLSVPAFVTVFWALKGLAPTRLRLAGAAGGLLAGSSA 172 Query: 181 VLVYSLYCVEMAPPFWGVWYVLGVALPTGAGALCGPWLLRW 221 + Y L+C EM PFWGVWYVLG+ +PT GA GP +LRW Sbjct: 173 TVAYCLHCPEMGVPFWGVWYVLGMLVPTVFGAWWGPRMLRW 213 >ref|NP_743156.1| hypothetical protein PP_0995 [Pseudomonas putida KT2440] gb|AAN66620.1|AE016289_8 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 213 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 110/221 (49%), Positives = 134/221 (60%), Gaps = 8/221 (3%) Query: 1 MKTMELVNMLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRE 60 MKT +L+ +LA G G PV R V RMAVA GL A LL LYGVRSD+ E Sbjct: 1 MKTDDLIALLAAGEG----PVPR---HAVGRRMAVAALGGLTAALLLTITLYGVRSDITE 53 Query: 61 LLQQPLFWMKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLAL 120 + Q PLFW KV+FP + L G SRLA PG + G A L LP L+W +A Sbjct: 54 VAQTPLFWGKVAFPTSLALIGLWLTSRLARPGGK-GAAGWKMLGLPLLLVWCGAAVSIAG 112 Query: 121 APPSQRLDLLLGSSWEVCSANVALLSLPTLASMLWFLRGFAPTRLRAAGAVAGLVAGAQG 180 AP R DLL G +W C+ N+ALLS+P ++ W L+G APTRLR AGA GL+AG+ Sbjct: 113 APVDARADLLFGRTWRTCALNIALLSVPAFVTVFWALKGLAPTRLRLAGAAGGLLAGSSA 172 Query: 181 VLVYSLYCVEMAPPFWGVWYVLGVALPTGAGALCGPWLLRW 221 + Y L+C EM PFWGVWYVLG+ +PT GA GP +LRW Sbjct: 173 TVAYCLHCPEMGVPFWGVWYVLGMLVPTVLGAWWGPRMLRW 213