BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3891.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776625.1| RNA polymerase sigma-E factor protein [Herba... 355 3e-96 ref|ZP_03263765.1| RNA polymerase, sigma-24 subunit, ECF subfami... 258 3e-67 ref|YP_001888873.1| RNA polymerase sigma factor [Burkholderia ph... 257 7e-67 ref|YP_001861154.1| ECF subfamily RNA polymerase sigma-24 factor... 240 9e-62 ref|YP_001888862.1| RNA polymerase sigma factor [Burkholderia ph... 238 4e-61 >ref|YP_003776625.1| RNA polymerase sigma-E factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ64717.1| RNA polymerase sigma-E factor protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 355 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 194/209 (92%), Positives = 201/209 (96%) Query: 1 MTESPFLLATGGPALPDEVAGRPGKPSHPAEERLRMLLLAGLDGDAVAYRQFLAELSGRL 60 MTESP+LLATGGP LPD++AG PGKP+HP EERLR LLLAGLDGDAVAYR FL+ELSGRL Sbjct: 1 MTESPYLLATGGPPLPDDLAGLPGKPAHPTEERLRTLLLAGLDGDAVAYRNFLSELSGRL 60 Query: 61 RAFLRKRLVHLQDDVEDVVQETLLAIHNARHTYRPDQPLTAWVHAIARYKLMDFLRARSR 120 RAFLRKRLVHLQDDVEDVVQETLLAIHNARHTYRPDQPLTAWVHAIARYKLMDFLRARSR Sbjct: 61 RAFLRKRLVHLQDDVEDVVQETLLAIHNARHTYRPDQPLTAWVHAIARYKLMDFLRARSR 120 Query: 121 REAFNDPLDEEHDLLTTCDDEPAQARRDVGALLEELPDKQRLPIVHVKLEGLSVAETAQL 180 R+AF DPL+EEHDLL CDDEPAQARRDVGALLEELPDKQRLPIVHVKLEGLSVAETAQL Sbjct: 121 RDAFLDPLEEEHDLLAICDDEPAQARRDVGALLEELPDKQRLPIVHVKLEGLSVAETAQL 180 Query: 181 TGMSESAVKVGIHRGLKALALKIREKLQA 209 TGMSESAVKVGIHRGLKALALKIREKLQA Sbjct: 181 TGMSESAVKVGIHRGLKALALKIREKLQA 209 >ref|ZP_03263765.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] gb|EEA04509.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] Length = 189 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 133/179 (74%), Positives = 151/179 (84%) Query: 26 PSHPAEERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLA 85 P P EERL+ L + GLDGDA AY+ FL +L+G LR FLRKRL +LQDDVED+VQE LLA Sbjct: 9 PVRPVEERLKALFVRGLDGDATAYQAFLGDLTGHLRGFLRKRLFYLQDDVEDLVQEILLA 68 Query: 86 IHNARHTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQA 145 +HN RHTYRPDQPLTAWVHAIARYKL DF RARSRREA N PLD+E + CD EPA+A Sbjct: 69 VHNGRHTYRPDQPLTAWVHAIARYKLTDFFRARSRREALNMPLDDELAIFANCDVEPAEA 128 Query: 146 RRDVGALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIR 204 RRD+ LLE+LPD+QRLPIVHVKLEGLSV ETA+LTG+SESAVKVG+HRGLKALALK + Sbjct: 129 RRDLSKLLEQLPDRQRLPIVHVKLEGLSVTETAKLTGLSESAVKVGVHRGLKALALKFQ 187 >ref|YP_001888873.1| RNA polymerase sigma factor [Burkholderia phytofirmans PsJN] gb|ACD19503.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phytofirmans PsJN] Length = 190 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 131/179 (73%), Positives = 155/179 (86%) Query: 26 PSHPAEERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLA 85 P+ P EERL+ L + GLDG+A AY+ FL++L+G LR FLRKRL +LQDDVED+VQE LLA Sbjct: 9 PASPVEERLKALFVRGLDGNAAAYQAFLSDLTGHLRGFLRKRLFYLQDDVEDLVQEILLA 68 Query: 86 IHNARHTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQA 145 +HN RHTYRPDQPLTAWVHAIARYKL DF RARSRREA + PLD+E ++ TCD EPA+A Sbjct: 69 VHNGRHTYRPDQPLTAWVHAIARYKLADFFRARSRREALHMPLDDELEIFATCDVEPAEA 128 Query: 146 RRDVGALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIR 204 RRD+ LLE+LPD+QRLPI+HVKLEGLSV ETA+LTG+SESAVKVG+HRGLKALALK + Sbjct: 129 RRDLSKLLEQLPDRQRLPILHVKLEGLSVTETAKLTGLSESAVKVGVHRGLKALALKFQ 187 >ref|YP_001861154.1| ECF subfamily RNA polymerase sigma-24 factor [Burkholderia phymatum STM815] gb|ACC74108.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phymatum STM815] Length = 182 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 126/175 (72%), Positives = 149/175 (85%) Query: 30 AEERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLAIHNA 89 AE RL+ L ++GLDGDA AYR FL L+ LR FLR+R+ +DDVED+VQE LLA+HNA Sbjct: 5 AESRLKALFVSGLDGDADAYRGFLQALTRHLRGFLRRRIPQYRDDVEDLVQEILLAVHNA 64 Query: 90 RHTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARRDV 149 RHTYRPD+PLTAW+HAIARYKLMDF R+R+RRE+ NDPLD+ DLL DDEPAQAR D+ Sbjct: 65 RHTYRPDEPLTAWLHAIARYKLMDFFRSRARRESLNDPLDDHADLLADTDDEPAQARHDI 124 Query: 150 GALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIR 204 G LL+ LPDKQRLPIVH+KLEGLSV ETA++TG+SESAVKVG+HRGLKALA +IR Sbjct: 125 GKLLDHLPDKQRLPIVHMKLEGLSVTETARITGLSESAVKVGVHRGLKALAARIR 179 >ref|YP_001888862.1| RNA polymerase sigma factor [Burkholderia phytofirmans PsJN] gb|ACD19492.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia phytofirmans PsJN] Length = 181 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 126/177 (71%), Positives = 147/177 (83%) Query: 28 HPAEERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLAIH 87 + AE+RL+ LL+AGL G+A YR FL+EL+ LR +LRKR+ L DDVED+VQE LLA+H Sbjct: 2 YSAEQRLKTLLVAGLAGNASDYRLFLSELTRHLRGYLRKRIPQLHDDVEDLVQEILLAVH 61 Query: 88 NARHTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARR 147 NARHTYRPD+PLTAWVHAIARYKLMDF R R+RRE+ ++PLDE D+ CDDEPA ARR Sbjct: 62 NARHTYRPDEPLTAWVHAIARYKLMDFFRTRARRESLHEPLDEHDDIFAECDDEPADARR 121 Query: 148 DVGALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIR 204 DVG LL LPDKQRL I+HVKL+GLSVAE AQLTG+SESAVKV IHRGLKALA +R Sbjct: 122 DVGKLLGHLPDKQRLSILHVKLQGLSVAEAAQLTGLSESAVKVSIHRGLKALAAHVR 178