BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3890.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776624.1| hypothetical protein Hsero_3235 [Herbaspiril... 274 8e-72 ref|ZP_06842026.1| protein of unknown function DUF1109 [Burkhold... 206 3e-51 ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xe... 201 4e-50 ref|ZP_08406913.1| hypothetical protein HGR_13604 [Hylemonella g... 199 2e-49 ref|YP_586818.1| hypothetical protein Rmet_4687 [Cupriavidus met... 196 1e-48 >ref|YP_003776624.1| hypothetical protein Hsero_3235 [Herbaspirillum seropedicae SmR1] gb|ADJ64716.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 274 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 182/200 (91%), Positives = 193/200 (96%) Query: 1 MKTDDLISMMASGVAPVDRRLPVKQMAQALVLGGLGSLLLMLKIYGLRPDLAVMLGVPLF 60 MKTDDLISMMASGV PVDRRLPVKQMAQAL+LGGLG+LLLMLKIYGLRPDL +MLGVPLF Sbjct: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 Query: 61 WIKLAFPTTLAVGAMLVLRRLVRPGLRVGANWAGIALPAMAVWLGGAAVLLSAPVAQQLP 120 WIKLAFPTTLAVGA+LVLRRL+RPGLRVG WAGIALP +AVW GGA VLLSAP+AQ+LP Sbjct: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLSGAVAGLLAGATATMVYCLHC 180 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRL+GA+AGLLAGATATMVYCLHC Sbjct: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 Query: 181 PEMGVPFWGIWYFLGILIPA 200 PEMGVPFWG+WYFLGILIPA Sbjct: 181 PEMGVPFWGVWYFLGILIPA 200 >ref|ZP_06842026.1| protein of unknown function DUF1109 [Burkholderia sp. Ch1-1] gb|EFG70251.1| protein of unknown function DUF1109 [Burkholderia sp. Ch1-1] Length = 213 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 120/213 (56%), Positives = 160/213 (75%) Query: 1 MKTDDLISMMASGVAPVDRRLPVKQMAQALVLGGLGSLLLMLKIYGLRPDLAVMLGVPLF 60 MKTDD IS++A+GVAPVDR K+ A++ G G+ L+M + G+R DLA + P+F Sbjct: 1 MKTDDFISLLATGVAPVDRYALTKRFGVAMLAGAAGATLIMALVLGIRRDLAQVAVTPIF 60 Query: 61 WIKLAFPTTLAVGAMLVLRRLVRPGLRVGANWAGIALPAMAVWLGGAAVLLSAPVAQQLP 120 W K+A P + +G++ + RL RPGLR G + IA P AVWL GA VL++AP +L Sbjct: 61 WAKIALPLCVMIGSLWMSTRLARPGLRTGGSGWLIAAPVAAVWLAGAYVLMAAPGDARLA 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLSGAVAGLLAGATATMVYCLHC 180 L++G +WR CPFNIA+LSIP F+ +FWA++G+APTRL L+GAV GLLAG+ AT+ YCLHC Sbjct: 121 LVLGKTWRVCPFNIAMLSIPGFVAVFWALKGLAPTRLVLTGAVGGLLAGSIATLAYCLHC 180 Query: 181 PEMGVPFWGIWYFLGILIPAVLGLLLGPRLLRW 213 PEMG+PFWG+WY LG+L+PA++G LLGPRLLRW Sbjct: 181 PEMGIPFWGVWYVLGMLLPAIVGALLGPRLLRW 213 >ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xenovorans LB400] gb|ABE30788.1| Putative transmembrane protein DUF1109 [Burkholderia xenovorans LB400] Length = 213 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 121/213 (56%), Positives = 159/213 (74%) Query: 1 MKTDDLISMMASGVAPVDRRLPVKQMAQALVLGGLGSLLLMLKIYGLRPDLAVMLGVPLF 60 MKTDD IS++A+GVAPVDR K+ A++ G G+ L+M + G+R DLA + P+F Sbjct: 1 MKTDDFISLLATGVAPVDRYALTKRFGVAVLAGAAGATLIMATVLGIRRDLAEVALTPIF 60 Query: 61 WIKLAFPTTLAVGAMLVLRRLVRPGLRVGANWAGIALPAMAVWLGGAAVLLSAPVAQQLP 120 W K+A P + +GA+ + RL RPG+R G + IA P AVWL GA VL++AP +L Sbjct: 61 WAKIALPLCVMIGALWMSTRLARPGVRTGGSGWLIAAPVAAVWLAGAYVLMAAPGDARLA 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLSGAVAGLLAGATATMVYCLHC 180 L++G +WR CPFNIA+LS+P FI FWA++G+APTRL L+GAV GLLAG+TAT+ YCLHC Sbjct: 121 LVLGKTWRVCPFNIAMLSVPGFIAAFWALKGLAPTRLALTGAVGGLLAGSTATLAYCLHC 180 Query: 181 PEMGVPFWGIWYFLGILIPAVLGLLLGPRLLRW 213 PEMG+PFWG+WY LG+L+PA+ G LLGPRLLRW Sbjct: 181 PEMGIPFWGVWYVLGMLLPAIAGALLGPRLLRW 213 >ref|ZP_08406913.1| hypothetical protein HGR_13604 [Hylemonella gracilis ATCC 19624] gb|EGI75956.1| hypothetical protein HGR_13604 [Hylemonella gracilis ATCC 19624] Length = 214 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 123/214 (57%), Positives = 162/214 (75%), Gaps = 1/214 (0%) Query: 1 MKTDDLISMMASGVAPVDRRLPVKQMAQALVLGGLGSLLLMLKIYGLRPDLAVMLGVPLF 60 MKT D+IS++A+ VAPVDR + K+ A AL++GG+G++LLML +GLRPDL ML VPLF Sbjct: 1 MKTKDMISLLAADVAPVDRHVAAKRFAGALLVGGIGAVLLMLLRFGLRPDLQAMLSVPLF 60 Query: 61 WIKLAFPTTLAVGAMLVLRRLVRPGLRVGA-NWAGIALPAMAVWLGGAAVLLSAPVAQQL 119 WIK+A P L +GA+ RL RPG+ V A WA + LP + +W VL P +++ Sbjct: 61 WIKMAVPLALGLGALAAAARLSRPGVPVTALGWAALILPVLLLWSAAVTVLWLTPAPERM 120 Query: 120 PLLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLSGAVAGLLAGATATMVYCLH 179 LL+G SW+ CPFNIA+LS+P FI + A+RG+APTR R +GA+AGLL+G+ AT+VYCLH Sbjct: 121 DLLLGQSWKECPFNIAMLSVPGFIAVMGAMRGLAPTRPRWAGAMAGLLSGSVATLVYCLH 180 Query: 180 CPEMGVPFWGIWYFLGILIPAVLGLLLGPRLLRW 213 CPEMGVPFW +WY LG+L+PA++G LLGPRLLRW Sbjct: 181 CPEMGVPFWAVWYLLGMLLPALVGALLGPRLLRW 214 >ref|YP_586818.1| hypothetical protein Rmet_4687 [Cupriavidus metallidurans CH34] gb|ABF11549.1| conserved hypothetical protein; putative membrane protein [Cupriavidus metallidurans CH34] Length = 213 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 124/213 (58%), Positives = 162/213 (76%) Query: 1 MKTDDLISMMASGVAPVDRRLPVKQMAQALVLGGLGSLLLMLKIYGLRPDLAVMLGVPLF 60 MKTDDLIS++A+G+ PVD + + +AL G G+LLL+ YG+RPD+ VML P+F Sbjct: 1 MKTDDLISLLATGIRPVDPHIMHRAFVRALCAGAAGALLLLTMTYGVRPDIRVMLVTPIF 60 Query: 61 WIKLAFPTTLAVGAMLVLRRLVRPGLRVGANWAGIALPAMAVWLGGAAVLLSAPVAQQLP 120 W+K+AFP +LA+GA +VL+RLV PG +VG WA +P +AVW+G AVL + P ++L Sbjct: 61 WLKVAFPLSLAIGAFVVLKRLVVPGAQVGTRWAVPGVPVLAVWIGALAVLANVPATERLS 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLSGAVAGLLAGATATMVYCLHC 180 L++G++WR+CPFNI LS+PL + + WAVR MAPT LR + A+AGLLAG+ AT+VYCLHC Sbjct: 121 LMLGMTWRTCPFNIVFLSLPLCVALVWAVRQMAPTNLRAASALAGLLAGSVATIVYCLHC 180 Query: 181 PEMGVPFWGIWYFLGILIPAVLGLLLGPRLLRW 213 PEM VPFW IWY G+LIPA LG LLGPRLLRW Sbjct: 181 PEMEVPFWAIWYLAGMLIPAALGWLLGPRLLRW 213