BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3888.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776622.1| transmembrane protein [Herbaspirillum serope... 305 6e-81 ref|YP_001101579.1| hypothetical protein HEAR3355 [Herminiimonas... 238 7e-61 ref|YP_004751486.1| hypothetical protein CFU_0829 [Collimonas fu... 200 3e-49 ref|YP_001355267.1| hypothetical protein mma_3577 [Janthinobacte... 194 1e-47 ref|YP_003776138.1| hypothetical protein Hsero_2734 [Herbaspiril... 159 7e-37 >ref|YP_003776622.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64714.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 184/262 (70%), Positives = 215/262 (82%), Gaps = 5/262 (1%) Query: 39 LPCLVPMSMSLPVLISALASSLLLPPVSPFLMCLTGFWLRRRAPR---TGLALMLLGALI 95 P +PM +S VL+SALAS+LLLPPVSP L+ L G LRR APR GL L++LG Sbjct: 10 FPVCLPMPLS--VLVSALASTLLLPPVSPLLLALAGLLLRRHAPRWRRFGLLLIVLGVAT 67 Query: 96 LLVLSTRIGALWVIRPLEAQYAPLASAGNAQAIVVLGSGRIDQAPEYGGSDDSTAIGMKR 155 LLVLSTR+G+L +I PLE Y L S G AQAIV+LGSGRID+APEYGG DD+ AIGMKR Sbjct: 68 LLVLSTRVGSLLLIAPLENSYPVLRSPGQAQAIVILGSGRIDRAPEYGGLDDANAIGMKR 127 Query: 156 LQYAAYLARRTGLPILVTGGSPDGSPESEAALMARNLQRDFGVPVRWQETRADTTAQNAS 215 LQY AYL R++GLPILVTGG+PDGSPESEAA+MAR L+RDF VPVRWQE R++TT NA+ Sbjct: 128 LQYGAYLHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRSNTTYDNAT 187 Query: 216 YSAAMLKADGIERILLVTDSIHMPRAMRVFAYTGLQVQAAPTVFAGRSRPRLTDYLPRAG 275 SAAMLK GI RILLVTDS+HMPRAM+VFA TGLQVQAAPTVFAG++R R+TDYLP A Sbjct: 188 LSAAMLKEAGISRILLVTDSLHMPRAMQVFATTGLQVQAAPTVFAGQARTRVTDYLPNAA 247 Query: 276 NLELASYALREWVGQLWYSLRR 297 +L+LASYALREW+GQLWY +R+ Sbjct: 248 SLQLASYALREWIGQLWYRVRQ 269 >ref|YP_001101579.1| hypothetical protein HEAR3355 [Herminiimonas arsenicoxydans] emb|CAL63458.1| Conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 256 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 139/252 (55%), Positives = 174/252 (69%), Gaps = 4/252 (1%) Query: 47 MSLPVLISALASSLLLPPVSPFLMCLTGFWLRRRAPRTGLALMLLGALILLVLSTRIGAL 106 MS +I+A S++LLPP++ L+C G WLRRR PR GL L + ++L VLSTR+GA Sbjct: 1 MSASWMINATISAVLLPPLNFILLCALGLWLRRRWPRGGLTLSVAALIMLTVLSTRMGAS 60 Query: 107 WVIRPLEAQYAPL--ASAGNAQAIVVLGSGRIDQAPEYGGSDDSTAIGMKRLQYAAYLAR 164 + PLE PL A A AQAIVVLG GRI APEYGG D AI ++RL+YAA L R Sbjct: 61 LFVHPLEKMNPPLLSAKAAGAQAIVVLGGGRISNAPEYGGQDIPAAITLQRLRYAAKLQR 120 Query: 165 RTGLPILVTGGSPDGSPESEAALMARNLQRDFGVPVRWQETRADTTAQNASYSAAMLKAD 224 TGLP+LV+GG PDG+ ESEAA MAR L DF VPV+WQE ++ TA+NA +S+ +L+A Sbjct: 121 ETGLPLLVSGGRPDGASESEAAGMARVLLDDFSVPVKWQEEMSNNTAENAQFSSRVLRAA 180 Query: 225 GIERILLVTDSIHMPRAMRVFAYTGLQVQAAPTVFAGRSRPRLTDYLPRAGNLELASYAL 284 G++RILLVTD+IHM RA F GLQV A T+F +R L D+LP + L +ASYAL Sbjct: 181 GVQRILLVTDAIHMQRAKIAFQQAGLQVVPAATLFTSAARVTLPDFLPTS--LHMASYAL 238 Query: 285 REWVGQLWYSLR 296 REW+G WY LR Sbjct: 239 REWLGLAWYCLR 250 >ref|YP_004751486.1| hypothetical protein CFU_0829 [Collimonas fungivorans Ter331] gb|AEK60663.1| hypothetical protein CFU_0829 [Collimonas fungivorans Ter331] Length = 272 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 129/266 (48%), Positives = 169/266 (63%), Gaps = 6/266 (2%) Query: 33 AQCRAALPCLVPM----SMSLPVLISALASSLLLPPVSPFLMCLTGFWLRRRAPRTGLAL 88 A RA PC P+ +M V+++ + S+LLL P + L C+TG LRR PRTG+A+ Sbjct: 7 APVRAPWPCWHPLFDRVAMHATVIVTKVLSTLLLLPTNLILTCITGLLLRRAYPRTGMAI 66 Query: 89 MLLGALILLVLSTRIGALWVIRPLEAQYAPLA--SAGNAQAIVVLGSGRIDQAPEYGGSD 146 + L+L +LST+ GAL ++ P+E + PLA AQAIV+LG GR APEYGG D Sbjct: 67 SMSSLLLLAILSTKAGALLLVMPMEQRSPPLAVSEVDGAQAIVILGGGRQANAPEYGGDD 126 Query: 147 DSTAIGMKRLQYAAYLARRTGLPILVTGGSPDGSPESEAALMARNLQRDFGVPVRWQETR 206 + RL+Y A L R+TGLPILV+GG+PDGS SEAA+M +L+ DF PVRW E Sbjct: 127 SPNYWTLARLRYGAKLQRQTGLPILVSGGTPDGSRISEAAIMENSLRDDFATPVRWLEGA 186 Query: 207 ADTTAQNASYSAAMLKADGIERILLVTDSIHMPRAMRVFAYTGLQVQAAPTVFAGRSRPR 266 +D T QNAS+SA +L+ I +I+LVTD++HM RA +FA GL V +APTVF R R Sbjct: 187 SDDTKQNASFSAEILRQARIRKIILVTDAVHMHRARLLFAQAGLTVISAPTVFFSRERLT 246 Query: 267 LTDYLPRAGNLELASYALREWVGQLW 292 L +LP L + YAL EWVG W Sbjct: 247 LLSFLPSGEGLRRSEYALHEWVGLFW 272 >ref|YP_001355267.1| hypothetical protein mma_3577 [Janthinobacterium sp. Marseille] gb|ABR90355.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 258 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 114/221 (51%), Positives = 143/221 (64%), Gaps = 2/221 (0%) Query: 78 RRRAPRTGLALMLLGALILLVLSTRIGALWVIRPLEAQYAPL--ASAGNAQAIVVLGSGR 135 R R PR GL L +L ++L + STR GA I PLE PL A AQAIVVLG GR Sbjct: 32 RPRWPRLGLGLSVLALVVLALCSTRFGATLFISPLEKFNPPLQLGDASGAQAIVVLGGGR 91 Query: 136 IDQAPEYGGSDDSTAIGMKRLQYAAYLARRTGLPILVTGGSPDGSPESEAALMARNLQRD 195 I A EY G D ++ + RL+YAA L R T LP+LV+GG PDG+ SEAA+MAR L+ D Sbjct: 92 ISNALEYAGQDIPSSPTLHRLRYAATLYRTTHLPVLVSGGQPDGAAVSEAAVMARVLRED 151 Query: 196 FGVPVRWQETRADTTAQNASYSAAMLKADGIERILLVTDSIHMPRAMRVFAYTGLQVQAA 255 F VPVRW E ++ TA+NA SA ML+ G++ ILLVTD++HM RA +VF GL+V AA Sbjct: 152 FSVPVRWLEQASNNTAENAQLSARMLREAGVKHILLVTDAMHMQRAKQVFTQAGLKVVAA 211 Query: 256 PTVFAGRSRPRLTDYLPRAGNLELASYALREWVGQLWYSLR 296 PT+F +R D+LP + L+ SYAL EW+G WY R Sbjct: 212 PTIFISNARHTPADFLPSSQWLQQTSYALHEWLGLAWYRWR 252 >ref|YP_003776138.1| hypothetical protein Hsero_2734 [Herbaspirillum seropedicae SmR1] gb|ADJ64230.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 109/230 (47%), Positives = 142/230 (61%), Gaps = 7/230 (3%) Query: 74 GFWL-RRRAP--RTGLALMLLGALILLVLSTRIGALWVIRPLEAQYAPLAS--AGNAQAI 128 GF L RR AP G ++ LG +L ++ A ++RPLE Y L++ A AQAI Sbjct: 24 GFLLWRRPAPIGHIGQVMVALGVALLTLICMPAVADLMVRPLEQGYPVLSAEAARQAQAI 83 Query: 129 VVLGSGRIDQAPEYGGSDDSTAIGMKRLQYAAYLARRTGLPILVTGGSP-DGSPESEAAL 187 VVL +G +DQAPEY G D + + RL+YAA L +TGLP+LV+GG+ + +PE AL Sbjct: 84 VVLAAGSLDQAPEYEGRDQPDYVALARLRYAARLQHQTGLPVLVSGGNAREETPEQNKAL 143 Query: 188 -MARNLQRDFGVPVRWQETRADTTAQNASYSAAMLKADGIERILLVTDSIHMPRAMRVFA 246 MA L+ DF PVRW E ++ T +NA SAA+L+ADG++R+LLVTD++HMPRAM FA Sbjct: 144 AMAEALREDFRTPVRWIEGGSENTEENALRSAALLRADGVQRVLLVTDAMHMPRAMLAFA 203 Query: 247 YTGLQVQAAPTVFAGRSRPRLTDYLPRAGNLELASYALREWVGQLWYSLR 296 GL AAPT F R R LP A L + YA EW+G WY LR Sbjct: 204 QAGLVPTAAPTAFFSLPRWRWPALLPSAEGLRRSWYASYEWLGLGWYRLR 253