BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3887.p (427 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776621.1| hypothetical protein Hsero_3232 [Herbaspiril... 613 e-173 ref|ZP_06640038.1| conserved hypothetical protein [Serratia odor... 448 e-124 ref|ZP_04614424.1| hypothetical protein yrohd0001_3190 [Yersinia... 447 e-123 ref|ZP_06688312.1| conserved hypothetical protein [Achromobacter... 423 e-116 ref|YP_001631828.1| putative Zn-dependent proteases [Bordetella ... 423 e-116 >ref|YP_003776621.1| hypothetical protein Hsero_3232 [Herbaspirillum seropedicae SmR1] gb|ADJ64713.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 483 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 332/424 (78%), Positives = 363/424 (85%), Gaps = 8/424 (1%) Query: 2 IDALDGVLNFPLTLFGYLLLVESLVTLWMANSGVGAQKTLRYAKGGLFLLIAVLVITQHQ 61 IDALDGVLNFPLTLFGYLLL+ESLVTLW+ANSG+GAQKTLRY KG LFLLIAVLVITQHQ Sbjct: 51 IDALDGVLNFPLTLFGYLLLLESLVTLWVANSGIGAQKTLRYVKGALFLLIAVLVITQHQ 110 Query: 62 ASNMALAMLFGIAFTIGGSLQITSALVVRFPRWRTALAGGIGQILIAIFFFQPYPTHYKG 121 ASNMALAMLFGIAF IGG+LQITSALVVRFPRWRTAL GG QIL+AIFFFQPYPTHYKG Sbjct: 111 ASNMALAMLFGIAFAIGGALQITSALVVRFPRWRTALVGGGVQILLAIFFFQPYPTHYKG 170 Query: 122 TVPYCLALGLIFGGWNMIWLASRSRRLPRESSLSQLAYRNADSDRPLDAGSYDG------ 175 TVP+CLALGLIFGGWNMIWLA R+R LP + S+ LA RN+ DRP DAG + Sbjct: 171 TVPFCLALGLIFGGWNMIWLALRTRMLPADVSVDMLAARNSGDDRPFDAGVHRDDATLEE 230 Query: 176 --QLAATTPTVNASATPLTVHVWTPAGSAREATLHRPIVDRYIAAVDASGVISTGHAALE 233 Q AT ++A PLTVHVWTPAGSAR +P++DRYIAAVD +GVISTGHAALE Sbjct: 231 MRQPPATPAAAVSAAQPLTVHVWTPAGSARGPARRQPVIDRYIAAVDTNGVISTGHAALE 290 Query: 234 IAPSLYISLYPAVEIDRSPGEFSRLLRATPDNNVRGRYLADYPSESAAWCESTEKISFRD 293 I P LYISLYPA EIDRSP +F+RLLRAT DN+V+GRYL+DYPSE+A+WCESTEKI FRD Sbjct: 291 IPPDLYISLYPAEEIDRSPDQFARLLRATADNDVKGRYLSDYPSEAASWCESTEKIVFRD 350 Query: 294 YDARHLQQFWQDYRREEIYNLTYRNCSSTVAHALEAALEGVIGGRDRHWFNAVRMMFTPE 353 Y L +FWQ YR+ EIYNLT RNCSSTVA+ALE+ALEGVIGGR+RHW NA+RM+FTPE Sbjct: 351 YCRARLDRFWQRYRQTEIYNLTNRNCSSTVANALESALEGVIGGRNRHWTNALRMIFTPE 410 Query: 354 IWVASQIRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRRLRKAWRTA 413 IWVAS IRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRRLRK WR Sbjct: 411 IWVASHIRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRRLRKGWRAR 470 Query: 414 RRQA 417 RR A Sbjct: 471 RRYA 474 >ref|ZP_06640038.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gb|EFE94940.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 464 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 227/429 (52%), Positives = 297/429 (69%), Gaps = 12/429 (2%) Query: 2 IDALDGVLNFPLTLFGYLLLVESLVTLWMANSGVGAQKTLRYAKGGLFLLIAVLVITQHQ 61 IDALD L FPL F +LLL+E + TL +A++G+G Q+TLRY KGG F+L AVL++ H Sbjct: 37 IDALDDALYFPLNPFAWLLLLEGIATLMVAHTGIGGQRTLRYVKGGAFVLAAVLILAGHH 96 Query: 62 ASNMALAMLFGIAFTIGGSLQITSALVVRFPRWRTALAGGIGQILIAIFFFQPYPTHYKG 121 + L+M+FG F G LQ SA VVR+ W+ A+ GG+ +I +AIFF+QPYPTHY G Sbjct: 97 HGHFVLSMIFGTLFLADGLLQTISATVVRYKNWKLAVVGGLIEIALAIFFYQPYPTHYVG 156 Query: 122 TVPYCLALGLIFGGWNMIWLASRSRRLPRESSL--SQLAYRNADSDRPLDAGSYDGQLAA 179 TVPYCL LGLIFGGWNM+ LA R RR+ ++ + A +++ ++ ++DG A Sbjct: 157 TVPYCLGLGLIFGGWNMLMLAMRVRRMDINPAVQGNDAAEQSSSANTRPQLTTWDGPPAD 216 Query: 180 TTPTVNASATPLTVHVWTPAGSAREATLHRPIVDRYIAAVDASGVISTGHAALEIAPSLY 239 P LTVHVWTP GS++ AT+ P++DRYIAAVD GVISTGHAALE +Y Sbjct: 217 DEPA-------LTVHVWTPVGSSKNATVPHPVIDRYIAAVDKDGVISTGHAALEAPEGVY 269 Query: 240 ISLYPAVEIDRSPGEFSRLLRATPDNNVRGRYLADYPSESAAWCESTEKISFRDYDARHL 299 ISLYPA +IDRSP +F+RLLRAT +NNV G + DYP+ES+AWC ST ++ R+YDA L Sbjct: 270 ISLYPAEDIDRSPEQFTRLLRATEENNVAGVFQPDYPTESSAWCPSTVRVRIRNYDAARL 329 Query: 300 QQFWQDYRREEIYNLTYRNCSSTVAHALEAALEGVIG---GRDRHWFNAVRMMFTPEIWV 356 Q+FW+ YR+++ YNLT+RNCSS+VA+ LEAALEGV+G G+ RHW +++ TPE+WV Sbjct: 330 QRFWEVYRQDKTYNLTHRNCSSSVANGLEAALEGVVGKIWGQQRHWRALTKILTTPELWV 389 Query: 357 ASQIRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRRLRKAWRTARRQ 416 A QIRKRA TMAWTPG+ LDYARAL + PRP W + A+R+ LRK WR + Sbjct: 390 AVQIRKRAKTMAWTPGLTLDYARALSMLADPRPTGWLTTAQRAVRKIFSLRKQWRDEKPD 449 Query: 417 ADVNSTLLD 425 A + D Sbjct: 450 ATAAQPVTD 458 >ref|ZP_04614424.1| hypothetical protein yrohd0001_3190 [Yersinia rohdei ATCC 43380] gb|EEQ01081.1| hypothetical protein yrohd0001_3190 [Yersinia rohdei ATCC 43380] Length = 461 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 222/431 (51%), Positives = 297/431 (68%), Gaps = 12/431 (2%) Query: 2 IDALDGVLNFPLTLFGYLLLVESLVTLWMANSGVGAQKTLRYAKGGLFLLIAVLVITQHQ 61 IDALD V+ FPL F LLL+E + TL +A++G+G Q+TLRY KGG F L A+L+++ Sbjct: 32 IDALDNVIYFPLNPFACLLLLEGVATLMVAHTGIGGQRTLRYVKGGAFSLAALLILSGQH 91 Query: 62 ASNMALAMLFGIAFTIGGSLQITSALVVRFPRWRTALAGGIGQILIAIFFFQPYPTHYKG 121 + L+M+FG F G LQI SA VVR+ W+ +AGG+ +++IAIFFFQPYPTHY G Sbjct: 92 HGHFILSMIFGTLFLADGLLQIVSAGVVRYKNWKFVVAGGVLEVMIAIFFFQPYPTHYAG 151 Query: 122 TVPYCLALGLIFGGWNMIWLASRSRRLPRESSL--SQLAYRNADSDRPLDAGSYDGQLAA 179 TVPYCL LGL+FGGWNM+ LA R ++L + ++ A +++ + +DG AA Sbjct: 152 TVPYCLGLGLMFGGWNMVMLAMRVKKLKVNPAFLGNKAAEKSSSAATTPMVTEWDGPPAA 211 Query: 180 TTPTVNASATPLTVHVWTPAGSAREATLHRPIVDRYIAAVDASGVISTGHAALEIAPSLY 239 P LTVHVWTP GS++ + P++DRYIAAVD +GVISTGHAALE +Y Sbjct: 212 DEPA-------LTVHVWTPVGSSKGTIVPHPVIDRYIAAVDKNGVISTGHAALESPEGVY 264 Query: 240 ISLYPAVEIDRSPGEFSRLLRATPDNNVRGRYLADYPSESAAWCESTEKISFRDYDARHL 299 ISLYPAV++DRSP +FSRLLRAT DNNV G++ DY +ES WC ST ++ R+YDA+ L Sbjct: 265 ISLYPAVDLDRSPEQFSRLLRATADNNVEGQFQPDYVTESEKWCPSTTQVRIRNYDAKRL 324 Query: 300 QQFWQDYRREEIYNLTYRNCSSTVAHALEAALEGVIG---GRDRHWFNAVRMMFTPEIWV 356 ++FW+ YR + YNLT+RNCSS+ A LEAALEGV+G G+ HW+ +++ TPE+WV Sbjct: 325 KRFWEIYREDNTYNLTHRNCSSSAARGLEAALEGVVGKIWGQRGHWWVLSKILTTPELWV 384 Query: 357 ASQIRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRRLRKAWRTARRQ 416 A QIRKRA TMAWTPG+ LDYARAL + PRP W A++ A+R+ LR+ WR + Q Sbjct: 385 AVQIRKRAKTMAWTPGLTLDYARALSMLADPRPAGWVATIRRAVRKMSALRQQWRKEKAQ 444 Query: 417 ADVNSTLLDKP 427 A + ++P Sbjct: 445 ATIEEDARNEP 455 >ref|ZP_06688312.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF74840.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 467 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 227/429 (52%), Positives = 282/429 (65%), Gaps = 20/429 (4%) Query: 2 IDALDGVLNFPLTLFGYLLLVESLVTLWMANSGVGAQKTLRYAKGGLFLLIAVLVITQHQ 61 IDALDGVL FPL F L ++E L TL +A+SGVG Q+ LRY KG LL L++ H Sbjct: 37 IDALDGVLYFPLNAFAALFIIEGLATLMIASSGVGGQRVLRYVKGLFVLLAGSLILAGHH 96 Query: 62 ASNMALAMLFGIAFTIGGSLQITSALVVRFPRWRTALAGGIGQILIAIFFFQPYPTHYKG 121 + AL+M+FG F + G LQ +A VVR+ RWR A AGGI +IL+AIFFFQPYPTHY G Sbjct: 97 HGHFALSMIFGALFLLDGLLQCLAAYVVRYERWRYAFAGGIVEILLAIFFFQPYPTHYVG 156 Query: 122 TVPYCLALGLIFGGWNMIWLASRSRRLPRESSL----------SQLAYRNADSDRPLDAG 171 TVPYC+ L L G ++WLA R +RL + S+ A + + P Sbjct: 157 TVPYCVGLFLGIAGMKLLWLARRVKRLASNPAFASNPSPDFLPSEPAPASPSTPGPQRPT 216 Query: 172 SYDGQLAATTPTVNASATPLTVHVWTPAGSAREATLHRPIVDRYIAAVDASGVISTGHAA 231 +DG A S LTVHVWTP+GSA+ T + P+VDRYIAAVD +GVISTGHAA Sbjct: 217 VWDGPPAD-------SERALTVHVWTPSGSAKAQTRNYPLVDRYIAAVDVNGVISTGHAA 269 Query: 232 LEIAPSLYISLYPAVEIDRSPGEFSRLLRATPDNNVRGRYLADYPSESAAWCESTEKISF 291 LE +YISLYP EIDRSP EF LLRAT +N++ G Y DY +ES AWC ST ++ F Sbjct: 270 LESPEGIYISLYPRDEIDRSPDEFGSLLRATAENDIPGVYQPDYATESKAWCPSTIRVRF 329 Query: 292 RDYDARHLQQFWQDYRREEIYNLTYRNCSSTVAHALEAALEGVIG---GRDRHWFNAVRM 348 R+YDAR L FWQ+YR++ YNLT+RNCSS+VA AL+AAL+GV+G G + W +R+ Sbjct: 330 RNYDARKLADFWQEYRQDSTYNLTHRNCSSSVARALDAALDGVVGRLHGSEAGWRVFLRL 389 Query: 349 MFTPEIWVASQIRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRRLRK 408 + TPE+WVASQIRKRA+TMAWTPG+ LDYARA+ + PRP W ALRQ +LR Sbjct: 390 LLTPELWVASQIRKRALTMAWTPGLTLDYARAMSMLADPRPFGWWKMSQAALRQISQLRA 449 Query: 409 AWRTARRQA 417 WR R A Sbjct: 450 RWRDQDRNA 458 >ref|YP_001631828.1| putative Zn-dependent proteases [Bordetella petrii DSM 12804] emb|CAP43560.1| Putative Zn-dependent proteases [Bordetella petrii] Length = 449 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 220/406 (54%), Positives = 285/406 (70%), Gaps = 1/406 (0%) Query: 1 MIDALDGVLNFPLTLFGYLLLVESLVTLWMANSGVGAQKTLRYAKGGLFLLIAVLVITQH 60 + D +DGV FP +FG LL+ESLVTL +A+ G+GAQK + Y KGGLFL IAVL+++ Sbjct: 36 LADGMDGVRYFPAHVFGAFLLLESLVTLAVASGGIGAQKAVLYFKGGLFLFIAVLILSGR 95 Query: 61 QASNMALAMLFGIAFTIGGSLQITSALVVRFPRWRTALAGGIGQILIAIFFFQPYPTHYK 120 SN+ LA++FG+A+ + G+LQ+ S+ VVRFP W+ A GG+ Q+ AIF FQPYPTHY+ Sbjct: 96 HTSNLMLAIVFGLAYFVMGTLQMASSWVVRFPHWKQAFLGGLAQMAFAIFLFQPYPTHYR 155 Query: 121 GTVPYCLALGLIFGGWNMIWLASRSRRLPR-ESSLSQLAYRNADSDRPLDAGSYDGQLAA 179 GT+ + + L+ GG N +A R+R++P S LA R+ R ++ A Sbjct: 156 GTLSAFVGVTLLVGGINTWRIARRARKMPDGRSVFDLLAPRDLLPHRHRESARDAAAAAP 215 Query: 180 TTPTVNASATPLTVHVWTPAGSAREATLHRPIVDRYIAAVDASGVISTGHAALEIAPSLY 239 +A +PL VHVWTP GS++ + RP+++RYIAAVDA GVISTGHAALE+ P+ Y Sbjct: 216 APAATDAVQSPLVVHVWTPEGSSKHEPVPRPLINRYIAAVDAKGVISTGHAALELPPATY 275 Query: 240 ISLYPAVEIDRSPGEFSRLLRATPDNNVRGRYLADYPSESAAWCESTEKISFRDYDARHL 299 ISLYPAVEIDRSP EF RLL+AT DN+V G + DYP+ESAAWC ST ++ F Y+A L Sbjct: 276 ISLYPAVEIDRSPSEFFRLLKATRDNDVPGEFQPDYPTESAAWCPSTRQVLFHSYNAAGL 335 Query: 300 QQFWQDYRREEIYNLTYRNCSSTVAHALEAALEGVIGGRDRHWFNAVRMMFTPEIWVASQ 359 Q+FWQ YR+ EIYNLTYRNCSSTV+ ALEAAL+G + W +R + PE+W+A+Q Sbjct: 336 QRFWQAYRQREIYNLTYRNCSSTVSFALEAALDGALQHEAGAWRRVLRTLLMPELWIAAQ 395 Query: 360 IRKRAVTMAWTPGMVLDYARALRAVVHPRPLSWAASLHLALRQSRR 405 +RKRA TMAWTPG+VLDYARALRA+VHP SW SL A RQ R Sbjct: 396 VRKRATTMAWTPGLVLDYARALRAIVHPAQASWLHSLRWAARQQSR 441