BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3882.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776616.1| hypothetical protein Hsero_3227 [Herbaspiril...   171   4e-41

>ref|YP_003776616.1| hypothetical protein Hsero_3227 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64708.1| hypothetical protein Hsero_3227 [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/136 (65%), Positives = 109/136 (80%)

Query: 1   MIKSLAASLTLLMALTACTTPVERTASGDIPAARVYIKSMTEQAAGLSQISFTRAAGLLN 60
           MIK+LAAS+T+ +AL AC TPV+RTASGDIP  RVYIKSMTEQA GLS++ F R  GLLN
Sbjct: 4   MIKALAASITVALALAACATPVQRTASGDIPPPRVYIKSMTEQAEGLSRVQFQRPGGLLN 63

Query: 61  NDMLELAINDVVLAQIAGGERLSIWLKPGSYDFSVKRVNSLGSNAGPTTDKLTLQVAQGG 120
           NDMLEL INDV LAQI GGE L+IWLKPGSYD   KRV++L +++  + DKLTLQV  G 
Sbjct: 64  NDMLELTINDVTLAQIIGGEHLTIWLKPGSYDLGAKRVHTLTNSSSSSEDKLTLQVRPGA 123

Query: 121 SYQIQISTELRGLNLQ 136
           SYQ+Q+ T+L G+ ++
Sbjct: 124 SYQLQVGTDLGGVKMR 139