BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3879.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776613.1| dihydroorotate dehydrogenase [Herbaspirillum... 554 e-156 ref|YP_001100695.1| dihydroorotate dehydrogenase 2 [Herminiimona... 480 e-134 ref|YP_004753656.1| dihydroorotate dehydrogenase [Collimonas fun... 476 e-132 ref|YP_001354203.1| dihydroorotate dehydrogenase 2 [Janthinobact... 472 e-131 ref|YP_583368.1| dihydroorotate dehydrogenase 2 [Cupriavidus met... 469 e-130 >ref|YP_003776613.1| dihydroorotate dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ64705.1| dihydroorotate dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 287/302 (95%), Positives = 293/302 (97%), Gaps = 1/302 (0%) Query: 1 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAV 60 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAA+AV Sbjct: 54 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAASAV 113 Query: 61 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVACLEKVYPY 120 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDY+ CLEKVYPY Sbjct: 114 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYLHCLEKVYPY 173 Query: 121 ASYVTVNISSPNTKNLRQLQGASELDSLLSQLKSAQRRLADHHGRYVPVVLKIAPDMDME 180 ASYVTVNISSPNTKNLRQLQGASELD+LLSQLKSAQ RLAD HGRYVPV LKIAPDMDME Sbjct: 174 ASYVTVNISSPNTKNLRQLQGASELDALLSQLKSAQHRLADRHGRYVPVALKIAPDMDME 233 Query: 181 QVKNVADALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAE 240 QVKNVADALLRHQIDGVIATNTTITRDAV+GMPHGEEAGGLSGKPVLELSNQVIRGLKAE Sbjct: 234 QVKNVADALLRHQIDGVIATNTTITRDAVKGMPHGEEAGGLSGKPVLELSNQVIRGLKAE 293 Query: 241 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVHECAEALRVPQGPVAA 300 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALV ECAEALR+P +A Sbjct: 294 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVRECAEALRMPVA-ASA 352 Query: 301 HH 302 HH Sbjct: 353 HH 354 >ref|YP_001100695.1| dihydroorotate dehydrogenase 2 [Herminiimonas arsenicoxydans] sp|A4G7T7|PYRD_HERAR RecName: Full=Dihydroorotate dehydrogenase (quinone); AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase emb|CAL62574.1| Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD) [Herminiimonas arsenicoxydans] Length = 347 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 240/294 (81%), Positives = 265/294 (90%) Query: 1 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAV 60 MGITFPNPVG+AAGLDKDGAYIDGLA LGFGFIEVGTVTP AQPGNPLPRMFRLP ANA+ Sbjct: 53 MGITFPNPVGLAAGLDKDGAYIDGLATLGFGFIEVGTVTPHAQPGNPLPRMFRLPQANAI 112 Query: 61 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVACLEKVYPY 120 INRMGFNNGGVDAFV+NVQ+SRFYQ ++G+LGLNIGKNADTPIERA +DY+ CLEKVYPY Sbjct: 113 INRMGFNNGGVDAFVSNVQASRFYQNKEGILGLNIGKNADTPIERAVDDYLICLEKVYPY 172 Query: 121 ASYVTVNISSPNTKNLRQLQGASELDSLLSQLKSAQRRLADHHGRYVPVVLKIAPDMDME 180 ASYVTVNISSPNTKNLRQLQGASELD+LL+QLK AQ+RLAD H RYVP+ LKIAPD+D E Sbjct: 173 ASYVTVNISSPNTKNLRQLQGASELDALLAQLKEAQQRLADQHQRYVPIALKIAPDIDTE 232 Query: 181 QVKNVADALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAE 240 Q++ +A ALLRH++DGVIATNTTI R+AV+ M H EEAGGLSG PV SN VIR LKAE Sbjct: 233 QIQTIAQALLRHKMDGVIATNTTINREAVKNMKHAEEAGGLSGAPVFASSNAVIRALKAE 292 Query: 241 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVHECAEALRVP 294 +GDALPIIGVGGI SG DA+AKI AGASLVQLYTGLIY+GPAL+ ECA ALR P Sbjct: 293 LGDALPIIGVGGILSGTDAQAKIAAGASLVQLYTGLIYRGPALIRECAAALRAP 346 >ref|YP_004753656.1| dihydroorotate dehydrogenase [Collimonas fungivorans Ter331] gb|AEK62833.1| Dihydroorotate dehydrogenase [Collimonas fungivorans Ter331] Length = 356 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 245/292 (83%), Positives = 269/292 (92%) Query: 1 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAV 60 MGI+FPNPVG+AAGLDKDGAYIDGLAALGFG IEVGTVTPRAQ GNP PRMFRLPAANA+ Sbjct: 62 MGISFPNPVGLAAGLDKDGAYIDGLAALGFGSIEVGTVTPRAQAGNPKPRMFRLPAANAI 121 Query: 61 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVACLEKVYPY 120 INRMGFNNGGVDAFVANVQ+SRFYQERQGVLGLNIGKNADTPIERAAEDY+ CL+KVYPY Sbjct: 122 INRMGFNNGGVDAFVANVQASRFYQERQGVLGLNIGKNADTPIERAAEDYLHCLQKVYPY 181 Query: 121 ASYVTVNISSPNTKNLRQLQGASELDSLLSQLKSAQRRLADHHGRYVPVVLKIAPDMDME 180 ASYVTVNISSPNTKNLRQLQGASELD+LLSQLK AQ++LAD + RYVP+ LKIAPD+D E Sbjct: 182 ASYVTVNISSPNTKNLRQLQGASELDALLSQLKQAQQKLADQYQRYVPIALKIAPDIDAE 241 Query: 181 QVKNVADALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAE 240 Q+K +ADALLRH+IDGVIATNTTI+RDAV+G+ H EAGGLSG PVL LS V+R L E Sbjct: 242 QIKTIADALLRHKIDGVIATNTTISRDAVRGLQHENEAGGLSGAPVLALSTSVVRQLHGE 301 Query: 241 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVHECAEALR 292 +GDALPIIGVGGIFSGADA+AK+ AGASLVQLY+GLIY+GPALV ECA ALR Sbjct: 302 LGDALPIIGVGGIFSGADAQAKMAAGASLVQLYSGLIYRGPALVRECAAALR 353 >ref|YP_001354203.1| dihydroorotate dehydrogenase 2 [Janthinobacterium sp. Marseille] sp|A6T106|PYRD_JANMA RecName: Full=Dihydroorotate dehydrogenase (quinone); AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase gb|ABR88507.1| dihydroorotate oxidase [Janthinobacterium sp. Marseille] Length = 345 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 235/291 (80%), Positives = 265/291 (91%) Query: 1 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAV 60 MGITFPNPVG+AAGLDKDGAYIDGLA LGFG IEVGTVTPRAQPGNP+PRMFRLP ANA+ Sbjct: 53 MGITFPNPVGLAAGLDKDGAYIDGLATLGFGSIEVGTVTPRAQPGNPMPRMFRLPKANAI 112 Query: 61 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVACLEKVYPY 120 INRMGFNNGG DAFVANV+SS+FYQ ++GVLGLNIGKNADTPIERA +DY+ CLEKVYPY Sbjct: 113 INRMGFNNGGADAFVANVRSSKFYQNKEGVLGLNIGKNADTPIERAVDDYLICLEKVYPY 172 Query: 121 ASYVTVNISSPNTKNLRQLQGASELDSLLSQLKSAQRRLADHHGRYVPVVLKIAPDMDME 180 ASYVTVNISSPNTKNLRQLQGASELD+LLSQLK AQ+RL+D H RYVP+ LKIAPDM++E Sbjct: 173 ASYVTVNISSPNTKNLRQLQGASELDALLSQLKEAQQRLSDQHKRYVPIALKIAPDMELE 232 Query: 181 QVKNVADALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAE 240 Q++ +A ALLRH++DGVIATNTT++R+AV+G+ + EE GGLSG PV E SN VIR LK+E Sbjct: 233 QIQTIAQALLRHKMDGVIATNTTVSREAVKGLKYAEETGGLSGAPVFEASNTVIRALKSE 292 Query: 241 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVHECAEAL 291 +GDALPIIGVGGI SG DA+AKI AGASLVQLYTGLIY+GPALV ECA AL Sbjct: 293 LGDALPIIGVGGILSGNDAQAKIAAGASLVQLYTGLIYRGPALVKECAAAL 343 >ref|YP_583368.1| dihydroorotate dehydrogenase 2 [Cupriavidus metallidurans CH34] gb|ABF08099.1| dihydroorotate dehydrogenase [Cupriavidus metallidurans CH34] Length = 358 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 235/292 (80%), Positives = 265/292 (90%), Gaps = 1/292 (0%) Query: 1 MGITFPNPVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAV 60 MG+ FPNPVG+AAGLDKDGAYIDGLAA GFGFIEVGTVTPRAQPGNP PRMFRLP A+A+ Sbjct: 67 MGVRFPNPVGLAAGLDKDGAYIDGLAAFGFGFIEVGTVTPRAQPGNPRPRMFRLPQADAL 126 Query: 61 INRMGFNNGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVACLEKVYPY 120 INRMGFNNGGVDAF+ NVQ+SR+ E GVLGLNIGKNADTPIERAA+DY+ CLE+VYP+ Sbjct: 127 INRMGFNNGGVDAFIRNVQASRWKAE-GGVLGLNIGKNADTPIERAADDYLYCLERVYPH 185 Query: 121 ASYVTVNISSPNTKNLRQLQGASELDSLLSQLKSAQRRLADHHGRYVPVVLKIAPDMDME 180 ASYVTVNISSPNTKNLRQLQGASELDSLLS LK+AQ+RLAD H RYVPV LKIAPD+D + Sbjct: 186 ASYVTVNISSPNTKNLRQLQGASELDSLLSTLKAAQQRLADQHKRYVPVALKIAPDLDDD 245 Query: 181 QVKNVADALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAE 240 QV+N+ DAL+RH+IDGVIATNTTI+RDAV+G+PH EEAGGLSG+PV E S +V+R L+ Sbjct: 246 QVRNIGDALVRHKIDGVIATNTTISRDAVKGLPHAEEAGGLSGRPVFEASTRVVRALREV 305 Query: 241 VGDALPIIGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVHECAEALR 292 +GDALPIIGVGGIFSGADARAKIDAGA LVQ+Y+GLIY+GP LV ECA ALR Sbjct: 306 IGDALPIIGVGGIFSGADARAKIDAGAQLVQVYSGLIYRGPTLVRECASALR 357