BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3869.p         (370 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002982189.1| hypothetical protein Rpic12D_2243 [Ralstonia...    86   1e-14
ref|XP_002535666.1| conserved hypothetical protein [Ricinus comm...    79   1e-12
ref|ZP_02360202.1| hypothetical protein BoklE_32312 [Burkholderi...    74   3e-11
ref|XP_002535548.1| conserved hypothetical protein [Ricinus comm...    60   8e-07

>ref|YP_002982189.1| hypothetical protein Rpic12D_2243 [Ralstonia pickettii 12D]
 gb|ACS63517.1| hypothetical protein Rpic12D_2243 [Ralstonia pickettii 12D]
          Length = 466

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 68/117 (58%)

Query: 4   AYSVSNAVPLSALPTTNGVQQQFFAPNTNDGPATFSPDGLSAAPIVGLAGHALQGNEIPA 63
           AY VSNA PL+A PT +G+       NTN G +T + DGL   PI+GL    LQGNE+P 
Sbjct: 107 AYVVSNAAPLTAYPTVSGLTIDVSIANTNTGASTLNVDGLGTKPILGLGLQPLQGNELPQ 166

Query: 64  GALVSLSSYIGPLLNSGALCWLLIDCAGGAQQITPASRGEQAVTLDQLNKTGRSGIR 120
             +  L   +   +N G   W++++C GGAQQ+ PA++ + AV L QL + G    R
Sbjct: 167 KGVACLMYVVASNVNGGNGAWIVMECTGGAQQVGPATQSQHAVQLGQLGQVGHGQCR 223


>ref|XP_002535666.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF26716.1| conserved hypothetical protein [Ricinus communis]
          Length = 384

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 5/188 (2%)

Query: 95  QITPASRGEQAVTLDQLNKTGRSGIRGLVGKANATSPATKFDFSTASRTFRDPNTGIVQT 154
           QI  A+   QAV L Q   TG   + GL G  NA++P T+FD S  +    D ++G    
Sbjct: 111 QIANATASNQAVALGQTFTTGARRMMGLRGNVNASTPLTQFDLSADACVAID-SSGRAYA 169

Query: 155 SYNTSVITVDANLAGPVLNGRDQAGAFTAGSWIYLYALSDGKGSE-GAVFSANPPSVGPN 213
            Y  +  TV+  LAGP++NGRDQ+ AFTA +++++Y + +   +  G + SA  P+VGP 
Sbjct: 170 QYGITTSTVNLALAGPIVNGRDQSAAFTASTFVHIYRIYNPTSNTWGWIASAALPTVGPT 229

Query: 214 NVPGYPYVVLITALYWTSQS-VIRRVVASGNTVYEAAQISI--AASGNTAGSEIAFSTAL 270
              GY      T L W + S ++   V     VY+ A   +    +  TA S  A + + 
Sbjct: 230 LPTGYTAWAYSTTLNWNASSNIVPCFVEGAQVVYDLADAGVNRVLTNGTATSMTAVACSG 289

Query: 271 ACPPIALR 278
             PP A+R
Sbjct: 290 YAPPNAIR 297


>ref|ZP_02360202.1| hypothetical protein BoklE_32312 [Burkholderia oklahomensis EO147]
          Length = 228

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 4   AYSVSNAVPLSALPTTNGVQQQFFAPNTNDGPATFSPDGLSAAPIVGLAGHALQGNEIPA 63
           AY+V+N     A PT +G+       N N G +T + DGL A PI GLA   LQG E+ A
Sbjct: 104 AYAVANMAAFPAYPTVSGLVIDVSIANANTGASTLNVDGLGAKPIYGLALQPLQGGELVA 163

Query: 64  GALVSLSSYIGPLLNSGALCWLLIDCAGGAQQITPASRGEQAVTLDQLNKTGR 116
             +     ++   +N+G   W+L++CAGGAQQ+ PA++ + A+ L Q   TGR
Sbjct: 164 KGVACFLYFVASTVNAGNGAWILMECAGGAQQVAPATQSQHALQLGQ--ATGR 214


>ref|XP_002535548.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF26835.1| conserved hypothetical protein [Ricinus communis]
          Length = 397

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 53/103 (51%)

Query: 12  PLSALPTTNGVQQQFFAPNTNDGPATFSPDGLSAAPIVGLAGHALQGNEIPAGALVSLSS 71
           PL A    +GV Q     + N G +T++PDGL A PI GL    LQG+E+       L  
Sbjct: 100 PLVAGTWVDGVVQAVKIAHANTGASTYAPDGLPAIPIYGLGLQPLQGSELALNGTAILMR 159

Query: 72  YIGPLLNSGALCWLLIDCAGGAQQITPASRGEQAVTLDQLNKT 114
                +NSG    +L++CAGGAQQ+   S+   AV L Q   +
Sbjct: 160 TTIAGVNSGNPICVLMECAGGAQQVVVGSQSNHAVNLGQFGNS 202