BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3868.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_259807.1| hypothetical protein PFL_2700 [Pseudomonas fluo...    86   2e-15
gb|EGH44130.1| hypothetical protein PSYPI_17757 [Pseudomonas syr...    85   3e-15

>ref|YP_259807.1| hypothetical protein PFL_2700 [Pseudomonas fluorescens Pf-5]
 gb|AAY91973.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 144

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 1   MSKLSALIDEARIGLSIQQAIPPAQWDAIAKRCGDREVEEIKERIDALRAELANVEEWDG 60
           MS+L+ALI +A+ GLS+QQ IP  +W+AIA +CG  E+ EIK RI +L+A    VE+WDG
Sbjct: 58  MSQLTALIAQAKAGLSVQQNIPQERWEAIATQCGAAEIAEIKTRIASLKAAREAVEDWDG 117

Query: 61  DTQDEINIAISRFSRLLAL 79
           DT+D++  AI+ F+RLL L
Sbjct: 118 DTRDDLYFAIAHFTRLLEL 136


>gb|EGH44130.1| hypothetical protein PSYPI_17757 [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 83

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 1  MSKLSALIDEARIGLSIQQAIPPAQWDAIAKRCGDREVEEIKERIDALRAELANVEEWDG 60
          MS L  LI  AR GLS+Q+ I    W AIA++CG  E EEI++RI  LRAEL  VEEWDG
Sbjct: 1  MSNLQNLIVNARFGLSVQEKISDEGWQAIARQCGAPEFEEIEQRITRLRAELETVEEWDG 60

Query: 61 DTQDEINIAISRFSRLL 77
          DTQD+I++AIS F+RLL
Sbjct: 61 DTQDDIHLAISSFTRLL 77