BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3867.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_608195.1| hypothetical protein PSEEN2597 [Pseudomonas ent...   103   1e-20
ref|YP_001544826.1| hypothetical protein Haur_2057 [Herpetosipho...    91   8e-17
ref|YP_001815568.1| hypothetical protein BamMC406_5572 [Burkhold...    60   1e-07

>ref|YP_608195.1| hypothetical protein PSEEN2597 [Pseudomonas entomophila L48]
 emb|CAK15397.1| hypothetical protein PSEEN2597 [Pseudomonas entomophila L48]
          Length = 138

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 4/136 (2%)

Query: 1   MNPNLEQALFSISSNQEKSSGDYDE--KALLAVVEEFGLPNLGDRIYTEIPPTVPFELVC 58
           M+P+L+QAL  I  N E++  +Y +   A+  VV  FG  +L +R++ EIP TVP ELV 
Sbjct: 1   MHPSLKQALDII--NIERNVAEYTQAFDAVHDVVSVFGELDLANRLFAEIPRTVPEELVA 58

Query: 59  ILFDLLAWRTDDNGSSVRRATERWLIEGRDERRMLIALHLEAYPFISEKEMVEVLSKLKS 118
            LF+LLAW+T+DNG+++ R  E WL E +D R++ IA+ L+ YPF   +EM +VLS L  
Sbjct: 59  ELFNLLAWQTNDNGAAMTREVETWLREQQDPRKLRIAMSLDVYPFPDAQEMHQVLSTLAV 118

Query: 119 TNPQITHRCAELVRMR 134
             P++   C  L+  R
Sbjct: 119 AIPEVATMCQTLMTSR 134


>ref|YP_001544826.1| hypothetical protein Haur_2057 [Herpetosiphon aurantiacus DSM 785]
 gb|ABX04698.1| conserved hypothetical protein [Herpetosiphon aurantiacus DSM 785]
          Length = 140

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 71/131 (54%)

Query: 5   LEQALFSISSNQEKSSGDYDEKALLAVVEEFGLPNLGDRIYTEIPPTVPFELVCILFDLL 64
           L Q L  I + +     +     +  +V + G   L +R+   I  T P+E+V  LF LL
Sbjct: 6   LAQTLLVIQAERIHGGFNTSSAWVDRLVADAGEEQLAERLDAAIGDTWPWEVVADLFGLL 65

Query: 65  AWRTDDNGSSVRRATERWLIEGRDERRMLIALHLEAYPFISEKEMVEVLSKLKSTNPQIT 124
            W+T DNG+ +   T+ WL EG + RR+ IALH EAYPF    EMV+VL  +    P++ 
Sbjct: 66  TWQTSDNGADLSDTTDDWLREGTNLRRIQIALHGEAYPFHDRAEMVQVLEGIAQRFPEVA 125

Query: 125 HRCAELVRMRN 135
            RC EL+  RN
Sbjct: 126 DRCEELITSRN 136


>ref|YP_001815568.1| hypothetical protein BamMC406_5572 [Burkholderia ambifaria MC40-6]
 gb|ACB68015.1| hypothetical protein BamMC406_5572 [Burkholderia ambifaria MC40-6]
          Length = 141

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 24  DEKALLAVVEEFGL-PNLGDRIYTEIPPTVPFELVCILFDLLAWRTDDNGSSVRRATERW 82
           DE+ L  ++  +G   +L + +++++P     + V  L +L AWRT+DNG  +     +W
Sbjct: 29  DEENLRHLLSMYGENSDLAELLWSDLPENYCLQDVADLLNLWAWRTNDNGQRIMCTLTQW 88

Query: 83  LIEGRDERRMLIALHLEAYPFISEKEMVEVLSKLKSTNPQITHRCAELV 131
           + E  D  ++ +ALH +AYPFI     +E L ++    P +   C  ++
Sbjct: 89  VSECSDFGKVWVALHQDAYPFIERSSRIEHLRRVMRVFPSLRASCEVMI 137