BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3860.p         (163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776604.1| sensory transduction regulatory protein [Her...   204   3e-51
ref|YP_003776129.1| sensory transduction regulatory protein [Her...    90   9e-17
ref|YP_003777359.1| response regulator transcription regulator p...    86   2e-15
emb|CAM74595.1| Response regulator receiver domain protein (CheY...    62   2e-08
ref|YP_001518173.1| response regulator receiver, CheY-like prote...    62   2e-08

>ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64696.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 154

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query: 1   MKPPIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQLPGMI 60
           M+PPIILMIESNGEAVEL RFALWR+NFHCVLQW DEADAAI+GLL R    + +LP +I
Sbjct: 1   MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60

Query: 61  FLDPGMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQ 120
            LDPGMMENNG+DFI AMKAGRDTR++P+VVFPDSDYPPEMP LLEAGA  YLLKPETA 
Sbjct: 61  LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120

Query: 121 QFMEVVVDRAR 131
           Q+M+ VV+ A+
Sbjct: 121 QYMQAVVECAQ 131


>ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64221.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 140

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 1   MKPPIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGE-MQLPGM 59
           M  P ILM++ + E+VEL RF LWRN   C   W ++A+ A + L   +A      LP +
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60

Query: 60  IFLDPGMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETA 119
           I L+P +    GL+ +  ++A   TRA+P+V+F  S    +      AGA +YL+KP  A
Sbjct: 61  ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120

Query: 120 QQFMEVVVDRARRW 133
           + FME+V    RRW
Sbjct: 121 RAFMELVSQTVRRW 134


>ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65451.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 188

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 1   MKPPIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQLPGMI 60
           M  P I+MI+ + EA EL RFALWR   HC  +   +   A   LL  R  G+   P +I
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72

Query: 61  FLDPGMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQ 120
            L+  M   +GL+ ++ ++A       P+VVFP  D   E  A L+AGA  YL KP   +
Sbjct: 73  LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREA-LDAGATAYLPKPIDGE 131

Query: 121 QFMEVVVDRARRW 133
           ++   VV+   RW
Sbjct: 132 RYARCVVEMVERW 144


>emb|CAM74595.1| Response regulator receiver domain protein (CheY) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 148

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 6   ILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQL-PGMIFLDP 64
           IL++E +     L R AL  N F   +  V +   A++ L Q+  +    L P +I LD 
Sbjct: 11  ILLVEDSQVDAHLTRAALEENRFAVSMHHVTDGIEALDYLRQQGQNFTDGLRPDLILLDL 70

Query: 65  GMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQQFME 124
            M   NG +F+ AMKA  +   +P+V+   SD   ++ A  + GA  Y+ KP   +QF+ 
Sbjct: 71  NMPRMNGREFLTAMKADPNLSDIPVVILTTSDVEQDVIASYKLGAAGYVTKPVDLEQFIH 130

Query: 125 VVVDRARRWSKRRR 138
            +      W K  R
Sbjct: 131 AINQLGNYWFKLVR 144


>ref|YP_001518173.1| response regulator receiver, CheY-like protein [Acaryochloris
           marina MBIC11017]
 gb|ABW28856.1| response regulator receiver, CheY-like protein [Acaryochloris
           marina MBIC11017]
          Length = 140

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 65/130 (50%)

Query: 6   ILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQLPGMIFLDPG 65
           +L++E +   +EL +  + R+     L WV +  +A+  LL+     +  LP MI LD  
Sbjct: 3   LLLVEDDLADIELTQNGVQRSQAAIDLDWVVDGQSALSYLLREGEYQQKSLPSMILLDLN 62

Query: 66  MMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQQFMEV 125
           +   +GL  ++ +K     R +P+++F  SD   ++    E GA  ++ KP +  Q++  
Sbjct: 63  LPGIHGLQVLETIKQNDAFRMIPVIIFTTSDADRDIQKAYELGANCFIQKPASLSQYIST 122

Query: 126 VVDRARRWSK 135
           +   +  W+K
Sbjct: 123 ITSISTYWTK 132