BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3857.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776600.1| membrane protein [Herbaspirillum seropedicae... 355 3e-96 ref|YP_003212346.1| hypothetical protein CTU_39830 [Cronobacter ... 278 5e-73 ref|YP_002236158.1| hypothetical protein KPK_0276 [Klebsiella pn... 278 5e-73 ref|ZP_02901102.1| putative membrane protein [Escherichia albert... 277 8e-73 ref|NP_756126.1| hypothetical protein c4264 [Escherichia coli CF... 277 8e-73 >ref|YP_003776600.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64692.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 212/218 (97%), Positives = 216/218 (99%) Query: 1 MTTLDLRRHAALLTWLSLFHLLVITSSNYLVQLPVSIFGLHTTWGAFSFPFIFLATDLTV 60 MTTLDLRRHAALLTWLSLFHLLVITSSNYLVQLPV++FGLHTTWGAFSFPFIFLATDLTV Sbjct: 1 MTTLDLRRHAALLTWLSLFHLLVITSSNYLVQLPVALFGLHTTWGAFSFPFIFLATDLTV 60 Query: 61 RFFGAPLARRIIFAVMLPALFISYGISALFYMGQWQGFGALAHFNVFVARIAAASFMAYV 120 RFFGAPLARRIIFAVMLPALFISYG+SALFYMGQWQGFGALAHFNVFVARIAAASFMAYV Sbjct: 61 RFFGAPLARRIIFAVMLPALFISYGVSALFYMGQWQGFGALAHFNVFVARIAAASFMAYV 120 Query: 121 LGQVLDVQVFNRLRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHWVEIAL 180 LGQVLDVQVFNRLRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHW+EIAL Sbjct: 121 LGQVLDVQVFNRLRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHWIEIAL 180 Query: 181 VDYGFKIAISLLFFLPAYGALMSFLKSWFGRPLAADPA 218 VDYGFKIAISLLFFLPAYGALMS LKSWF RPLAADPA Sbjct: 181 VDYGFKIAISLLFFLPAYGALMSCLKSWFARPLAADPA 218 >ref|YP_003212346.1| hypothetical protein CTU_39830 [Cronobacter turicensis z3032] emb|CBA34307.1| Inner membrane protein yhhQ [Cronobacter turicensis z3032] Length = 221 Score = 278 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 159/199 (79%), Positives = 174/199 (87%), Gaps = 2/199 (1%) Query: 7 RRHAALLTWLSLFHLLVITSSNYLVQLPVSIFGLHTTWGAFSFPFIFLATDLTVRFFGAP 66 RRHA L WLSLFHLLVITSSNYLVQLPVSIFG HTTWGAFSFPFIFLATDLTVR FGAP Sbjct: 9 RRHA--LVWLSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAP 66 Query: 67 LARRIIFAVMLPALFISYGISALFYMGQWQGFGALAHFNVFVARIAAASFMAYVLGQVLD 126 LARRIIFAVM+PAL +SY IS+LFYMG WQGFGAL+HFN+FVARIA ASFMAY LGQ+LD Sbjct: 67 LARRIIFAVMVPALLVSYVISSLFYMGSWQGFGALSHFNLFVARIATASFMAYALGQILD 126 Query: 127 VQVFNRLRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHWVEIALVDYGFK 186 V VFNRLR S WWLAP S++ GN SDT++FF IAFWRS DPFMAEHW+EIALVDY FK Sbjct: 127 VHVFNRLRQSPRWWLAPGASLLLGNVSDTLSFFFIAFWRSPDPFMAEHWMEIALVDYTFK 186 Query: 187 IAISLLFFLPAYGALMSFL 205 + ISL+FFLP YG L++ L Sbjct: 187 VLISLVFFLPMYGVLLNML 205 >ref|YP_002236158.1| hypothetical protein KPK_0276 [Klebsiella pneumoniae 342] ref|YP_003437207.1| hypothetical protein Kvar_0264 [Klebsiella variicola At-22] ref|ZP_06551318.1| hypothetical protein HMPREF0485_03722 [Klebsiella sp. 1_1_55] gb|ACI09208.1| putative membrane protein [Klebsiella pneumoniae 342] gb|ADC56195.1| conserved hypothetical protein [Klebsiella variicola At-22] gb|EFD83740.1| hypothetical protein HMPREF0485_03722 [Klebsiella sp. 1_1_55] Length = 221 Score = 278 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 157/193 (81%), Positives = 170/193 (88%) Query: 13 LTWLSLFHLLVITSSNYLVQLPVSIFGLHTTWGAFSFPFIFLATDLTVRFFGAPLARRII 72 L WLSLFHLLVITSSNYLVQLP+SIFG HTTWGAFSFPFIFLATDLTVR FGAPLARRII Sbjct: 13 LVWLSLFHLLVITSSNYLVQLPISIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRII 72 Query: 73 FAVMLPALFISYGISALFYMGQWQGFGALAHFNVFVARIAAASFMAYVLGQVLDVQVFNR 132 FAVM+PAL ISYGISALFYMG+WQGF AL FN+FVARIA ASFMAY LGQ+LDV VFNR Sbjct: 73 FAVMVPALVISYGISALFYMGEWQGFAALGTFNLFVARIAIASFMAYALGQILDVHVFNR 132 Query: 133 LRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHWVEIALVDYGFKIAISLL 192 LR SRHWWLAP+ S +FGN SDT+AFF IAFWRS DPFMA HW EIALVDY FK+ IS++ Sbjct: 133 LRQSRHWWLAPTASTLFGNISDTVAFFFIAFWRSPDPFMAAHWGEIALVDYSFKVLISII 192 Query: 193 FFLPAYGALMSFL 205 FFLP YG L++ L Sbjct: 193 FFLPMYGVLLNML 205 >ref|ZP_02901102.1| putative membrane protein [Escherichia albertii TW07627] gb|EDS93018.1| putative membrane protein [Escherichia albertii TW07627] Length = 221 Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats. Identities = 159/193 (82%), Positives = 172/193 (89%) Query: 13 LTWLSLFHLLVITSSNYLVQLPVSIFGLHTTWGAFSFPFIFLATDLTVRFFGAPLARRII 72 L WLSLFHLLVITSSNYLVQLPVSIFG HTTWGAFSFPFIFLATDLTVR FGAPLARRII Sbjct: 13 LFWLSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRII 72 Query: 73 FAVMLPALFISYGISALFYMGQWQGFGALAHFNVFVARIAAASFMAYVLGQVLDVQVFNR 132 FAVM+PAL ISY IS+LFYMG WQGFGALAHFN+FVARIA ASFMAY LGQ+LDV VFNR Sbjct: 73 FAVMIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNR 132 Query: 133 LRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHWVEIALVDYGFKIAISLL 192 LR SRHWWLAP+ S +FGN SDT+AFF IAFWRS D FMAEHW+EIALVDY FK+ IS++ Sbjct: 133 LRQSRHWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIV 192 Query: 193 FFLPAYGALMSFL 205 FFLP YG L++ L Sbjct: 193 FFLPMYGVLLNML 205 >ref|NP_756126.1| hypothetical protein c4264 [Escherichia coli CFT073] ref|YP_542947.1| hypothetical protein UTI89_C3987 [Escherichia coli UTI89] ref|YP_671443.1| hypothetical protein ECP_3566 [Escherichia coli 536] ref|YP_859071.1| hypothetical protein APECO1_2983 [Escherichia coli APEC O1] ref|ZP_03032014.1| putative membrane protein [Escherichia coli F11] ref|YP_002331178.1| hypothetical protein E2348C_3712 [Escherichia coli O127:H6 str. E2348/69] ref|YP_002393452.1| hypothetical protein ECS88_3874 [Escherichia coli S88] ref|YP_002399968.1| hypothetical protein ECED1_4144 [Escherichia coli ED1a] ref|YP_002409845.1| hypothetical protein ECIAI39_3952 [Escherichia coli IAI39] ref|ZP_04001422.1| membrane protein [Escherichia coli 83972] ref|ZP_04533699.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] ref|ZP_07177334.1| conserved hypothetical integral membrane protein [Escherichia coli MS 45-1] ref|ZP_07178178.1| conserved hypothetical integral membrane protein [Escherichia coli MS 200-1] ref|ZP_07197193.1| conserved hypothetical integral membrane protein [Escherichia coli MS 185-1] ref|ZP_07450323.1| hypothetical protein ECNC101_06224 [Escherichia coli NC101] ref|ZP_07782426.1| inner membrane protein yhhQ [Escherichia coli 2362-75] ref|ZP_08350364.1| inner membrane protein YhhQ [Escherichia coli M605] ref|ZP_08360705.1| inner membrane protein YhhQ [Escherichia coli TA206] ref|ZP_08385703.1| inner membrane protein YhhQ [Escherichia coli H299] gb|AAN82700.1|AE016768_118 Hypothetical protein yhhQ [Escherichia coli CFT073] gb|ABE09416.1| hypothetical protein YhhQ [Escherichia coli UTI89] gb|ABG71542.1| putative integral membrane protein [Escherichia coli 536] gb|ABJ02947.1| conserved inner membrane protein [Escherichia coli APEC O1] gb|EDV68855.1| putative membrane protein [Escherichia coli F11] emb|CAS11260.1| conserved inner membrane protein [Escherichia coli O127:H6 str. E2348/69] emb|CAR05086.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli S88] emb|CAR20064.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli IAI39] emb|CAR10279.2| conserved hypothetical protein; putative inner membrane protein [Escherichia coli ED1a] emb|CAP77922.1| Inner membrane protein yhhQ [Escherichia coli LF82] gb|EEH88741.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gb|EEJ49962.1| membrane protein [Escherichia coli 83972] dbj|BAI56830.1| conserved hypothetical protein [Escherichia coli SE15] gb|ADE90955.1| putative membrane protein [Escherichia coli IHE3034] gb|EFJ54318.1| conserved hypothetical integral membrane protein [Escherichia coli MS 185-1] gb|EFJ60758.1| conserved hypothetical integral membrane protein [Escherichia coli MS 200-1] gb|EFJ91646.1| conserved hypothetical integral membrane protein [Escherichia coli MS 45-1] gb|EFM51038.1| hypothetical protein ECNC101_06224 [Escherichia coli NC101] gb|ADN48340.1| conserved inner membrane protein [Escherichia coli ABU 83972] gb|ADN72848.1| hypothetical protein UM146_17480 [Escherichia coli UM146] gb|EFR14951.1| inner membrane protein yhhQ [Escherichia coli 2362-75] gb|ADR28851.1| hypothetical protein NRG857_17210 [Escherichia coli O83:H1 str. NRG 857C] gb|EFU45556.1| conserved hypothetical integral membrane protein [Escherichia coli MS 110-3] gb|EFU51030.1| conserved hypothetical integral membrane protein [Escherichia coli MS 153-1] gb|EFU55268.1| conserved hypothetical integral membrane protein [Escherichia coli MS 16-3] gb|EFZ74222.1| inner membrane protein yhhQ [Escherichia coli RN587/1] gb|EGB46022.1| inner membrane protein yhhQ [Escherichia coli H252] gb|EGB50554.1| inner membrane protein yhhQ [Escherichia coli H263] gb|EGB78578.1| conserved hypothetical integral membrane protein [Escherichia coli MS 57-2] gb|EGB83788.1| conserved hypothetical integral membrane protein [Escherichia coli MS 60-1] gb|EGH38026.1| putative preQ0 transporter [Escherichia coli AA86] gb|EGI13920.1| inner membrane protein YhhQ [Escherichia coli M605] gb|EGI25015.1| inner membrane protein YhhQ [Escherichia coli TA206] gb|EGI48700.1| inner membrane protein YhhQ [Escherichia coli H299] gb|AEG38419.1| Hypothetical protein ECNA114_3580 [Escherichia coli NA114] Length = 221 Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats. Identities = 159/193 (82%), Positives = 172/193 (89%) Query: 13 LTWLSLFHLLVITSSNYLVQLPVSIFGLHTTWGAFSFPFIFLATDLTVRFFGAPLARRII 72 L WLSLFHLLVITSSNYLVQLPVSIFG HTTWGAFSFPFIFLATDLTVR FGAPLARRII Sbjct: 13 LFWLSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRII 72 Query: 73 FAVMLPALFISYGISALFYMGQWQGFGALAHFNVFVARIAAASFMAYVLGQVLDVQVFNR 132 FAVM+PAL ISY IS+LFYMG WQGFGALAHFN+FVARIA ASFMAY LGQ+LDV VFNR Sbjct: 73 FAVMIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNR 132 Query: 133 LRASRHWWLAPSVSMIFGNASDTIAFFSIAFWRSSDPFMAEHWVEIALVDYGFKIAISLL 192 LR SRHWWLAP+ S +FGN SDT+AFF IAFWRS D FMAEHW+EIALVDY FK+ IS++ Sbjct: 133 LRQSRHWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIV 192 Query: 193 FFLPAYGALMSFL 205 FFLP YG L++ L Sbjct: 193 FFLPMYGVLLNML 205