BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3856.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776599.1| drug/metabolite transporter (DMT) superfamil... 404 e-110 ref|YP_728468.1| hypothetical protein H16_B0303 [Ralstonia eutro... 380 e-103 ref|YP_298817.1| hypothetical protein Reut_B4623 [Ralstonia eutr... 376 e-102 ref|YP_004388902.1| hypothetical protein Alide2_3039 [Alicycliph... 370 e-100 gb|AEG68109.1| Transporter, drug/metabolite exporter family [Ral... 369 e-100 >ref|YP_003776599.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ64691.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 248/291 (85%), Positives = 267/291 (91%) Query: 1 MNSKKATLIGLSAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASLILMVSVGFPRLSSF 60 MNSKKATL+GL+AVVLWSAIVGLIRGVSEHLGATGGAAAIYTVAS IL+++VG PRL SF Sbjct: 1 MNSKKATLVGLTAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASAILLLTVGMPRLRSF 60 Query: 61 PRRYLVWGSVLFVAYELCLSLSIGYAHTGRQAIEVGMVNYLWPTFTLVAAILFGGQRATL 120 PRRYL WGS+LFV+YELCLSLSIGYA+T RQAIEVGMVNYLWPTFTL AAILFG QRAT Sbjct: 61 PRRYLFWGSLLFVSYELCLSLSIGYANTARQAIEVGMVNYLWPTFTLTAAILFGKQRATW 120 Query: 121 LVVPGFILSMLGICWVLGGNQGLDLPVMLANIQDNPLSYGLAFIGALIWAAYCTVTTRIA 180 L+ PGF+LSMLGICWVLGG+QGLD+ ML NI+DNPLSYGLAF GALIWAAYCTVTTRIA Sbjct: 121 LMAPGFVLSMLGICWVLGGDQGLDVAGMLENIRDNPLSYGLAFAGALIWAAYCTVTTRIA 180 Query: 181 EGRNGVTPFFMLVALALWVKVLLGGHAAELSFSVPALVYLLLAAAAMGLGYAAWNVGILH 240 G NGVTPFFM+VA+ LWVKVL GGH AELS S+PALVYLLLAAAAMGLGYAAWNVGILH Sbjct: 181 AGMNGVTPFFMMVAVVLWVKVLAGGHLAELSMSLPALVYLLLAAAAMGLGYAAWNVGILH 240 Query: 241 GNVTVLAGASYFIPVLSSALSAALLRAPLPPSFWVGAALVCAGSILCWRAT 291 GNVTVLAGASYFIPV SSALSA LLR+PLP +FW+GA LVCAGSILCW AT Sbjct: 241 GNVTVLAGASYFIPVFSSALSALLLRSPLPGAFWIGAGLVCAGSILCWIAT 291 >ref|YP_728468.1| hypothetical protein H16_B0303 [Ralstonia eutropha H16] emb|CAJ95103.1| permease of drug/metabolite transporter [Ralstonia eutropha H16] Length = 314 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 216/298 (72%), Positives = 253/298 (84%), Gaps = 2/298 (0%) Query: 1 MNSK-KATLIGLSAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASLILMVSVGFPRLSS 59 M SK KATLIGL A++LWS+IVGLIRGVSE+LGATGGAA IYTVAS +L+++VGF R+ Sbjct: 1 MQSKSKATLIGLIAILLWSSIVGLIRGVSENLGATGGAAMIYTVASALLLLTVGFVRMQD 60 Query: 60 FPRRYLVWGSVLFVAYELCLSLSIGYAHTGRQAIEVGMVNYLWPTFTLVAAILFGGQRAT 119 FPRRYLVWGS+LFV+YELCLSLSIGYA++ RQAIEVGMVNYLWP+FT++ AI F Q+A Sbjct: 61 FPRRYLVWGSILFVSYELCLSLSIGYANSSRQAIEVGMVNYLWPSFTMLCAIAFNKQKAN 120 Query: 120 LLVVPGFILSMLGICWVLGGNQGLDLPVMLANIQDNPLSYGLAFIGALIWAAYCTVTTRI 179 LL++PGF++++LGICWVLGG+QGLD M NIQDNPLSYGLAF+GALIWAAYCTVT RI Sbjct: 121 LLIIPGFLIAILGICWVLGGDQGLDFAGMAENIQDNPLSYGLAFLGALIWAAYCTVTNRI 180 Query: 180 AEGRNGVTPFFMLVALALWVKVLLGGHAAELSFSVPALVYLLLAAAAMGLGYAAWNVGIL 239 AEGRNG+T FFML ALALW+K + + FS A++YL LAA+AMG GYAAWNVGIL Sbjct: 181 AEGRNGITLFFMLTALALWIK-YFATESGSMEFSYQAVIYLALAASAMGFGYAAWNVGIL 239 Query: 240 HGNVTVLAGASYFIPVLSSALSAALLRAPLPPSFWVGAALVCAGSILCWRATAAGRKK 297 HGNVTVLAGASYFIPVLS+AL+A LLR PL +FW GA++VCAGSILCW AT R K Sbjct: 240 HGNVTVLAGASYFIPVLSAALAAMLLRTPLSIAFWKGASMVCAGSILCWLATRGQRSK 297 >ref|YP_298817.1| hypothetical protein Reut_B4623 [Ralstonia eutropha JMP134] gb|AAZ63973.1| probable transmembrane protein [Ralstonia eutropha JMP134] Length = 328 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 208/296 (70%), Positives = 254/296 (85%), Gaps = 1/296 (0%) Query: 2 NSKKATLIGLSAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASLILMVSVGFPRLSSFP 61 +++KATLIGL A++LWS+IVGLIRGVSE LGATGGAA +Y+VAS++LM++VGF RL FP Sbjct: 17 STRKATLIGLIAILLWSSIVGLIRGVSESLGATGGAAMMYSVASVLLMLTVGFVRLRQFP 76 Query: 62 RRYLVWGSVLFVAYELCLSLSIGYAHTGRQAIEVGMVNYLWPTFTLVAAILFGGQRATLL 121 RRYLVWGS+LFV+YELCLSLSIGY+H+GRQAIEVGMVNYLWP+FT++ AI F Q+A +L Sbjct: 77 RRYLVWGSILFVSYELCLSLSIGYSHSGRQAIEVGMVNYLWPSFTMLCAIAFNKQKANVL 136 Query: 122 VVPGFILSMLGICWVLGGNQGLDLPVMLANIQDNPLSYGLAFIGALIWAAYCTVTTRIAE 181 +VPGF++++LGIC VLGG QGLD+ M+AN++DNPLSYGLA GALIWAAYCTVT RIA Sbjct: 137 IVPGFLIAILGICLVLGGEQGLDVAGMVANVRDNPLSYGLALAGALIWAAYCTVTNRIAG 196 Query: 182 GRNGVTPFFMLVALALWVKVLLGGHAAELSFSVPALVYLLLAAAAMGLGYAAWNVGILHG 241 G+NGVT FFM A+ALW+K G HA ++F+ A++YL LAA+AMG GYAAWNVGILHG Sbjct: 197 GKNGVTLFFMFTAMALWIKYFTGDHAP-MAFTYHAVIYLALAASAMGFGYAAWNVGILHG 255 Query: 242 NVTVLAGASYFIPVLSSALSAALLRAPLPPSFWVGAALVCAGSILCWRATAAGRKK 297 NVTVLAGASYFIPV+S+AL+ LL PL +FW GA+LVCAGS+LCW AT A R+K Sbjct: 256 NVTVLAGASYFIPVISAALAGLLLHIPLSLAFWKGASLVCAGSVLCWLATRAPRRK 311 >ref|YP_004388902.1| hypothetical protein Alide2_3039 [Alicycliphilus denitrificans K601] gb|AEB85386.1| protein of unknown function DUF6 transmembrane [Alicycliphilus denitrificans K601] Length = 302 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 215/296 (72%), Positives = 244/296 (82%), Gaps = 1/296 (0%) Query: 2 NSKKATLIGLSAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASLILMVSVGFPRLSSFP 61 N KATLIGL A+ LWSAIVGLIR VS+HLG TGGAA +Y+VAS+ L++SVG+ L FP Sbjct: 3 NRNKATLIGLVAIFLWSAIVGLIRSVSDHLGPTGGAAMMYSVASVFLLLSVGWVGLREFP 62 Query: 62 RRYLVWGSVLFVAYELCLSLSIGYAHTGRQAIEVGMVNYLWPTFTLVAAILFGGQRATLL 121 RRYL WGS+LFVAYELCLSLSIGYA T RQAIEVGMVNYLWPTFT+VAAILF QRA L Sbjct: 63 RRYLAWGSLLFVAYELCLSLSIGYADTSRQAIEVGMVNYLWPTFTIVAAILFNRQRANFL 122 Query: 122 VVPGFILSMLGICWVLGGNQGLDLPVMLANIQDNPLSYGLAFIGALIWAAYCTVTTRIAE 181 +VPGF+LS++GI WVLGG QG DLP ML N+QDNPLSYGLAF GALIWAAYCTVT RIA Sbjct: 123 IVPGFVLSIIGIGWVLGGEQGFDLPGMLDNVQDNPLSYGLAFAGALIWAAYCTVTARIAC 182 Query: 182 GRNGVTPFFMLVALALWVKVLLGGHAAELSFSVPALVYLLLAAAAMGLGYAAWNVGILHG 241 G+NGVT FF+LV++ALW K L+ G A ++F A+VYL+LAAAAMG GY AWNVGILHG Sbjct: 183 GKNGVTLFFVLVSVALWAKYLVEGGGA-MAFGFEAVVYLVLAAAAMGFGYGAWNVGILHG 241 Query: 242 NVTVLAGASYFIPVLSSALSAALLRAPLPPSFWVGAALVCAGSILCWRATAAGRKK 297 NVT+LAGASYFIPV S+ALS LLR PL +FW GAA+VC G+ILCW AT R K Sbjct: 242 NVTILAGASYFIPVFSAALSMLLLRTPLSLAFWQGAAMVCGGAILCWLATRGPRAK 297 >gb|AEG68109.1| Transporter, drug/metabolite exporter family [Ralstonia solanacearum Po82] Length = 314 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 207/297 (69%), Positives = 249/297 (83%), Gaps = 1/297 (0%) Query: 2 NSKKATLIGLSAVVLWSAIVGLIRGVSEHLGATGGAAAIYTVASLILMVSVGFPRLSSFP 61 N +KATLIGL AV+LWS+IVGLIRGVS+ LGA GGAA +Y+VAS++L S+GF RL P Sbjct: 3 NKRKATLIGLIAVLLWSSIVGLIRGVSQSLGAVGGAAMMYSVASVLLWSSIGFIRLKDVP 62 Query: 62 RRYLVWGSVLFVAYELCLSLSIGYAHTGRQAIEVGMVNYLWPTFTLVAAILFGGQRATLL 121 RRYLVWGS+LFV+YELCLSLSIGYA++ RQAIEVGMVNYLWPTFT+++AI F Q++ L Sbjct: 63 RRYLVWGSLLFVSYELCLSLSIGYANSSRQAIEVGMVNYLWPTFTMLSAIAFNKQKSNFL 122 Query: 122 VVPGFILSMLGICWVLGGNQGLDLPVMLANIQDNPLSYGLAFIGALIWAAYCTVTTRIAE 181 +VPGF++++LGIC VLGG+QGLD+ M ANI+DNPLSYGLAF GALIWAAYCTVT+RIAE Sbjct: 123 IVPGFLVAILGICLVLGGDQGLDIAGMAANIRDNPLSYGLAFSGALIWAAYCTVTSRIAE 182 Query: 182 GRNGVTPFFMLVALALWVKVLLGGHAAELSFSVPALVYLLLAAAAMGLGYAAWNVGILHG 241 G+NG+T FFML ALALW+K G A + +S A++YL LAA+AMG GYAAWNVGILHG Sbjct: 183 GKNGITLFFMLTALALWIKYFATGGGA-MHWSYEAIIYLALAASAMGFGYAAWNVGILHG 241 Query: 242 NVTVLAGASYFIPVLSSALSAALLRAPLPPSFWVGAALVCAGSILCWRATAAGRKKD 298 NVTVLAGASYFIPV S+AL+A LL PL +FW GA++VCAGSILCW AT R ++ Sbjct: 242 NVTVLAGASYFIPVFSAALAATLLHTPLSFAFWRGASMVCAGSILCWLATRGQRSRE 298