BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3854.p         (240 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002536875.1| Protein tonB, putative [Ricinus communis] >g...    92   9e-17
ref|YP_001098674.1| hypothetical protein HEAR0319 [Herminiimonas...    79   5e-13
ref|YP_004754515.1| ferric siderophore transport system, peripla...    79   8e-13
gb|EGH69842.1| TonB [Pseudomonas syringae pv. aceris str. M30227...    78   1e-12
ref|YP_237564.1| TonB, C-terminal [Pseudomonas syringae pv. syri...    77   2e-12

>ref|XP_002536875.1| Protein tonB, putative [Ricinus communis]
 gb|EEF25508.1| Protein tonB, putative [Ricinus communis]
          Length = 416

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 69/87 (79%)

Query: 152 SGVQYLTAPQPVYPAAARRRGDEGEVLLRVLINAQGGVEQIALERSSGIASLDQAAREAV 211
           SGV+Y+ APQPVYP+ ARR G+ G V+LRVLI  +G  EQ+ +++SSG A+LD+A R+AV
Sbjct: 329 SGVEYVRAPQPVYPSIARRMGETGTVMLRVLIGEKGNAEQVTVQKSSGSANLDEAGRQAV 388

Query: 212 QRARFQPYVEQGRAQPAYVVVPIKFQL 238
            RA ++PYVE G+A P YV+VPI FQL
Sbjct: 389 LRALYKPYVEDGKAVPVYVLVPINFQL 415


>ref|YP_001098674.1| hypothetical protein HEAR0319 [Herminiimonas arsenicoxydans]
 emb|CAL60545.1| putative Periplasmic protein TonB [Herminiimonas arsenicoxydans]
          Length = 228

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 18/224 (8%)

Query: 19  LRRAQPALLVLAAHLGLLWLATQMHAWPAPISTPPVPPTVMLALI--ESAPQPPLPATSP 76
           L++  P ++++  H+GL +    + +      T  +P  +  + I  ++AP+P      P
Sbjct: 21  LKKYGPLIVIVVLHIGLFY---ALRSGLVHQVTKSLPTEIFASFITEQAAPEPKPQPAEP 77

Query: 77  HPAAPVRTVPLRPTPMPHPRQAVAPAPAMVTSADTSSAPSAPSAPSAPAAPASAPEAAAA 136
                V+    RPTP P   +A  P+P  +T   T            P      P  AA 
Sbjct: 78  KTVPVVKKQVTRPTPRPVVTEA--PSPQAITETATP-----------PQESKEPPAVAAP 124

Query: 137 PVTPAAPMIRPPVITSGVQYLTAPQPVYPAAARRRGDEGEVLLRVLINAQGGVEQIALER 196
               A      P + SGV Y+ AP+PVYP    R G+EG V LRVLIN +G  E++ +++
Sbjct: 125 SAPAAPAAPATPKMISGVSYINAPRPVYPPLDARMGNEGTVTLRVLINEKGRAERVEVQK 184

Query: 197 SSGIASLDQAAREAVQRARFQPYVEQGRAQPAYVVVPIKFQLTQ 240
           SSG   +D AAR+AV RA F+PY+E GR  PA+ +VPI F L +
Sbjct: 185 SSGSLRMDDAARDAVMRALFKPYLEDGRPAPAFAIVPINFTLNR 228


>ref|YP_004754515.1| ferric siderophore transport system, periplasmic binding protein
           TonB [Collimonas fungivorans Ter331]
 gb|AEK63692.1| Ferric siderophore transport system, periplasmic binding protein
           TonB [Collimonas fungivorans Ter331]
          Length = 226

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 59/131 (45%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 110 DTSSAPSAPSAPS-APAAPASAPEAAAAPVTPAAPMIRPPVITSGVQYLTAPQPVYPAAA 168
           +T+ + +A S P+ AP  P     AAAAP  P A   +P  ITSGV+Y+  P   YPA +
Sbjct: 95  NTTPSETAISVPTPAPQPPQHEEPAAAAPPAPPAAPPQPRTITSGVEYIQPPDVKYPAVS 154

Query: 169 RRRGDEGEVLLRVLINAQGGVEQIALERSSGIASLDQAAREAVQRARFQPYVEQGRAQPA 228
           +R G+EG+ ++RVLIN +G  E++ +++SSG + LD AA++AV RA F+PY+E G+  P 
Sbjct: 155 KRMGEEGKSVIRVLINEKGRAERVEVQKSSGSSRLDDAAKQAVMRALFKPYMEDGKPLPV 214

Query: 229 YVVVPIKFQLT 239
           + +VPI FQL+
Sbjct: 215 FAIVPINFQLS 225


>gb|EGH69842.1| TonB [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 237

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 118 PSAPSAPAAPASAPEAAAAPVTPAAPMIRPPV--ITSGVQYLTAPQPVYPAAARRRGDEG 175
           P   +A +APA+   AAAAPV    P   P    +T GV+Y+  PQP YP  AR  G EG
Sbjct: 113 PVVAAATSAPATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPDYPDRAREEGQEG 172

Query: 176 EVLLRVLINAQGGVEQIALERSSGIASLDQAAREAVQRARFQPYVEQGRAQPAYVVVPIK 235
            V+LRVL++  G    + + RSSG  +LD+A R AV+ A F+P++E+G A   YV+VP++
Sbjct: 173 TVILRVLVDEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLR 232

Query: 236 FQL 238
           FQL
Sbjct: 233 FQL 235


>ref|YP_237564.1| TonB, C-terminal [Pseudomonas syringae pv. syringae B728a]
 gb|AAY39526.1| outer membrane transport energization protein TonB [Pseudomonas
           syringae pv. syringae B728a]
          Length = 237

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 2/123 (1%)

Query: 118 PSAPSAPAAPASAPEAAAAPVTPAAPMIRPPV--ITSGVQYLTAPQPVYPAAARRRGDEG 175
           P   +A +APA+   AAAAPV    P   P    +T GV+Y+  PQP YP +AR  G EG
Sbjct: 113 PVVAAATSAPATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPDYPDSAREEGHEG 172

Query: 176 EVLLRVLINAQGGVEQIALERSSGIASLDQAAREAVQRARFQPYVEQGRAQPAYVVVPIK 235
            V+LRVL++  G    + + RSSG  +LD+A R AV+ A F+P++E+G A   YV+VP++
Sbjct: 173 TVILRVLVDEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLR 232

Query: 236 FQL 238
           FQL
Sbjct: 233 FQL 235