BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3853.p         (244 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774117.1| biopolymer transport transmembrane protein [...   306   2e-81
ref|YP_004754516.1| MotA/TolQ/ExbB proton channel family protein...   305   3e-81
ref|YP_001352054.1| biopolymer transport protein ExbB [Janthinob...   299   2e-79
ref|YP_001098673.1| biopolymer transport ExbB protein [Herminiim...   298   4e-79
ref|ZP_08274158.1| MotA/TolQ/ExbB proton channel family protein ...   290   1e-76

>ref|YP_003774117.1| biopolymer transport transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62209.1| biopolymer transport transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 243

 Score =  306 bits (783), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 170/223 (76%), Positives = 193/223 (86%)

Query: 1   MDASPYGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWE 60
           M+ SPYGL +LW+QGD VTK VA+LL  MS+ASWYVI+TKALQL R R  + AAGH FW+
Sbjct: 1   MEVSPYGLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKALQLLRLRKASAAAGHQFWD 60

Query: 61  AANVAAGITLLGRDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEAS 120
             N+  G+  LG+DNPFA +A AG  A+ HHT H+G L D+L VS+WVTLSLRQAIDEAS
Sbjct: 61  TTNLPEGVATLGQDNPFAEVAKAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEAS 120

Query: 121 ASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTAL 180
             LQ+GMAVLASVGSTAPFVGLFGTVWGIYHALVSIG++GQASIDKVAGPVGEALIMTAL
Sbjct: 121 GKLQAGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTAL 180

Query: 181 GLAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARA 223
           GLAVAIPATFGYNAL+RGNK+ILA+LNK GF+LHALFVTGARA
Sbjct: 181 GLAVAIPATFGYNALVRGNKTILAKLNKFGFDLHALFVTGARA 223


>ref|YP_004754516.1| MotA/TolQ/ExbB proton channel family protein [Collimonas
           fungivorans Ter331]
 gb|AEK63693.1| MotA/TolQ/ExbB proton channel family protein [Collimonas
           fungivorans Ter331]
          Length = 246

 Score =  305 bits (782), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 167/228 (73%), Positives = 194/228 (85%)

Query: 1   MDASPYGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWE 60
           M+ SPYGL ALWSQGD V K+VA+LL  MS+ASWYVI+TKALQ+ R++  AHAAGH FW+
Sbjct: 1   MEVSPYGLEALWSQGDFVIKSVAVLLVAMSIASWYVILTKALQILRFQRAAHAAGHQFWD 60

Query: 61  AANVAAGITLLGRDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEAS 120
             ++  GI  LG +NPFA +A AG  ++ HH  H+G L D+L VS+WVTLSLRQAIDE S
Sbjct: 61  TTSLPEGIATLGTENPFAEVAQAGVSSMRHHAAHKGHLHDQLSVSDWVTLSLRQAIDEVS 120

Query: 121 ASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTAL 180
             LQ+GMAVLASVGSTAPFVGLFGTVWGIYHALVSIG+SGQASIDKVAGPVGEALIMTAL
Sbjct: 121 GKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTSGQASIDKVAGPVGEALIMTAL 180

Query: 181 GLAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARADSASA 228
           GLAVAIPATFGYNAL+RGNK+I+A+LNK GF+LHALFVTG+R+ S  A
Sbjct: 181 GLAVAIPATFGYNALVRGNKTIIAKLNKFGFDLHALFVTGSRSSSNEA 228


>ref|YP_001352054.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille]
 gb|ABR90101.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille]
          Length = 242

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 167/227 (73%), Positives = 192/227 (84%)

Query: 1   MDASPYGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWE 60
           M+ SPYGL +LWSQGD VTK VA+LL  MS+ASWYVI TKALQL +YR  A AAGH FW+
Sbjct: 1   MEVSPYGLESLWSQGDFVTKGVAVLLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWD 60

Query: 61  AANVAAGITLLGRDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEAS 120
           A ++  G   LG  NPFA +A AG  A+ HH  H+G L D+L VS+W+TLSLRQAIDE S
Sbjct: 61  ATSLTEGTATLGNGNPFADIAEAGVTAMRHHEAHKGHLHDQLSVSDWITLSLRQAIDETS 120

Query: 121 ASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTAL 180
           A LQSGMAVLASVGSTAPFVGLFGTVWGIYHALV+IG+SGQASIDKVAGPVGEALIMTAL
Sbjct: 121 AKLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTAL 180

Query: 181 GLAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARADSAS 227
           GLAVAIPATFGYNAL+RGNKS++A++NK GF+LHALFVTG+RA+  +
Sbjct: 181 GLAVAIPATFGYNALVRGNKSVIAKMNKFGFDLHALFVTGSRANDTN 227


>ref|YP_001098673.1| biopolymer transport ExbB protein [Herminiimonas arsenicoxydans]
 emb|CAL60544.1| Biopolymer transport exbB protein [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  298 bits (763), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 167/227 (73%), Positives = 193/227 (85%)

Query: 1   MDASPYGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWE 60
           M+ SPYGL +LWSQGD VTK VA+LL  MS+ASWYVI TKALQL +YR  A AAGH FW+
Sbjct: 1   MEVSPYGLESLWSQGDFVTKGVAILLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWD 60

Query: 61  AANVAAGITLLGRDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEAS 120
           A +++ G   LG  NPFA++A AG  A+ HH  H+G L D L VS+W+TLSLRQAIDE S
Sbjct: 61  ATSLSEGTATLGSGNPFASIAEAGVTAMRHHEAHKGHLHDELSVSDWITLSLRQAIDETS 120

Query: 121 ASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTAL 180
           A LQ+GMAVLASVGSTAPFVGLFGTVWGIYHALV+IG+SGQASIDKVAGPVGEALIMTAL
Sbjct: 121 AKLQTGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTAL 180

Query: 181 GLAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARADSAS 227
           GLAVAIPATFGYNAL+RGNKS++A++NK GF+LHALFVTGARA+  +
Sbjct: 181 GLAVAIPATFGYNALVRGNKSLIAKMNKFGFDLHALFVTGARANDTN 227


>ref|ZP_08274158.1| MotA/TolQ/ExbB proton channel family protein [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32371.1| MotA/TolQ/ExbB proton channel family protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 238

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 160/223 (71%), Positives = 186/223 (83%)

Query: 1   MDASPYGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWE 60
           M+ SPYGL +LW QGD+V KAVALLL  MS+ASW+VI+T+ +QL R R  A   G  FW+
Sbjct: 1   MEVSPYGLESLWQQGDIVIKAVALLLIAMSVASWFVIITRGVQLLRLRRSAALVGLRFWD 60

Query: 61  AANVAAGITLLGRDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEAS 120
           A+++A G+  LGRDNPFA LA AG  A+ HH THQG L D+L  S+WVT+SLRQ ID+A+
Sbjct: 61  ASSMAQGVERLGRDNPFAELAQAGSAAMAHHATHQGHLHDQLSKSDWVTMSLRQGIDDAA 120

Query: 121 ASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTAL 180
             LQ GMAVLASVGSTAPFVGLFGTVWGIYHALV+IG+SGQA IDKVAGPVGE+LIMTAL
Sbjct: 121 GRLQQGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQAGIDKVAGPVGESLIMTAL 180

Query: 181 GLAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARA 223
           GLAVAIPATFGYNAL+RGNKS LA+LNK GF+LHA FVTGAR+
Sbjct: 181 GLAVAIPATFGYNALVRGNKSTLAQLNKFGFDLHAWFVTGARS 223