BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3849.p (516 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776597.1| oxygen-independent coproporphyrinogen III ox... 892 0.0 ref|ZP_08273385.1| Coproporphyrinogen III oxidase, oxygen-indepe... 671 0.0 ref|YP_001353317.1| oxygen-independent coproporphyrinogen III ox... 659 0.0 ref|YP_001099933.1| coproporphyrinogen dehydrogenase [Herminiimo... 658 0.0 emb|CAL61807.2| Oxygen-independent coproporphyrinogen III oxidas... 648 0.0 >ref|YP_003776597.1| oxygen-independent coproporphyrinogen III oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ64689.1| oxygen-independent coproporphyrinogen III oxidase protein [Herbaspirillum seropedicae SmR1] Length = 483 Score = 892 bits (2305), Expect = 0.0, Method: Composition-based stats. Identities = 443/483 (91%), Positives = 455/483 (94%), Gaps = 9/483 (1%) Query: 43 MQVAHPSILHPSASLAGMNKAVLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRN 102 MQVAHPS L SASLAGMNK+VLR+MDQRGPRYTSYPTADRF+SDFAVTDYLHAVSDRR+ Sbjct: 1 MQVAHPSTLQSSASLAGMNKSVLRRMDQRGPRYTSYPTADRFTSDFAVTDYLHAVSDRRS 60 Query: 103 MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 162 MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV Sbjct: 61 MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120 Query: 163 EQLHFGGGTPTYLSDEQMSDLMNHIRHSFTLAPDHVGEYSIEIDPRTVSVARVHKLREQG 222 EQLHFGGGTPTYLSDEQMSDLM+HIRH FTLAPDHVGEYSIEIDPRTVSV RVHKLR+QG Sbjct: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAPDHVGEYSIEIDPRTVSVERVHKLRQQG 180 Query: 223 FNRISLGVQDFDPLVQLAVNRVQPEHLTLDIIKAARAQRFRSVSIDLIYGLPKQNVMSMS 282 FNRISLGVQDFDP VQLAVNRVQ E TL+II+AAR FRSVSIDLIYGLPKQNVMSMS Sbjct: 181 FNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIRAARDAGFRSVSIDLIYGLPKQNVMSMS 240 Query: 283 RTLAKVIAASPDRIAVYNYAHMPALFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYV 342 RTLAKVIAASPDRIAVYNYAHMP LFKTQRQIKEEDLPSADSKLDMLSLCIRQLT AGYV Sbjct: 241 RTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTSAGYV 300 Query: 343 YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTL 402 YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTL Sbjct: 301 YIGMDHFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTL 360 Query: 403 DGYYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFAPE 462 D YYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFA E Sbjct: 361 DDYYARLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFASE 420 Query: 463 MEKLKQLEEDGLINIEPEWITVEPKGRLLIRNICMVFDRYL---------QSRPAEQRYS 513 MEKLKQLEEDGLI IEPEWITVEPKGRLLIRNICMVFDRYL Q++ A QRYS Sbjct: 421 MEKLKQLEEDGLIKIEPEWITVEPKGRLLIRNICMVFDRYLNQEREKAASQNKDAPQRYS 480 Query: 514 RTI 516 +T+ Sbjct: 481 QTV 483 >ref|ZP_08273385.1| Coproporphyrinogen III oxidase, oxygen-independent [Oxalobacteraceae bacterium IMCC9480] gb|EGF33150.1| Coproporphyrinogen III oxidase, oxygen-independent [Oxalobacteraceae bacterium IMCC9480] Length = 471 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 322/456 (70%), Positives = 371/456 (81%) Query: 61 NKAVLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRNMSAWRALSLYLHIPFCDT 120 + ++ K Q+GPRYTSYP ADRF+ F DYL AV+ R + LSLYLHIPFCDT Sbjct: 16 DAVLIGKFRQQGPRYTSYPPADRFTDAFRYRDYLQAVAGLRTRGGRKPLSLYLHIPFCDT 75 Query: 121 ICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHFGGGTPTYLSDEQM 180 +CYYCACNKIVTK KAA YL+YLKREI MQG LF+ MN VEQ+H GGGTPTY SD QM Sbjct: 76 VCYYCACNKIVTKKVEKAATYLTYLKREIEMQGQLFADMNLVEQVHLGGGTPTYFSDAQM 135 Query: 181 SDLMNHIRHSFTLAPDHVGEYSIEIDPRTVSVARVHKLREQGFNRISLGVQDFDPLVQLA 240 +LM H+R F LAPD VGEYSIE+DPRTVS RV LR QGFNRISLGVQDFDP VQ A Sbjct: 136 GELMAHVRRWFKLAPDDVGEYSIEVDPRTVSRERVFTLRGQGFNRISLGVQDFDPEVQKA 195 Query: 241 VNRVQPEHLTLDIIKAARAQRFRSVSIDLIYGLPKQNVMSMSRTLAKVIAASPDRIAVYN 300 VNR+QPE TL II+AAR FRSVSIDLIYGLPKQNVM+M++TLAKVIAA+PDRIA+YN Sbjct: 196 VNRIQPESETLAIIQAARDANFRSVSIDLIYGLPKQNVMTMAQTLAKVIAANPDRIAIYN 255 Query: 301 YAHMPALFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYVYIGMDHFAKPTDDLAIAQ 360 YAH+P +FK QR+I + DLP+ ++KLDML+LCIR+LT AGYVYIGMDHFA+PTDDLAIAQ Sbjct: 256 YAHLPHVFKPQRRISDTDLPAGETKLDMLALCIRRLTEAGYVYIGMDHFARPTDDLAIAQ 315 Query: 361 QQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTLDGYYARLENSTLPIARGI 420 QGRLHRNFQGYSTH+E DLV+CGVSAISAV +YSQN KTLD YYA L+ + LPIARGI Sbjct: 316 AQGRLHRNFQGYSTHAELDLVSCGVSAISAVAATYSQNVKTLDAYYAHLDKNELPIARGI 375 Query: 421 QLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFAPEMEKLKQLEEDGLINIEPE 480 +LGMDD+LRR IIQ LMCNFE+SI S+E AYPI YFA E+ +L+ L +DGL+ I+ E Sbjct: 376 KLGMDDILRRAIIQTLMCNFEMSIASIEQAYPITVASYFAAELVQLQTLAQDGLLTIDDE 435 Query: 481 WITVEPKGRLLIRNICMVFDRYLQSRPAEQRYSRTI 516 WI+V PKGRLLIRNICMVFDRYL + P RYS+TI Sbjct: 436 WISVTPKGRLLIRNICMVFDRYLNATPDPLRYSKTI 471 >ref|YP_001353317.1| oxygen-independent coproporphyrinogen III oxidase [Janthinobacterium sp. Marseille] gb|ABR88950.1| oxygen-independent coproporphyrinogen III oxidase [Janthinobacterium sp. Marseille] Length = 487 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 317/475 (66%), Positives = 375/475 (78%), Gaps = 9/475 (1%) Query: 51 LHPSASLAGMNKAVLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRNMSAWRALS 110 L P + A++RK+ + GPRYTSYPTADRF+++F DYL AV+ LS Sbjct: 13 LLPVTQTVEFDTALIRKLSRLGPRYTSYPTADRFNAEFGYRDYLQAVTGATARGNMHPLS 72 Query: 111 LYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHFGGG 170 LY+HIPFC++ICYYC CNKIVTK+R+KAA YL YLKREI MQG L +G NQVEQLHFGGG Sbjct: 73 LYIHIPFCESICYYCGCNKIVTKDRSKAANYLVYLKREIEMQGKLLAGSNQVEQLHFGGG 132 Query: 171 TPTYLSDEQMSDLMNHIRHSFTLAPDHVGEYSIEIDPRTVSVARVHKLREQGFNRISLGV 230 TPTYL+D QM +LM H+R F+ APD GEYSIE+DPRTV+ RVH LR QGFNRISLGV Sbjct: 133 TPTYLTDAQMGELMLHLRRWFSFAPDAEGEYSIEVDPRTVTPERVHGLRRQGFNRISLGV 192 Query: 231 QDFDPLVQLAVNRVQPEHLTLDIIKAARAQRFRSVSIDLIYGLPKQNVMSMSRTLAKVIA 290 QDFD VQ AVNR+QPE T+ I+ AARA FRSVSIDLIYGLPKQN+ +M +TL KVIA Sbjct: 193 QDFDAEVQKAVNRIQPESETVAIMDAARAAGFRSVSIDLIYGLPKQNLHTMEQTLEKVIA 252 Query: 291 ASPDRIAVYNYAHMPALFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYVYIGMDHFA 350 A+PDRIA+YNYAHMP LFK QR+I E DLP ++KL+ML+LCI++L AGY+YIGMDHFA Sbjct: 253 ANPDRIAIYNYAHMPHLFKPQRRIAEADLPDGETKLEMLALCIQRLNDAGYIYIGMDHFA 312 Query: 351 KPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTLDGYYARLE 410 KP DDLAIAQ+QGRLHRNFQGYSTH DLV+CGVSAISA+G +YSQN KTLD YY +E Sbjct: 313 KPGDDLAIAQRQGRLHRNFQGYSTHVGADLVSCGVSAISAIGATYSQNVKTLDEYYEHIE 372 Query: 411 NSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFAPEMEKLKQLE 470 + LPIARGI+L MDD+LRR+IIQ LMCNFELSI S+E+AYPIVF YF E+ KL++LE Sbjct: 373 QNELPIARGIKLNMDDLLRRIIIQMLMCNFELSIASIELAYPIVFNSYFEAELRKLRELE 432 Query: 471 EDGLINIEPEWITVEPKGRLLIRNICMVFDRYLQSRPAEQ---------RYSRTI 516 + GL++I+ EWITV PKGRLLIRNICMVFDRYL + + RYS+TI Sbjct: 433 QSGLLSIDEEWITVTPKGRLLIRNICMVFDRYLDAARDTKAADGATQPLRYSKTI 487 >ref|YP_001099933.1| coproporphyrinogen dehydrogenase [Herminiimonas arsenicoxydans] emb|CAL61808.1| Oxygen-independent coproporphyrinogen III oxidase (Coproporphyrinogenase) (Coprogen oxidase) [Herminiimonas arsenicoxydans] Length = 476 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 317/457 (69%), Positives = 373/457 (81%), Gaps = 4/457 (0%) Query: 64 VLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRNMSAWRALSLYLHIPFCDTICY 123 ++RK++Q GPRYTSYPTADRFS F + DY AV+ R + RALSLYLHIPFC+T+CY Sbjct: 20 LIRKLNQLGPRYTSYPTADRFSGAFGIADYERAVAGVRAKTEKRALSLYLHIPFCNTVCY 79 Query: 124 YCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHFGGGTPTYLSDEQMSDL 183 YC CNKIVT++R+KA YL YLKRE++MQG LF+GMNQ+EQLHFGGGTPTYLSDEQM DL Sbjct: 80 YCGCNKIVTRDRSKAVTYLDYLKREVAMQGRLFAGMNQIEQLHFGGGTPTYLSDEQMDDL 139 Query: 184 MNHIRHSFTLAPDHVGEYSIEIDPRTVSVARVHKLREQGFNRISLGVQDFDPLVQLAVNR 243 M H+R FT APD VGEYSIEIDPRTVS R+H LR QGFNR+SLGVQDFDP+VQ AVNR Sbjct: 140 MAHLRRWFTFAPDAVGEYSIEIDPRTVSRERIHTLRRQGFNRLSLGVQDFDPVVQKAVNR 199 Query: 244 VQPEHLTLDIIKAARAQRFRSVSIDLIYGLPKQNVMSMSRTLAKVIAASPDRIAVYNYAH 303 +QPE TLDII AARA FRSVS+DLIYGLPKQ + ++ +TL KVIAA PDRIA+YNYAH Sbjct: 200 IQPEQQTLDIIAAARAADFRSVSVDLIYGLPKQTLTTIGQTLDKVIAADPDRIAIYNYAH 259 Query: 304 MPALFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYVYIGMDHFAKPTDDLAIAQQQG 363 MP LFK QR+I EEDLP AD+KL+ML LCIR+L A Y+YIGMDHFAKP DDLA+AQ++G Sbjct: 260 MPHLFKPQRRIAEEDLPDADTKLEMLFLCIRRLNEAAYIYIGMDHFAKPGDDLAVAQREG 319 Query: 364 RLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTLDGYYARLENSTLPIARGIQLG 423 RLHRNFQGYSTH+E DLV+CGVSAISA+G +YSQN KTLD YY ++ + LP+ RGI+L Sbjct: 320 RLHRNFQGYSTHAEADLVSCGVSAISAIGPTYSQNVKTLDVYYDHIDRNELPVVRGIELK 379 Query: 424 MDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFAPEMEKLKQLEEDGLINIEPEWIT 483 DD+LRR +IQRLMCNFELSI + Y I F YFAPE+EKL+ ++EDGLI ++ +W+ Sbjct: 380 ADDLLRRQLIQRLMCNFELSIADIAQTYQIDFASYFAPELEKLRVMQEDGLITLDEDWLR 439 Query: 484 VEPKGRLLIRNICMVFDRYL-QSRPAEQ---RYSRTI 516 V KGRLLIRNICM FD YL Q R AE RYS+TI Sbjct: 440 VTLKGRLLIRNICMTFDTYLNQKRAAEPEPLRYSKTI 476 >emb|CAL61807.2| Oxygen-independent coproporphyrinogen III oxidase (Coproporphyrinogenase) (Coprogen oxidase) [Herminiimonas arsenicoxydans] Length = 485 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 301/458 (65%), Positives = 374/458 (81%), Gaps = 3/458 (0%) Query: 48 PSILHPSASLAGMNKAVLRKMDQRGPRYTSYPTADRFSSDFAVTDYLHAVSDRRNMSAWR 107 P+ +PS + +++RK+ Q GPRYTSYPTAD FS F+ DYL V R Sbjct: 7 PATGNPSLEF---DASLVRKLIQLGPRYTSYPTADSFSDAFSYRDYLQTVVGLRTRGGMW 63 Query: 108 ALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQVEQLHF 167 LSLY+HIPFC+++C+YC+CNK+VT++R+KAA YLSYLK EI MQG+LF+GMNQ+E+LH Sbjct: 64 PLSLYVHIPFCESVCHYCSCNKVVTRDRSKAATYLSYLKHEIEMQGNLFAGMNQIEKLHI 123 Query: 168 GGGTPTYLSDEQMSDLMNHIRHSFTLAPDHVGEYSIEIDPRTVSVARVHKLREQGFNRIS 227 GGGTPTYL+D QM +LM H+R F A D GEY+IE+DPRTV+V R+H LR+QGFNRIS Sbjct: 124 GGGTPTYLNDAQMGELMAHLRRHFRFASDFDGEYAIEVDPRTVTVERIHALRKQGFNRIS 183 Query: 228 LGVQDFDPLVQLAVNRVQPEHLTLDIIKAARAQRFRSVSIDLIYGLPKQNVMSMSRTLAK 287 +GVQDFDP VQ AVNR+Q E TL+II+AAR FRSVSIDLIYGLPKQNV++M++TL K Sbjct: 184 IGVQDFDPDVQQAVNRIQSEQDTLNIIRAAREACFRSVSIDLIYGLPKQNVITMAQTLNK 243 Query: 288 VIAASPDRIAVYNYAHMPALFKTQRQIKEEDLPSADSKLDMLSLCIRQLTGAGYVYIGMD 347 VI ASPDRIAVYNY H P +FK QR+I E+DLPS D++L+M SLCIR+LT AGYVYIGMD Sbjct: 244 VINASPDRIAVYNYVHRPNMFKPQRRIDEDDLPSLDARLNMFSLCIRRLTDAGYVYIGMD 303 Query: 348 HFAKPTDDLAIAQQQGRLHRNFQGYSTHSETDLVACGVSAISAVGGSYSQNEKTLDGYYA 407 HFAKP+DDLAIAQ+QGRLHRNFQGYS+H+E +LVA GVS ISAV +YS+N KTLD YY Sbjct: 304 HFAKPSDDLAIAQRQGRLHRNFQGYSSHAEHNLVAFGVSGISAVAATYSENAKTLDEYYE 363 Query: 408 RLENSTLPIARGIQLGMDDVLRRLIIQRLMCNFELSINSLEIAYPIVFREYFAPEMEKLK 467 R+E + LPI G++L MDD+LRR+IIQ LMCNFELSI+S+E+AYPI F+ YFA E++KL Sbjct: 364 RIEQNELPIVTGVKLSMDDLLRRIIIQMLMCNFELSIDSIELAYPITFKTYFAAELDKLH 423 Query: 468 QLEEDGLINIEPEWITVEPKGRLLIRNICMVFDRYLQS 505 +LE++GL+ ++ EWI+V PKGRLLIRN+CMVFDRYL + Sbjct: 424 ELEDNGLVTVDDEWISVTPKGRLLIRNVCMVFDRYLNT 461