BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3844.p (497 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I tra... 824 0.0 emb|CAL61802.2| Cytochrome c oxidase cbb3-type, subunit 1 [Hermi... 728 0.0 ref|ZP_08276119.1| Cytochrome c oxidase subunit CcoN [Oxalobacte... 726 0.0 ref|YP_001099927.1| cbb3-type cytochrome c oxidase subunit I [He... 720 0.0 ref|YP_001353321.1| cb-type cytochrome c oxidase subunit I [Jant... 719 0.0 >ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64685.1| cbb3-type cytochrome c oxidase, subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 824 bits (2129), Expect = 0.0, Method: Composition-based stats. Identities = 463/475 (97%), Positives = 474/475 (99%) Query: 23 VSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGIPWLSFGRLRPLHTN 82 +SKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMG+PWLSFGRLRPLHTN Sbjct: 1 MSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 Query: 83 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAITLPMGLTRGKE 142 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAI+LP+GLTRGKE Sbjct: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 Query: 143 YAELEWPITILIAVVWVAYAVVFFGTLVKRKVKHIYVANWFYGAFIIAVAILHIVNGMTM 202 YAELEWP+TILIAVVWVAYAVVFFGTL+KRKV+HIYVANWFYGAFIIAVAILHIVNGMTM Sbjct: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 Query: 203 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 262 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV Sbjct: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 Query: 263 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTMSGAWHQLR 322 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMT+SGAWHQLR Sbjct: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 Query: 323 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 382 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM Sbjct: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 Query: 383 YYLIPRLSGKTEMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYS 442 YYLIPRLSGKT+MWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTY+ Sbjct: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 Query: 443 FVEGVKATYPYYIIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 497 FVE VKATYPYY+IRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH Sbjct: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 >emb|CAL61802.2| Cytochrome c oxidase cbb3-type, subunit 1 [Herminiimonas arsenicoxydans] Length = 483 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 390/477 (81%), Positives = 428/477 (89%) Query: 19 GESFVSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGIPWLSFGRLRP 78 GES V +YNY +V+QF +AT++WGV+GMLVGV IAAQLAWP LN I WLS+GRLRP Sbjct: 5 GESSVDTALNYNYKIVKQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRP 64 Query: 79 LHTNAVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAITLPMGLT 138 LHTN VIFAFG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV+V A ITLPMG T Sbjct: 65 LHTNGVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVLAVITLPMGWT 124 Query: 139 RGKEYAELEWPITILIAVVWVAYAVVFFGTLVKRKVKHIYVANWFYGAFIIAVAILHIVN 198 R KEYAELEWPITILI +VWVAYAVVFFGT+VKRKV HIYVANWF+G +IIAVA+LHIVN Sbjct: 125 RAKEYAELEWPITILITIVWVAYAVVFFGTIVKRKVAHIYVANWFFGGYIIAVALLHIVN 184 Query: 199 GMTMPATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYR 258 G++MPA++ KSYS YSG QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYR Sbjct: 185 GISMPASIGKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYR 244 Query: 259 LSIVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTMSGAW 318 LSIVHFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMT+SGAW Sbjct: 245 LSIVHFWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGMMTLSGAW 304 Query: 319 HQLRTDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVT 378 H+LR+DPILKFL+VSLSFYGM+TFEGPMM+IKTVNALSHYTDW I HVH+GALGWVGF+T Sbjct: 305 HKLRSDPILKFLIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHAGALGWVGFIT 364 Query: 379 MGAMYYLIPRLSGKTEMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGT 438 MG++YYLIPRLSGK EMWS LIE HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGT Sbjct: 365 MGSIYYLIPRLSGKKEMWSTRLIETHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGT 424 Query: 439 LTYSFVEGVKATYPYYIIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNA 495 LTY+FVE VKATYPYY+IR GG++YLSGML+MAYNTW TMR +E A IP V A Sbjct: 425 LTYTFVESVKATYPYYVIRFTGGVLYLSGMLLMAYNTWMTMRDSEAVHARIPDVVAA 481 >ref|ZP_08276119.1| Cytochrome c oxidase subunit CcoN [Oxalobacteraceae bacterium IMCC9480] gb|EGF30408.1| Cytochrome c oxidase subunit CcoN [Oxalobacteraceae bacterium IMCC9480] Length = 475 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 383/467 (82%), Positives = 429/467 (91%) Query: 26 ENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGIPWLSFGRLRPLHTNAVI 85 E +YNY VV+QFT+AT++WGV+GMLVGVIIAAQLAWP LN IPWL++GRLRPLHTNAVI Sbjct: 4 ELNYNYKVVKQFTIATVVWGVIGMLVGVIIAAQLAWPALNFDIPWLTYGRLRPLHTNAVI 63 Query: 86 FAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAITLPMGLTRGKEYAE 145 FAFG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV++ A I+LP+G TRGKEYAE Sbjct: 64 FAFGICGLFATSYYVVQRTCQVRLFSDGLAAFTFWGWQLVLICATISLPLGFTRGKEYAE 123 Query: 146 LEWPITILIAVVWVAYAVVFFGTLVKRKVKHIYVANWFYGAFIIAVAILHIVNGMTMPAT 205 LEWPI +LI VVWVAYAVVFFGTLVKRKVKHIYVANWF+GAFI+AVAILHIVNG +MPA+ Sbjct: 124 LEWPIALLITVVWVAYAVVFFGTLVKRKVKHIYVANWFFGAFILAVAILHIVNGASMPAS 183 Query: 206 LTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFW 265 TKSYS YSG QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIVHFW Sbjct: 184 FTKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFW 243 Query: 266 ALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTMSGAWHQLRTDP 325 ALIFTYMWAGPHHLHYTALPDWTQSL +VFSLILLAPSWGGMING+MT+SGAWH+LR+DP Sbjct: 244 ALIFTYMWAGPHHLHYTALPDWTQSLAVVFSLILLAPSWGGMINGIMTLSGAWHKLRSDP 303 Query: 326 ILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYL 385 ILKF++VSLSFYGMSTFEGPMM+IKT+N+LSHYTDWTI HVHSGALGWVGF+TMG++YYL Sbjct: 304 ILKFMIVSLSFYGMSTFEGPMMSIKTINSLSHYTDWTIAHVHSGALGWVGFITMGSIYYL 363 Query: 386 IPRLSGKTEMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYSFVE 445 IPRLSGK MWS L++ HFWVATIG+VLYI++MWIAGVMQGLMWRAVNADGTLTYSFVE Sbjct: 364 IPRLSGKNAMWSPRLVDTHFWVATIGVVLYISSMWIAGVMQGLMWRAVNADGTLTYSFVE 423 Query: 446 GVKATYPYYIIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAV 492 GVKATYPYY+IR+ GGL+Y SGM++MA+NT+ TMR A IP++ Sbjct: 424 GVKATYPYYVIRVSGGLLYFSGMVMMAFNTFMTMRDGTAVEARIPSL 470 >ref|YP_001099927.1| cbb3-type cytochrome c oxidase subunit I [Herminiimonas arsenicoxydans] Length = 475 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 386/468 (82%), Positives = 424/468 (90%) Query: 28 SYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGIPWLSFGRLRPLHTNAVIFA 87 +YNY +V+QF +AT++WGV+GMLVGV IAAQLAWP LN I WLS+GRLRPLHTN VIFA Sbjct: 6 NYNYKIVKQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTNGVIFA 65 Query: 88 FGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAITLPMGLTRGKEYAELE 147 FG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV+V A ITLPMG TR KEYAELE Sbjct: 66 FGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVLAVITLPMGWTRAKEYAELE 125 Query: 148 WPITILIAVVWVAYAVVFFGTLVKRKVKHIYVANWFYGAFIIAVAILHIVNGMTMPATLT 207 WPITILI +VWVAYAVVFFGT+VKRKV HIYVANWF+G +IIAVA+LHIVNG++MPA++ Sbjct: 126 WPITILITIVWVAYAVVFFGTIVKRKVAHIYVANWFFGGYIIAVALLHIVNGISMPASIG 185 Query: 208 KSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFWAL 267 KSYS YSG QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIVHFWAL Sbjct: 186 KSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFWAL 245 Query: 268 IFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTMSGAWHQLRTDPIL 327 IFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMT+SGAWH+LR+DPIL Sbjct: 246 IFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGMMTLSGAWHKLRSDPIL 305 Query: 328 KFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYLIP 387 KFL+VSLSFYGM+TFEGPMM+IKTVNALSHYTDW I HVH+GALGWVGF+TMG++YYLIP Sbjct: 306 KFLIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHAGALGWVGFITMGSIYYLIP 365 Query: 388 RLSGKTEMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYSFVEGV 447 RLSGK EMWS LIE HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGTLTY+FVE V Sbjct: 366 RLSGKKEMWSTRLIETHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYTFVESV 425 Query: 448 KATYPYYIIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNA 495 KATYPYY+IR GG++YLSGML+MAYNTW TMR +E A IP V A Sbjct: 426 KATYPYYVIRFTGGVLYLSGMLLMAYNTWMTMRDSEAVHARIPDVVAA 473 >ref|YP_001353321.1| cb-type cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] gb|ABR88525.1| cb-type cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] Length = 474 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 389/470 (82%), Positives = 427/470 (90%), Gaps = 2/470 (0%) Query: 28 SYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGIPWLSFGRLRPLHTNAVIFA 87 +YNY VVRQF +AT++WGV+GMLVGV IAAQLAWP LN I WLS+GRLRPLHTN VIFA Sbjct: 6 NYNYKVVRQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTNGVIFA 65 Query: 88 FGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAITLPMGLTRGKEYAELE 147 FG C L ATSYYVVQRTCQVRL SD LAAFTFWGWQLV+V A ITLPMG TRGKEYAELE Sbjct: 66 FGICGLFATSYYVVQRTCQVRLSSDKLAAFTFWGWQLVLVLAVITLPMGWTRGKEYAELE 125 Query: 148 WPITILIAVVWVAYAVVFFGTLVKRKVKHIYVANWFYGAFIIAVAILHIVNGMTMPATLT 207 WPI ILI +VWVAYAVVFFGTL+KRKV+HIYVANWF+GA+IIAVA+LHIVNG MPA+L Sbjct: 126 WPIAILITIVWVAYAVVFFGTLIKRKVQHIYVANWFFGAYIIAVALLHIVNGAVMPASLG 185 Query: 208 KSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFWAL 267 KSYS Y+G QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIVHFWAL Sbjct: 186 KSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFWAL 245 Query: 268 IFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTMSGAWHQLRTDPIL 327 IFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMT+SGAWH+LR+DPIL Sbjct: 246 IFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGMMTLSGAWHKLRSDPIL 305 Query: 328 KFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYLIP 387 KFL+VSLSFYG++TFEGPMM+IKTVNALSHYTDWTIGHVH+GALGWVGF+TMG++YYLIP Sbjct: 306 KFLIVSLSFYGIATFEGPMMSIKTVNALSHYTDWTIGHVHAGALGWVGFITMGSIYYLIP 365 Query: 388 RLSGKTEMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYSFVEGV 447 RLSGK +MWS +LIE+HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGTLTY+FVE V Sbjct: 366 RLSGKKQMWSTNLIELHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYTFVESV 425 Query: 448 KATYPYYIIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 497 KATYPYY+IR GG +YL GML+MAYNT+ TMR E A IPAV AAH Sbjct: 426 KATYPYYVIRFTGGALYLGGMLLMAYNTFMTMRDGEAVAARIPAV--AAH 473