BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3843.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776592.1| cbb3-type cytochrome c oxidase subunit II tr... 394 e-108 ref|YP_001353322.1| cb-type cytochrome c oxidase subunit II [Jan... 357 4e-97 ref|ZP_08276120.1| Cytochrome c oxidase subunit CcoO [Oxalobacte... 349 1e-94 ref|YP_001099926.1| cbb3-type cytochrome c oxidase subunit II [H... 348 2e-94 ref|ZP_04761173.1| cytochrome c oxidase, cbb3-type, subunit II [... 315 2e-84 >ref|YP_003776592.1| cbb3-type cytochrome c oxidase subunit II transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64684.1| cbb3-type cytochrome c oxidase, subunit II transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 394 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 200/204 (98%), Positives = 202/204 (99%) Query: 1 MKFSHEWIEKNPWLLIGLVLLVVSVGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 MKFSHEWIEKNPWLLIGLVLLVVS+GGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 Query: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGARYSDE 120 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 120 Query: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL Sbjct: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 Query: 181 AGKTEQDALIAYLQGLGILIKAER 204 GKTEQDALIAYLQGLG+LIKAER Sbjct: 181 VGKTEQDALIAYLQGLGVLIKAER 204 >ref|YP_001353322.1| cb-type cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] gb|ABR88270.1| cb-type cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] Length = 204 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 171/204 (83%), Positives = 181/204 (88%) Query: 1 MKFSHEWIEKNPWLLIGLVLLVVSVGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 MKFSHEWIEKNPWLLI LV LVVSVGG EIVPLFFQKSTTEP+AGLKPYSALRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSALRLAGRDV 60 Query: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y REGCYNCHSQMIRP RAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 WHR HL PRD+VPESNMP YPWL + KL DI+ RM+AL+R+G PYT+E+IK APAEL Sbjct: 121 WHRTHLDRPRDLVPESNMPGYPWLVKTKLVPNDIMPRMRALQRLGVPYTDEEIKAAPAEL 180 Query: 181 AGKTEQDALIAYLQGLGILIKAER 204 GKTEQDAL+AYLQGLGILIKA R Sbjct: 181 DGKTEQDALVAYLQGLGILIKARR 204 >ref|ZP_08276120.1| Cytochrome c oxidase subunit CcoO [Oxalobacteraceae bacterium IMCC9480] gb|EGF30409.1| Cytochrome c oxidase subunit CcoO [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 159/201 (79%), Positives = 178/201 (88%) Query: 1 MKFSHEWIEKNPWLLIGLVLLVVSVGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 MKFSH WIEKNPWLLI LVL+V+S+GGL EIVPLFFQ STTEPI GLKPYSALRL+GRD+ Sbjct: 1 MKFSHAWIEKNPWLLIALVLVVISIGGLVEIVPLFFQSSTTEPITGLKPYSALRLSGRDI 60 Query: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y+REGCYNCHSQMIRPLRAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVGARYSD+ Sbjct: 61 YVREGCYNCHSQMIRPLRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGARYSDD 120 Query: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 WH HL+NPRD+VPESNMP YPWL KL D+ ++M+AL+R+G PYTE+++K+ P L Sbjct: 121 WHAIHLNNPRDLVPESNMPGYPWLATTKLVPGDVTAKMRALQRLGTPYTEQEVKDGPGTL 180 Query: 181 AGKTEQDALIAYLQGLGILIK 201 GKTEQDALIAYLQGLG LIK Sbjct: 181 EGKTEQDALIAYLQGLGTLIK 201 >ref|YP_001099926.1| cbb3-type cytochrome c oxidase subunit II [Herminiimonas arsenicoxydans] emb|CAL61801.1| Cytochrome c oxidase cbb3-type, monoheme subunit [Herminiimonas arsenicoxydans] Length = 204 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 166/204 (81%), Positives = 177/204 (86%) Query: 1 MKFSHEWIEKNPWLLIGLVLLVVSVGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 MKFSHEWIEKNPWLLI LV LVVSVGG EIVPLFFQKSTTEP+AGLKPYS LRLAGRD+ Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSPLRLAGRDI 60 Query: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y REGCYNCHSQMIRP RAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 WHR HL NPR VVPESNMP YPWL + KL +I+ +M AL+R+G PYTE+++K AP EL Sbjct: 121 WHRIHLDNPRHVVPESNMPNYPWLAKTKLVPEEIIPKMNALRRLGVPYTEDEVKAAPDEL 180 Query: 181 AGKTEQDALIAYLQGLGILIKAER 204 GKTEQDALIAYLQGLG LIKA R Sbjct: 181 VGKTEQDALIAYLQGLGTLIKARR 204 >ref|ZP_04761173.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax delafieldii 2AN] gb|EER61992.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax delafieldii 2AN] Length = 210 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 143/199 (71%), Positives = 168/199 (84%) Query: 3 FSHEWIEKNPWLLIGLVLLVVSVGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDVYI 62 F+HE +E + +L+I L+LLV+++GGL EIVPLFFQKSTTE + G+KPYSAL+L GRDVYI Sbjct: 12 FTHEKVETSNFLMIVLILLVIAIGGLTEIVPLFFQKSTTEAVTGVKPYSALQLMGRDVYI 71 Query: 63 REGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGARYSDEWH 122 REGCYNCHSQMIRP RAET RYGHYSVAGE VYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLQRVGGKYSDEWH 131 Query: 123 RAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAELAG 182 R HL+NPRDVVPESNMPAYPWLE+ +D D+ RMKAL+ +G PYT+E I + AE+ G Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEKNAIDPADVAPRMKALRTVGVPYTDEQIAGSAAEVKG 191 Query: 183 KTEQDALIAYLQGLGILIK 201 KTE DAL+AYLQ +G +K Sbjct: 192 KTEIDALVAYLQVMGRALK 210