BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3840.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776591.1| cbb3-type cytochrome c oxidase subunit III t... 594 e-168 ref|YP_001099924.1| putative cbb3-type cytochrome C oxidase subu... 455 e-126 ref|YP_001353324.1| cb-type cytochrome c oxidase subunit III [Ja... 449 e-124 ref|ZP_04761171.1| cytochrome c oxidase, cbb3-type, subunit III ... 371 e-100 ref|ZP_03697592.1| cytochrome c oxidase, cbb3-type, subunit III ... 367 e-99 >ref|YP_003776591.1| cbb3-type cytochrome c oxidase subunit III transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64683.1| cbb3-type cytochrome c oxidase, subunit III transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 286/310 (92%), Positives = 298/310 (96%) Query: 18 MADFTSGFWNIWIIVLTVLGIAGCALLLWQQSSWKVKKGDQPVAGSTTGHVWDDDLTELN 77 MADFT+GFWNIWIIVLTVLGI GC LLLWQQS+WKVKKG++ AGSTTGHVWD+DLTELN Sbjct: 1 MADFTNGFWNIWIIVLTVLGIVGCTLLLWQQSNWKVKKGEEKAAGSTTGHVWDEDLTELN 60 Query: 78 NPLPRWWMWLFYITIIFSVGYLIAYPGLGNLPGTLGWRSTGEHDADVKQAEAKYGPLFDS 137 NPLPRWWMWLFY+TI FS+GYL+AYPGLGNLPGTLGWRSTGEHDADVK AEAKYGPLF+ Sbjct: 61 NPLPRWWMWLFYLTIFFSIGYLVAYPGLGNLPGTLGWRSTGEHDADVKAAEAKYGPLFNH 120 Query: 138 YLKKDLKVVAADPQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIKE 197 YLK+DLKVVA D QAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIKE Sbjct: 121 YLKQDLKVVAGDSQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIKE 180 Query: 198 TILKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSNSAHDPIKAELGKSKFAACMACHGPG 257 TI+KGRHGVMPPMAAAVGTDKDVDNVANYVLSLS+S HDPIKAELGKSKFAACMACHGPG Sbjct: 181 TIMKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSDSTHDPIKAELGKSKFAACMACHGPG 240 Query: 258 GVGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYVWSL 317 G GNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYVWSL Sbjct: 241 GKGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYVWSL 300 Query: 318 SNKPSNAEAK 327 SNKPSNA AK Sbjct: 301 SNKPSNAAAK 310 >ref|YP_001099924.1| putative cbb3-type cytochrome C oxidase subunit III [Herminiimonas arsenicoxydans] emb|CAL61799.1| Cytochrome c oxidase cbb3-type, subunit III [Herminiimonas arsenicoxydans] Length = 312 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 213/312 (68%), Positives = 257/312 (82%), Gaps = 6/312 (1%) Query: 18 MADFTSGFWNIWIIVLTVLGIAGCALLLWQQSSWKVKKGDQPVAGS---TTGHVWDDDLT 74 M+DFT+GFW+I+I VLT+LGI GC LLLW QS K+K+ +P + TTGHVWD+DLT Sbjct: 1 MSDFTNGFWSIYITVLTLLGIFGCGLLLWSQSKVKIKR--EPGSNQQMETTGHVWDEDLT 58 Query: 75 ELNNPLPRWWMWLFYITIIFSVGYLIAYPGLGNLPGTLGWRSTGEHDADVKQAEAKYGPL 134 ELN P+PRWWMWLFYITI+F++ YL YPGLG G L W+S+GE++ ++K+A+A+YGPL Sbjct: 59 ELNTPMPRWWMWLFYITIVFALAYLFLYPGLGTYAGKLDWKSSGEYETELKKADAEYGPL 118 Query: 135 FDSYLKKDLKVVAADPQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEI 194 F Y ++D+K VAADPQA IGERLFLTYCAQCHGSDARGNKGFPNLTD DWL+GG P+I Sbjct: 119 FSKYQQQDMKAVAADPQAQLIGERLFLTYCAQCHGSDARGNKGFPNLTDKDWLYGGEPDI 178 Query: 195 IKETILKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSNSAHDPIKAELGKSKFAACMACH 254 IK TI+KGRHG+MPPM AAVG+D D++N+A+YVLSLS S DPIK GK KFAAC ACH Sbjct: 179 IKTTIIKGRHGIMPPMGAAVGSDTDIENLAHYVLSLSGSNSDPIKTVFGKPKFAACAACH 238 Query: 255 GPGGVGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYV 314 G G GNQALGAPNL+DK+WL+GGS+++I ETI KGRDN MPAF +FLG+ KVHVLAAYV Sbjct: 239 GADGKGNQALGAPNLTDKVWLHGGSVNSIMETIRKGRDNMMPAFDDFLGDAKVHVLAAYV 298 Query: 315 WSLSNKPSNAEA 326 WSLSN P E+ Sbjct: 299 WSLSN-PQKVES 309 >ref|YP_001353324.1| cb-type cytochrome c oxidase subunit III [Janthinobacterium sp. Marseille] gb|ABR88284.1| cb-type cytochrome c oxidase subunit III [Janthinobacterium sp. Marseille] Length = 314 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 217/304 (71%), Positives = 251/304 (82%), Gaps = 2/304 (0%) Query: 18 MADFTSGFWNIWIIVLTVLGIAGCALLLWQQSSWKVK-KGDQPVAGSTTGHVWDDDLTEL 76 MADFT+GFW+I+I VLT+LGIAGC LLLW QS K+K + A TTGHVWD++LTEL Sbjct: 1 MADFTNGFWDIYIAVLTLLGIAGCGLLLWSQSKVKIKVDAETGRATETTGHVWDENLTEL 60 Query: 77 NNPLPRWWMWLFYITIIFSVGYLIAYPGLGNLPGTLGWRSTGEHDADVKQAEAKYGPLFD 136 N P+PRWWMWLFY+TI+F + YL+ YPGLG+ G LGW+STG ++ ++K+A+A+YGPLF Sbjct: 61 NTPMPRWWMWLFYLTIVFGLAYLVLYPGLGSYAGKLGWQSTGAYENELKKADAEYGPLFA 120 Query: 137 SYLKKDLKVVAADPQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIK 196 Y ++DLK VAADPQA AIGERLFL YCAQCHGSDARGNKGFPNLTD DWL+GG PEIIK Sbjct: 121 KYQQQDLKAVAADPQAQAIGERLFLNYCAQCHGSDARGNKGFPNLTDKDWLYGGEPEIIK 180 Query: 197 ETILKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSNSAHDPIKAELGKSKF-AACMACHG 255 +IL GRHGVMPPMAAA+G DKDV+NVA+YVLSLS S DPIK GK KF AAC ACHG Sbjct: 181 TSILHGRHGVMPPMAAALGGDKDVENVAHYVLSLSGSTADPIKVVFGKPKFAAACAACHG 240 Query: 256 PGGVGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYVW 315 G GNQALGAPNLSD+IWL+GG + I ETI KGRDN+MP F EFLG+ KVHVLAAYVW Sbjct: 241 IDGKGNQALGAPNLSDRIWLHGGGANAIMETIRKGRDNSMPPFEEFLGDAKVHVLAAYVW 300 Query: 316 SLSN 319 SLSN Sbjct: 301 SLSN 304 >ref|ZP_04761171.1| cytochrome c oxidase, cbb3-type, subunit III [Acidovorax delafieldii 2AN] gb|EER61990.1| cytochrome c oxidase, cbb3-type, subunit III [Acidovorax delafieldii 2AN] Length = 304 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 184/308 (59%), Positives = 224/308 (72%), Gaps = 4/308 (1%) Query: 18 MADFTSGFWNIWIIVLTVLGIAGCALLLWQQSSWKVKKGDQPVAGSTTGHVWDDDLTELN 77 M+DFTS FW+I++ LT++GI C LLLW + KV + +TTGHVWD+DLTE+N Sbjct: 1 MSDFTSNFWSIYVTALTIVGIIACLLLLWITARKKVVA----TSDNTTGHVWDEDLTEMN 56 Query: 78 NPLPRWWMWLFYITIIFSVGYLIAYPGLGNLPGTLGWRSTGEHDADVKQAEAKYGPLFDS 137 NP+PRWWMWLF ITI+F GYL AYPGLG G LGW GE+DA++ +A+ + PL+ Sbjct: 57 NPMPRWWMWLFVITIVFGFGYLAAYPGLGKFTGKLGWTQKGEYDAEMAKAKTELEPLYAR 116 Query: 138 YLKKDLKVVAADPQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIKE 197 + + VA DPQA AIG+RLF+ CAQCHGSDARG+KGFPNL D DWLHGG+PE I+E Sbjct: 117 FASMKPEDVARDPQAMAIGDRLFMNNCAQCHGSDARGSKGFPNLADGDWLHGGSPEKIRE 176 Query: 198 TILKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSNSAHDPIKAELGKSKFAACMACHGPG 257 T+ GR G MPPMAAAVGT +DV N+A+YVLSLS S HD ++A LGK KF AC ACHG Sbjct: 177 TLTLGRIGNMPPMAAAVGTPEDVRNLAHYVLSLSGSPHDSLRASLGKPKFMACAACHGMD 236 Query: 258 GVGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYVWSL 317 G GNQALGAPNL+D IWL+G I IN G+ N MPA E L E ++ VLAAYVW L Sbjct: 237 GKGNQALGAPNLTDDIWLHGWGEAAITAMINNGKVNQMPAQAEKLTEAQIGVLAAYVWGL 296 Query: 318 SNKPSNAE 325 SNKP+ A+ Sbjct: 297 SNKPTAAK 304 >ref|ZP_03697592.1| cytochrome c oxidase, cbb3-type, subunit III [Lutiella nitroferrum 2002] ref|YP_004846279.1| cytochrome c oxidase, cbb3-type subunit III [Pseudogulbenkiania sp. NH8B] gb|EEG09154.1| cytochrome c oxidase, cbb3-type, subunit III [Lutiella nitroferrum 2002] dbj|BAK75865.1| cytochrome c oxidase, cbb3-type, subunit III [Pseudogulbenkiania sp. NH8B] Length = 304 Score = 367 bits (943), Expect = e-99, Method: Composition-based stats. Identities = 186/303 (61%), Positives = 227/303 (74%), Gaps = 5/303 (1%) Query: 18 MADFTSGFWNIWIIVLTVLGIAGCALLLWQQSSWKVKKGDQPVAGSTTGHVWDDDLTELN 77 M+DF S FW ++I V+ ++GI G A LL+ QS +KKG++ T GHVWDDDL E N Sbjct: 1 MSDFVSDFWGVYIAVVVIVGIVGLAYLLFSQSKTNLKKGEKV---ETVGHVWDDDLEEYN 57 Query: 78 NPLPRWWMWLFYITIIFSVGYLIAYPGLGNLPGTLGWRSTGEHDADVKQAEAKYGPLFDS 137 NPLPRWWM LFYIT++F YL+ YPGLG G GW S G+++ + QAEAKY PL+D Sbjct: 58 NPLPRWWMMLFYITLVFGAVYLVLYPGLGTFKGIRGWTSVGQYNEERSQAEAKYQPLYDK 117 Query: 138 YLKKDLKVVAADPQAHAIGERLFLTYCAQCHGSDARGNKGFPNLTDNDWLHGGTPEIIKE 197 +LK+D++ VAA+P+A A+G+RLF TYC QCHGSDARG KGFPNLTDNDWLHGGTP+ I+E Sbjct: 118 FLKQDIQTVAANPEAQAMGKRLFQTYCVQCHGSDARGAKGFPNLTDNDWLHGGTPQKIEE 177 Query: 198 TILKGRHGVMPPMAAAVGTDKDVDNVANYVLSLSNSAHDPIKAELGKSKFAA-CMACHGP 256 TI GRHG MP AA G +K V +VANYV+SLS HD +A GK F+A C ACHGP Sbjct: 178 TITIGRHGQMPAWGAAFGEEK-VKDVANYVMSLSGKKHDADRAARGKETFSAVCAACHGP 236 Query: 257 GGVGNQALGAPNLSDKIWLYGGSIDTIKETINKGRDNTMPAFGEFLGEPKVHVLAAYVWS 316 G GNQA+GAPNL+D IWLYGG+ TI ETI GR+N MPA+ +FLGE KVH+LA+YVW Sbjct: 237 DGKGNQAMGAPNLTDNIWLYGGTEKTIIETITNGRNNQMPAWKDFLGEGKVHLLASYVWG 296 Query: 317 LSN 319 LSN Sbjct: 297 LSN 299 Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Query: 234 AHDPIKAELGKSKFAA-CMACHGPGGVGNQALGAPNLSDKIWLYGGSIDTIKETINKGRD 292 A +P +GK F C+ CHG G A G PNL+D WL+GG+ I+ETI GR Sbjct: 127 AANPEAQAMGKRLFQTYCVQCHGSDARG--AKGFPNLTDNDWLHGGTPQKIEETITIGRH 184 Query: 293 NTMPAFGEFLGEPKVHVLAAYVWSLSNKPSNAE 325 MPA+G GE KV +A YV SLS K +A+ Sbjct: 185 GQMPAWGAAFGEEKVKDVANYVMSLSGKKHDAD 217